HIGHLIGHTED ARTICLES

Extreme value statistics of mutation accumulation in renewing cell populations

Philip Greulich and Benjamin D. Simons

Phys. Rev. E 98, 050401(R) (2018) - Published 16 November, 2018

Motivated by the process of tumor initiation, the authors study extreme value statistics of mutations in a model of a renewing cell population. They combine the genealogy of the cell population with the theory of branching random walks and estimate the age-dependent probability for the number of mutations in a cell to exceed a threshold value.

Modeling reservoir computing with the discrete nonlinear Schrödinger equation

Simone Borlenghi, Magnus Boman, and Anna Delin

Phys. Rev. E 98, 052101 (2018) - Published 1 November, 2018

Reservoir computing is a promising way to implement biological and artificial neural network computing systems. This paper describes a procedure to encode and process information as thermodynamical forces and currents. As an example, the authors consider numerically a simple pattern recognition problem.

Universality in dynamical phase transitions of diffusive systems

Ohad Shpielberg, Takahiro Nemoto, and João Caetano

Phys. Rev. E 98, 052116 (2018) - Published 14 November, 2018

In this work, the authors find universal behavior close to a nonequilibrium phase transition by studying diffusive systems with particle-hole symmetry. They show that the scaling properties near the phase transition are captured by a macroscopic theory. Finally, they suggest that the scaling might hold more broadly, even outside the range of validity they considered.

Isotensional and isometric force-extension response of chains with bistable units and Ising interactions

Manon Benedito and Stefano Giordano

Phys. Rev. E 98, 052146 (2018) - Published 29 November, 2018

This paper studies the mechanical properties of a chain of bistable elements that interact with each other, such as a molecular chain of folding and unfolding units. The authors observe that for a small number of elements the thermodynamic limit is not reached, and the behavior depends on the boundary conditions. The results are compared to experimental observations in stretching biological systems.

Embryonic inversion in Volvox carteri: The flipping and peeling of elastic lips

Pierre A. Haas and Raymond E. Goldstein

Phys. Rev. E 98, 052415 (2018) - Published 30 November, 2018

Some organisms finalize their embryonic development by inverting themselves, and this paper presents an elastic theory to explain the inversion mechanism. The authors analyze a particular scheme in which four lips peel back progressively to flip the embryo inside out. This framework successfully reproduces a number of experimental observations and sets the stage for a discussion of circumstances when the inversion is hindered.

Tuning phototactic robots with sensorial delays

Maximilian Leyman, Freddie Ogemark, Jan Wehr, and Giovanni Volpe

Phys. Rev. E 98, 052606 (2018) - Published 16 November, 2018

This paper presents a study of robots in which both translational and rotational diffusion react to illumination intensity, but with independent sensorial delays. The authors use theory, simulations, and experiment to explore how the two delay parameters interact to change the behavior of the robots. They demonstrate a variety of active particle behaviors with selected delay parameters.

RAPID COMMUNICATIONS

Nonlinear Dynamics and Chaos

Front propagation into an unstable state in a forced medium: Experiments and theory

K. Alfaro-Bittner, C. Castillo-Pinto, M. G. Clerc, G. González-Cortés, R. G. Rojas, and M. Wilson

Phys. Rev. E 98, 050201(R) (2018) - Published 7 November, 2018

Origin of Bellerophon states in globally coupled phase oscillators

Can Xu, Stefano Boccaletti, Shuguang Guan, and Zhigang Zheng

Phys. Rev. E 98, 050202(R) (2018) - Published 26 November, 2018

Biological Physics

Extreme value statistics of mutation accumulation in renewing cell populations

Philip Greulich and Benjamin D. Simons

Phys. Rev. E 98, 050401(R) (2018) - Published 16 November, 2018

Motivated by the process of tumor initiation, the authors study extreme value statistics of mutations in a model of a renewing cell population. They combine the genealogy of the cell population with the theory of branching random walks and estimate the age-dependent probability for the number of mutations in a cell to exceed a threshold value.

Colloids, Complex Fluids, and Active Matter

Theory for the dynamics of glassy mixtures with particle size swaps

Grzegorz Szamel

Phys. Rev. E 98, 050601(R) (2018) - Published 5 November, 2018

Theory of the dynamic magnetic susceptibility of ferrofluids

Alexey O. Ivanov and Philip J. Camp

Phys. Rev. E 98, 050602(R) (2018) - Published 20 November, 2018

Liquid Crystals

Monte Carlo simulations of biaxial ordering in systems of uniaxially interacting rodlike ellipsoids

Tushar Kanti Bose

Phys. Rev. E 98, 050701(R) (2018) - Published 27 November, 2018

Granular Materials

Effect of shape and friction on the packing and flow of granular materials

K. Michael Salerno, Dan S. Bolintineanu, Gary S. Grest, Jeremy B. Lechman, Steven J. Plimpton, Ishan Srivastava, and Leonardo E. Silbert

Phys. Rev. E 98, 050901(R) (2018) - Published 7 November, 2018

Plasma Physics

Impact of asymmetries on fuel performance in inertial confinement fusion

M. Gatu Johnson, B. D. Appelbe, J. P. Chittenden, J. Delettrez, C. Forrest, J. A. Frenje, V. Yu. Glebov, W. Grimble, B. M. Haines, I. Igumenshchev, R. Janezic, J. P. Knauer, B. Lahmann, F. J. Marshall, T. Michel, F. H. Séguin, C. Stoeckl, C. Walsh, A. B. Zylstra, and R. D. Petrasso

Phys. Rev. E 98, 051201(R) (2018) - Published 5 November, 2018

Driven thermal waves and determination of the thermal conductivity in a magnetized plasma

S. Karbashewski, R. D. Sydora, B. Van Compernolle, and M. J. Poulos

Phys. Rev. E 98, 051202(R) (2018) - Published 12 November, 2018

ARTICLES

Statistical Physics

Modeling reservoir computing with the discrete nonlinear Schrödinger equation

Simone Borlenghi, Magnus Boman, and Anna Delin

Phys. Rev. E 98, 052101 (2018) - Published 1 November, 2018

Reservoir computing is a promising way to implement biological and artificial neural network computing systems. This paper describes a procedure to encode and process information as thermodynamical forces and currents. As an example, the authors consider numerically a simple pattern recognition problem.

Log-periodicity in piecewise ballistic superdiffusion: Exact results

J. C. Cressoni, G. M. Viswanathan, and M. A. A. da Silva

Phys. Rev. E 98, 052102 (2018) - Published 1 November, 2018

Dynamical phase transition in drifted Brownian motion

Pelerine Tsobgni Nyawo and Hugo Touchette

Phys. Rev. E 98, 052103 (2018) - Published 5 November, 2018

Quantum detailed balance conditions and fluctuation relations for thermalizing quantum dynamics

M. Ramezani, F. Benatti, R. Floreanini, S. Marcantoni, M. Golshani, and A. T. Rezakhani

Phys. Rev. E 98, 052104 (2018) - Published 5 November, 2018

Quantifying the validity and breakdown of the overdamped approximation in stochastic thermodynamics: Theory and experiment

Rui Pan, Thai M. Hoang, Zhaoyu Fei, Tian Qiu, Jonghoon Ahn, Tongcang Li, and H. T. Quan

Phys. Rev. E 98, 052105 (2018) - Published 6 November, 2018

Heat distribution of a quantum harmonic oscillator

Tobias Denzler and Eric Lutz

Phys. Rev. E 98, 052106 (2018) - Published 6 November, 2018

Brownian motors in variable-shape medium: Overdamped versus underdamped cases

M. F. Kepnang Pebeu, R. L. Woulaché, and T. C. Kofane

Phys. Rev. E 98, 052107 (2018) - Published 7 November, 2018

Active image restoration

Rongrong Xie, Shengfeng Deng, Weibing Deng, and Armen E. Allahverdyan

Phys. Rev. E 98, 052108 (2018) - Published 8 November, 2018

Kolmogorov-Sinai entropy and dissipation in driven classical Hamiltonian systems

Matheus Capela, Mikel Sanz, Enrique Solano, and Lucas C. Céleri

Phys. Rev. E 98, 052109 (2018) - Published 9 November, 2018

Critical nonequilibrium cluster-flip relaxations in Ising models

Yusuke Tomita and Yoshihiko Nonomura

Phys. Rev. E 98, 052110 (2018) - Published 12 November, 2018

Assortative exchange processes

P. L. Krapivsky

Phys. Rev. E 98, 052111 (2018) - Published 12 November, 2018

Information loss under coarse graining: A geometric approach

Archishman Raju, Benjamin B. Machta, and James P. Sethna

Phys. Rev. E 98, 052112 (2018) - Published 13 November, 2018

Physical foundation and consistent formulation of atomic-level fluxes in transport processes

Youping Chen and Adrian Diaz

Phys. Rev. E 98, 052113 (2018) - Published 13 November, 2018

Feynman-Kac equation revisited

Xudong Wang, Yao Chen, and Weihua Deng

Phys. Rev. E 98, 052114 (2018) - Published 13 November, 2018

Universality in dynamical phase transitions of diffusive systems

Ohad Shpielberg, Takahiro Nemoto, and João Caetano

Phys. Rev. E 98, 052116 (2018) - Published 14 November, 2018

In this work, the authors find universal behavior close to a nonequilibrium phase transition by studying diffusive systems with particle-hole symmetry. They show that the scaling properties near the phase transition are captured by a macroscopic theory. Finally, they suggest that the scaling might hold more broadly, even outside the range of validity they considered.

Probability distribution of Brownian motion in periodic potentials

Matan Sivan and Oded Farago

Phys. Rev. E 98, 052117 (2018) - Published 15 November, 2018

Interacting elephant random walks

Chikashi Arita and Eric Ragoucy

Phys. Rev. E 98, 052118 (2018) - Published 15 November, 2018

Optimal tuning of a Brownian information engine operating in a nonequilibrium steady state

Govind Paneru, Dong Yun Lee, Jong-Min Park, Jin Tae Park, Jae Dong Noh, and Hyuk Kyu Pak

Phys. Rev. E 98, 052119 (2018) - Published 16 November, 2018

Data-driven diagnosis for compressed sensing with cross validation

Yoshinori Nakanishi-Ohno and Koji Hukushima

Phys. Rev. E 98, 052120 (2018) - Published 19 November, 2018

Percolation of defective dimers irreversibly deposited on honeycomb and triangular lattices

P. M. Centres, A. J. Ramirez-Pastor, and M. C. Gimenez

Phys. Rev. E 98, 052121 (2018) - Published 19 November, 2018

Statistics of overtake events by a tagged agent

Santanu Das, Deepak Dhar, and Sanjib Sabhapandit

Phys. Rev. E 98, 052122 (2018) - Published 20 November, 2018

Kinetic theory for a simple modeling of a phase transition: Dynamics out of local equilibrium

Shigeru Takata, Takuya Matsumoto, Anna Hirahara, and Masanari Hattori

Phys. Rev. E 98, 052123 (2018) - Published 20 November, 2018

Topological phase transition in quantum-heat-engine cycles

Mojde Fadaie, Elif Yunt, and Özgür E. Müstecaplıoğlu

Phys. Rev. E 98, 052124 (2018) - Published 20 November, 2018

Fluctuation theory in space and time: White noise in reaction-diffusion models of morphogenesis

Roman Belousov, Adrian Jacobo, and A. J. Hudspeth

Phys. Rev. E 98, 052125 (2018) - Published 21 November, 2018

Quasilocal charges and the generalized Gibbs ensemble in the Lieb-Liniger model

T. Palmai and R. M. Konik

Phys. Rev. E 98, 052126 (2018) - Published 21 November, 2018

Confinement of Lévy flights in a parabolic potential and fractional quantum oscillator

E. V. Kirichenko and V. A. Stephanovich

Phys. Rev. E 98, 052127 (2018) - Published 21 November, 2018

Thermal theory for heterogeneously architected structure: Fundamentals and application

Liujun Xu, Shuai Yang, and Jiping Huang

Phys. Rev. E 98, 052128 (2018) - Published 26 November, 2018

Examples of renormalization group transformations for image sets

Samuel Foreman, Joel Giedt, Yannick Meurice, and Judah Unmuth-Yockey

Phys. Rev. E 98, 052129 (2018) - Published 26 November, 2018

Self-consistent field theory of density correlations in classical fluids

Hiroshi Frusawa

Phys. Rev. E 98, 052130 (2018) - Published 26 November, 2018

Semiclassical analysis of distinct square partitions

M. V. N. Murthy, Matthias Brack, Rajat K. Bhaduri, and Johann Bartel

Phys. Rev. E 98, 052131 (2018) - Published 26 November, 2018

State-dependent jump processes: Itô-Stratonovich interpretations, potential, and transient solutions

Mark S. Bartlett and Amilcare Porporato

Phys. Rev. E 98, 052132 (2018) - Published 26 November, 2018

Scaling in the eigenvalue fluctuations of correlation matrices

Udaysinh T. Bhosale, S. Harshini Tekur, and M. S. Santhanam

Phys. Rev. E 98, 052133 (2018) - Published 26 November, 2018

Nernst-like effect in a flexible chain

Shuji Tamaki and Keiji Saito

Phys. Rev. E 98, 052134 (2018) - Published 26 November, 2018

Extended coarse-grained dipole model for polar liquids: Application to bulk and confined water

M. H. Motevaselian, S. Y. Mashayak, and N. R. Aluru

Phys. Rev. E 98, 052135 (2018) - Published 26 November, 2018

Ising ferromagnets in Ising-percolation square lattices, an example of Ising-Ising coupling

J. Cheraghalizadeh and M. N. Najafi

Phys. Rev. E 98, 052136 (2018) - Published 26 November, 2018

Nonuniversality of heat-engine efficiency at maximum power

Sang Hoon Lee, Jaegon Um, and Hyunggyu Park

Phys. Rev. E 98, 052137 (2018) - Published 26 November, 2018

Diffusing diffusivity: Fractional Brownian oscillator model for subdiffusion and its solution

Rohit Jain and K. L. Sebastian

Phys. Rev. E 98, 052138 (2018) - Published 26 November, 2018

Heaps' law, statistics of shared components, and temporal patterns from a sample-space-reducing process

Andrea Mazzolini, Alberto Colliva, Michele Caselle, and Matteo Osella

Phys. Rev. E 98, 052139 (2018) - Published 27 November, 2018

Irreversible work reduction by disorder in many-body quantum systems

Yuanjian Zheng and Dario Poletti

Phys. Rev. E 98, 052140 (2018) - Published 27 November, 2018

Universality of active wetting transitions

Néstor Sepúlveda and Rodrigo Soto

Phys. Rev. E 98, 052141 (2018) - Published 27 November, 2018

Current reversal in interacting colloids under time-periodic drive

Shubhashis Rana, Sanchari Goswami, Sakuntala Chatterjee, and Punyabrata Pradhan

Phys. Rev. E 98, 052142 (2018) - Published 28 November, 2018

Perturbing the shortest path on a critical directed square lattice

Fabian Hillebrand, Mirko Luković, and Hans J. Herrmann

Phys. Rev. E 98, 052143 (2018) - Published 28 November, 2018

Overlaps between eigenvectors of correlated random matrices

Joël Bun, Jean-Philippe Bouchaud, and Marc Potters

Phys. Rev. E 98, 052145 (2018) - Published 29 November, 2018

Isotensional and isometric force-extension response of chains with bistable units and Ising interactions

Manon Benedito and Stefano Giordano

Phys. Rev. E 98, 052146 (2018) - Published 29 November, 2018

This paper studies the mechanical properties of a chain of bistable elements that interact with each other, such as a molecular chain of folding and unfolding units. The authors observe that for a small number of elements the thermodynamic limit is not reached, and the behavior depends on the boundary conditions. The results are compared to experimental observations in stretching biological systems.

Critical-point behavior of a measurement-based quantum heat engine

Suman Chand and Asoka Biswas

Phys. Rev. E 98, 052147 (2018) - Published 29 November, 2018

Clustering, intermittency, and scaling for passive particles on fluctuating surfaces

Tapas Singha and Mustansir Barma

Phys. Rev. E 98, 052148 (2018) - Published 30 November, 2018

Nonlinear Dynamics and Chaos

Resonant localized modes in electrical lattices with second-neighbor coupling

Xuan-Lin Chen, Saidou Abdoulkary, P. G. Kevrekidis, and L. Q. English

Phys. Rev. E 98, 052201 (2018) - Published 5 November, 2018

Interference effect in optomechanical stochastic resonance

Min Xie, Bixuan Fan, Xiaoli He, and Qingqing Chen

Phys. Rev. E 98, 052202 (2018) - Published 5 November, 2018

Ring modes supported by concentrated cubic nonlinearity

Elad Shamriz and Boris A. Malomed

Phys. Rev. E 98, 052203 (2018) - Published 5 November, 2018

Synchronization of chaotic systems: A microscopic description

Nir Lahav, Irene Sendiña-Nadal, Chittaranjan Hens, Baruch Ksherim, Baruch Barzel, Reuven Cohen, and Stefano Boccaletti

Phys. Rev. E 98, 052204 (2018) - Published 6 November, 2018

Tripartite mutual information, entanglement, and scrambling in permutation symmetric systems with an application to quantum chaos

Akshay Seshadri, Vaibhav Madhok, and Arul Lakshminarayan

Phys. Rev. E 98, 052205 (2018) - Published 6 November, 2018

Unpinning of scroll waves attached to multiple heterogeneities

Dhriti Mahanta and Sumana Dutta

Phys. Rev. E 98, 052206 (2018) - Published 7 November, 2018

Semiclassical calculation of spectral correlation functions of chaotic systems

Sebastian Müller and Marcel Novaes

Phys. Rev. E 98, 052207 (2018) - Published 8 November, 2018

Full perturbative calculation of spectral correlation functions for chaotic systems in the unitary symmetry class

Sebastian Müller and Marcel Novaes

Phys. Rev. E 98, 052208 (2018) - Published 8 November, 2018

Using reservoir computers to distinguish chaotic signals

T. L. Carroll

Phys. Rev. E 98, 052209 (2018) - Published 8 November, 2018

Bifurcation mechanism for emergence of spontaneous oscillations in coupled heterogeneous excitable units

Kai Morino, Gouhei Tanaka, and Kazuyuki Aihara

Phys. Rev. E 98, 052210 (2018) - Published 9 November, 2018

Influence of time-delay feedback on extreme events in a forced Liénard system

R. Suresh and V. K. Chandrasekar

Phys. Rev. E 98, 052211 (2018) - Published 9 November, 2018

Transition to high-dimensional chaos in nonsmooth dynamical systems

Ru-Hai Du, Shi-Xian Qu, and Ying-Cheng Lai

Phys. Rev. E 98, 052212 (2018) - Published 13 November, 2018

Front propagation dynamics: Qualitative differences revealed by very high intensity fluctuations

Sergio E. Mangioni and Javier Fernandez Acevedo

Phys. Rev. E 98, 052213 (2018) - Published 14 November, 2018

Experimental validation of phase space conduits of transition between potential wells

Shane D. Ross, Amir E. BozorgMagham, Shibabrat Naik, and Lawrence N. Virgin

Phys. Rev. E 98, 052214 (2018) - Published 15 November, 2018

Recurrence plot analysis of irregularly sampled data

Ibrahim Ozken, Deniz Eroglu, Sebastian F. M. Breitenbach, Norbert Marwan, Liangcheng Tan, Ugur Tirnakli, and Jürgen Kurths

Phys. Rev. E 98, 052215 (2018) - Published 15 November, 2018

Engineering separatrix volume as a control technique for dynamical transitions

Timo Eichmann, Eike P. Thesing, and James R. Anglin

Phys. Rev. E 98, 052216 (2018) - Published 19 November, 2018

Planar and radial kinks in nonlinear Klein-Gordon models: Existence, stability, and dynamics

P. G. Kevrekidis, I. Danaila, J.-G. Caputo, and R. Carretero-González

Phys. Rev. E 98, 052217 (2018) - Published 19 November, 2018

Interplay among inertia, time delay, and frustration on synchronization dynamics

Fuli Dai, Shijie Zhou, Thomas Peron, Wei Lin, and Peng Ji

Phys. Rev. E 98, 052218 (2018) - Published 19 November, 2018

Guiding-center motion for electrons in strong laser fields

J. Dubois, S. A. Berman, C. Chandre, and T. Uzer

Phys. Rev. E 98, 052219 (2018) - Published 19 November, 2018

Riemann problems and dispersive shocks in self-focusing media

Gino Biondini

Phys. Rev. E 98, 052220 (2018) - Published 20 November, 2018

Effective nonlinear model for electron transport in deformable helical molecules

E. Díaz, A. Contreras, J. Hernández, and F. Domínguez-Adame

Phys. Rev. E 98, 052221 (2018) - Published 21 November, 2018

Complete synchronization of chaotic maps under advection

M. Contreras and C. Anteneodo

Phys. Rev. E 98, 052222 (2018) - Published 26 November, 2018

Stabilization of thermoacoustic oscillators by delay coupling

H. Hyodo and T. Biwa

Phys. Rev. E 98, 052223 (2018) - Published 26 November, 2018

Macroscopic oscillations of a quadratic integrate-and-fire neuron network with global distributed-delay coupling

Irmantas Ratas and Kestutis Pyragas

Phys. Rev. E 98, 052224 (2018) - Published 26 November, 2018

Capture and chaotic scattering of a charged particle by a magnetic monopole under a uniform electric field

Kou Misaki and Naoto Nagaosa

Phys. Rev. E 98, 052225 (2018) - Published 27 November, 2018

Identification of suitable embedding dimensions and lags for time series generated by chaotic, finite-dimensional systems

Alessio Perinelli and Leonardo Ricci

Phys. Rev. E 98, 052226 (2018) - Published 27 November, 2018

Autoresonance in a strongly nonlinear chain driven at one end

Agnessa Kovaleva

Phys. Rev. E 98, 052227 (2018) - Published 28 November, 2018

Periodicity of quantum correlations in the quantum kicked top

Udaysinh T. Bhosale and M. S. Santhanam

Phys. Rev. E 98, 052228 (2018) - Published 28 November, 2018

Characteristics of chaos evolution in one-dimensional disordered nonlinear lattices

B. Senyange, B. Many Manda, and Ch. Skokos

Phys. Rev. E 98, 052229 (2018) - Published 29 November, 2018

Kuramoto model of weakly conformed oscillators

Hung-Yi Ly, Huan-Yu Kuo, and Kuo-An Wu

Phys. Rev. E 98, 052230 (2018) - Published 29 November, 2018

Networks and Complex Systems

Effects of sampling interaction partners and competitors in evolutionary games

Christoph Hauert and Jacek Miȩkisz

Phys. Rev. E 98, 052301 (2018) - Published 5 November, 2018

Reactive random walkers on complex networks

Giulia Cencetti, Federico Battiston, Duccio Fanelli, and Vito Latora

Phys. Rev. E 98, 052302 (2018) - Published 5 November, 2018

Variability of collective dynamics in random tree networks of strongly coupled stochastic excitable elements

Ali Khaledi-Nasab, Justus A. Kromer, Lutz Schimansky-Geier, and Alexander B. Neiman

Phys. Rev. E 98, 052303 (2018) - Published 12 November, 2018

Identifying exogenous and endogenous activity in social media

Kazuki Fujita, Alexey Medvedev, Shinsuke Koyama, Renaud Lambiotte, and Shigeru Shinomoto

Phys. Rev. E 98, 052304 (2018) - Published 13 November, 2018

Percolation of hierarchical networks and networks of networks

Louis M. Shekhtman and Shlomo Havlin

Phys. Rev. E 98, 052305 (2018) - Published 14 November, 2018

Anisotropic opinion dynamics with an adaptive social rule

Juan Neirotti

Phys. Rev. E 98, 052306 (2018) - Published 19 November, 2018

Random walk on temporal networks with lasting edges

Julien Petit, Martin Gueuning, Timoteo Carletti, Ben Lauwens, and Renaud Lambiotte

Phys. Rev. E 98, 052307 (2018) - Published 20 November, 2018

Topological percolation on hyperbolic simplicial complexes

Ginestra Bianconi and Robert M. Ziff

Phys. Rev. E 98, 052308 (2018) - Published 21 November, 2018

Stable information transfer network facilitates the emergence of collective behavior of bird flocks

Jiaping Ren, Wanxuan Sun, Dinesh Manocha, Aming Li, and Xiaogang Jin

Phys. Rev. E 98, 052309 (2018) - Published 26 November, 2018

Temporal connectivity in finite networks with nonuniform measures

Pete Pratt, Carl P. Dettmann, and Woon Hau Chin

Phys. Rev. E 98, 052310 (2018) - Published 26 November, 2018

Close and ordinary social contacts: How important are they in promoting large-scale contagion?

Peng-Bi Cui (崔鹏碧), Wei Wang, Shi-Min Cai, Tao Zhou, and Ying-Cheng Lai

Phys. Rev. E 98, 052311 (2018) - Published 28 November, 2018

Critical phenomena of information spreading dynamics on networks with cliques

Wei Wang, Ze-Xun Wang, and Shi-Min Cai

Phys. Rev. E 98, 052312 (2018) - Published 27 November, 2018

Relevance of backtracking paths in recurrent-state epidemic spreading on networks

Claudio Castellano and Romualdo Pastor-Satorras

Phys. Rev. E 98, 052313 (2018) - Published 27 November, 2018

Examination of Markov-chain approximation in football games based on time evolution of ball-passing networks

Ken Yamamoto and Takuma Narizuka

Phys. Rev. E 98, 052314 (2018) - Published 28 November, 2018

Explosive synchronization in phase-frustrated multiplex networks

Pitambar Khanra, Prosenjit Kundu, Chittaranjan Hens, and Pinaki Pal

Phys. Rev. E 98, 052315 (2018) - Published 28 November, 2018

Large algebraic connectivity fluctuations in spatial network ensembles imply a predictive advantage from node location information

Matthew Garrod and Nick S. Jones

Phys. Rev. E 98, 052316 (2018) - Published 29 November, 2018

Kinetic theory for financial Brownian motion from microscopic dynamics

Kiyoshi Kanazawa, Takumi Sueshige, Hideki Takayasu, and Misako Takayasu

Phys. Rev. E 98, 052317 (2018) - Published 29 November, 2018

Biological Physics

Conduction delays can enhance formation of up and down states in spiking neuronal networks

Pavel M. Esir, Susan Yu. Gordleeva, Alexander Yu. Simonov, Alexander N. Pisarchik, and Victor B. Kazantsev

Phys. Rev. E 98, 052401 (2018) - Published 1 November, 2018

Engineered cardiac tissue analyzed using the mechanical bidomain model

Kharananda Sharma and Bradley J. Roth

Phys. Rev. E 98, 052402 (2018) - Published 5 November, 2018

Stochastic activation in a genetic switch model

John Hertz, Joanna Tyrcha, and Alvaro Correales

Phys. Rev. E 98, 052403 (2018) - Published 6 November, 2018

Propagating speed waves in flocks: A mathematical model

Andrea Cavagna, Daniele Conti, Irene Giardina, and Tomas S. Grigera

Phys. Rev. E 98, 052404 (2018) - Published 8 November, 2018

Bacterial flagellar bundling and unbundling via polymorphic transformations

Wanho Lee, Yongsam Kim, Boyce E. Griffith, and Sookkyung Lim

Phys. Rev. E 98, 052405 (2018) - Published 19 November, 2018

Optimizing a jump-diffusion model of a starving forager

Nikhil Krishnan and Zachary P. Kilpatrick

Phys. Rev. E 98, 052406 (2018) - Published 19 November, 2018

Entrapment of pusher and puller bacteria near a solid surface

Kuan-Ting Wu, Yi-Teng Hsiao, and Wei-Yen Woon

Phys. Rev. E 98, 052407 (2018) - Published 26 November, 2018

Computing transition rates for rare events: When Kramers theory meets the free-energy landscape

François Sicard

Phys. Rev. E 98, 052408 (2018) - Published 26 November, 2018

Mechanical oscillations in biological tissues as a result of delayed rest-length changes

José J. Muñoz, Mónica Dingle, and Manuel Wenzel

Phys. Rev. E 98, 052409 (2018) - Published 26 November, 2018

Heterogeneity and nonaffinity of cell-induced matrix displacements

Brian Burkel, Maria Proestaki, Stephen Tyznik, and Jacob Notbohm

Phys. Rev. E 98, 052410 (2018) - Published 26 November, 2018

Nonlinear concentration patterns and bands in autochemotactic suspensions

Enkeleida Lushi, Raymond E. Goldstein, and Michael J. Shelley

Phys. Rev. E 98, 052411 (2018) - Published 27 November, 2018

Effects of neighboring microtubules on the microscopic dynamics of kinesin transport

Kejie Chen, Woochul Nam, and Bogdan I. Epureanu

Phys. Rev. E 98, 052412 (2018) - Published 27 November, 2018

Transient drift of Escherichia coli under a diffusing step nutrient profile

Sibendu Samanta, Ritwik Layek, Shantimoy Kar, Sudipta Mukhopadhyay, and Suman Chakraborty

Phys. Rev. E 98, 052413 (2018) - Published 27 November, 2018

Improved control effect of absence seizures by autaptic connections to the subthalamic nucleus

Denggui Fan and Qingyun Wang

Phys. Rev. E 98, 052414 (2018) - Published 28 November, 2018

Embryonic inversion in Volvox carteri: The flipping and peeling of elastic lips

Pierre A. Haas and Raymond E. Goldstein

Phys. Rev. E 98, 052415 (2018) - Published 30 November, 2018

Some organisms finalize their embryonic development by inverting themselves, and this paper presents an elastic theory to explain the inversion mechanism. The authors analyze a particular scheme in which four lips peel back progressively to flip the embryo inside out. This framework successfully reproduces a number of experimental observations and sets the stage for a discussion of circumstances when the inversion is hindered.

Polymers

Testing the physics of knots with a Feringa nanoengine

M. Lang, C. Schuster, R. Dockhorn, M. Wengenmayr, and J.-U. Sommer

Phys. Rev. E 98, 052501 (2018) - Published 5 November, 2018

Colloids, Complex Fluids, and Active Matter

Self-assembly of complex structures in colloid-polymer mixtures

Erdal C. Oğuz, Aleksandar Mijailović, and Michael Schmiedeberg

Phys. Rev. E 98, 052601 (2018) - Published 2 November, 2018

Dynamic magnetic response of a ferrofluid in a static uniform magnetic field

Timur M. Batrudinov, Yuliya E. Nekhoroshkova, Egor I. Paramonov, Vladimir S. Zverev, Ekaterina A. Elfimova, Alexey O. Ivanov, and Philip J. Camp

Phys. Rev. E 98, 052602 (2018) - Published 6 November, 2018

Fractal aggregation of active particles

M. Paoluzzi, M. Leoni, and M. C. Marchetti

Phys. Rev. E 98, 052603 (2018) - Published 7 November, 2018

Saddle-splay modulus of reverse microemulsions: Experimental determination using small-angle neutron scattering and dielectric relaxation spectroscopy

P. M. Geethu, Indresh Yadav, Ethayaraja Mani, Vinod K. Aswal, and Dillip K. Satapathy

Phys. Rev. E 98, 052604 (2018) - Published 12 November, 2018

Importance of reorientational dynamics for the charge transport in ionic liquids

P. Sippel, S. Krohns, D. Reuter, P. Lunkenheimer, and A. Loidl

Phys. Rev. E 98, 052605 (2018) - Published 15 November, 2018

Tuning phototactic robots with sensorial delays

Maximilian Leyman, Freddie Ogemark, Jan Wehr, and Giovanni Volpe

Phys. Rev. E 98, 052606 (2018) - Published 16 November, 2018

This paper presents a study of robots in which both translational and rotational diffusion react to illumination intensity, but with independent sensorial delays. The authors use theory, simulations, and experiment to explore how the two delay parameters interact to change the behavior of the robots. They demonstrate a variety of active particle behaviors with selected delay parameters.

Cluster crystals with combined soft- and hard-core repulsive interactions

Lorenzo Caprini, Emilio Hernández-García, and Cristóbal López

Phys. Rev. E 98, 052607 (2018) - Published 19 November, 2018

Interacting passive advective scalars in an active medium

Sk Raj Hossein, Rituparno Mandal, and Madan Rao

Phys. Rev. E 98, 052608 (2018) - Published 26 November, 2018

Population variability and temporal disorder disrupt coherent motion and biological functionality of active matter

M. Leoni and T. B. Liverpool

Phys. Rev. E 98, 052609 (2018) - Published 26 November, 2018

Unraveling modular microswimmers: From self-assembly to ion-exchange-driven motors

Benno Liebchen, Ran Niu, Thomas Palberg, and Hartmut Löwen

Phys. Rev. E 98, 052610 (2018) - Published 30 November, 2018

Liquid Crystals

Dynamics of phototunable two-dimensional polar wetting sheets of a dendritic liquid crystal

Satoshi Aya, Takaaki Hikima, Osamu Haba, Koichiro Yonetake, and Fumito Araoka

Phys. Rev. E 98, 052701 (2018) - Published 2 November, 2018

Adsorption of the liquid crystal molecule 5CB on graphene

Sean A. Fischer, Jakub Kołacz, Christopher M. Spillmann, and Daniel Gunlycke

Phys. Rev. E 98, 052702 (2018) - Published 6 November, 2018

Evidence of a first-order smectic-hexatic transition and its proximity to a tricritical point in smectic films

Ivan A. Zaluzhnyy, Ruslan P. Kurta, Nastasia Mukharamova, Young Yong Kim, Ruslan M. Khubbutdinov, Dmitry Dzhigaev, Vladimir V. Lebedev, Elena S. Pikina, Efim I. Kats, Noel A. Clark, Michael Sprung, Boris I. Ostrovskii, and Ivan A. Vartanyants

Phys. Rev. E 98, 052703 (2018) - Published 16 November, 2018

State transition at electrohydrodynamic convection of twisted nematic liquid crystals

Chul Gyu Jhun, Gyu Jin Choi, Dae Geon Ryu, Jong-Hoon Huh, and Jin Seog Gwag

Phys. Rev. E 98, 052704 (2018) - Published 19 November, 2018

Phase transitions in nanofilms of polar smectic liquid crystals with multilayer periodicity

N. S. Shuravin, P. V. Dolganov, and V. K. Dolganov

Phys. Rev. E 98, 052705 (2018) - Published 20 November, 2018

Critical behavior of the optical birefringence at the nematic to twist-bend nematic phase transition

Damian Pociecha, Catriona A. Crawford, Daniel A. Paterson, John M. D. Storey, Corrie T. Imrie, Nataša Vaupotič, and Ewa Gorecka

Phys. Rev. E 98, 052706 (2018) - Published 26 November, 2018

Effective dielectric tensor of deformed-helix ferroelectric liquid crystals with subwavelength pitch and large tilt angle

Leonardo Silvestri, Hrishikesh Srinivas, and François Ladouceur

Phys. Rev. E 98, 052707 (2018) - Published 27 November, 2018

Films and Interfaces

Distributional fixed-point equations for island nucleation in one dimension: The inverse problem

Hrvojka Krcelic, Michael Grinfeld, and Paul A. Mulheran

Phys. Rev. E 98, 052801 (2018) - Published 12 November, 2018

Physical mechanisms of the oscillatory 2λ-O mode in directional solidification

Jihène Ghmadh, Jean-Marc Debierre, Marc Georgelin, Rahma Guérin, and Alain Pocheau

Phys. Rev. E 98, 052802 (2018) - Published 16 November, 2018

Mesoscopic approach to fluid-solid interaction: Apparent liquid slippage and its effect on permeability estimation

Zi Li, Sergio Galindo-Torres, Alexander Scheuermann, and Ling Li

Phys. Rev. E 98, 052803 (2018) - Published 19 November, 2018

Evaporation kinetics of pure water drops: Thermal patterns, Marangoni flow, and interfacial temperature difference

Tejaswi Josyula, Zhenying Wang, Alexandros Askounis, Daniel Orejon, Sivasankaran Harish, Yasuyuki Takata, Pallab Sinha Mahapatra, and Arvind Pattamatta

Phys. Rev. E 98, 052804 (2018) - Published 26 November, 2018

Granular Materials

Rapid multiscale modeling of flow in porous media

Pejman Tahmasebi and Serveh Kamrava

Phys. Rev. E 98, 052901 (2018) - Published 2 November, 2018

Dynamics of silo deformation under granular discharge

Claudia Colonnello and Miroslav Kramár

Phys. Rev. E 98, 052902 (2018) - Published 6 November, 2018

Ploughing friction on wet and dry sand

R. W. Liefferink, B. Weber, and D. Bonn

Phys. Rev. E 98, 052903 (2018) - Published 6 November, 2018

Enskog kinetic theory for a model of a confined quasi-two-dimensional granular fluid

Vicente Garzó, Ricardo Brito, and Rodrigo Soto

Phys. Rev. E 98, 052904 (2018) - Published 7 November, 2018

Characterizing the nature of the rigidity transition

S. H. E. Rahbari, J. Vollmer, and Hyunggyu Park

Phys. Rev. E 98, 052905 (2018) - Published 13 November, 2018

Liquid redistribution in sheared wet granular media

Sudeshna Roy, Stefan Luding, and Thomas Weinhart

Phys. Rev. E 98, 052906 (2018) - Published 19 November, 2018

Local dilation and compaction of granular materials induced by plate drag

Murino Kobayakawa, Shinichiro Miyai, Takuya Tsuji, and Toshitsugu Tanaka

Phys. Rev. E 98, 052907 (2018) - Published 20 November, 2018

Effective diffusivity in lattices of impermeable superballs

Magnus Röding

Phys. Rev. E 98, 052908 (2018) - Published 26 November, 2018

Erosion-deposition regime formation in granular column collapse over an erodible surface

Yesheng Wu, Pingshan Li, and Dengming Wang

Phys. Rev. E 98, 052909 (2018) - Published 29 November, 2018

Rheology and structure of polydisperse three-dimensional packings of spheres

David Cantor, Emilien Azéma, Philippe Sornay, and Farhang Radjai

Phys. Rev. E 98, 052910 (2018) - Published 30 November, 2018

Solid Mechanics

Effect of predeformation on the propagation of vector solitons in flexible mechanical metamaterials

B. Deng, V. Tournat, and K. Bertoldi

Phys. Rev. E 98, 053001 (2018) - Published 5 November, 2018

Shear band broadening in simulated glasses

Darius D. Alix-Williams and Michael L. Falk

Phys. Rev. E 98, 053002 (2018) - Published 27 November, 2018

Fluid Dynamics

Counterion flow through a deformable and charged nanochannel

Mpumelelo Matse, Peter Berg, and Michael Eikerling

Phys. Rev. E 98, 053101 (2018) - Published 1 November, 2018

Axial and radial patterns of a bidispersed suspension in a fully filled horizontal rotating cylinder

John C. Nasaba and Anugrah Singh

Phys. Rev. E 98, 053102 (2018) - Published 6 November, 2018

Front evaporation effects on wicking in two- and three-dimensional porous domains

Eric M. Benner and Dimiter N. Petsev

Phys. Rev. E 98, 053104 (2018) - Published 16 November, 2018

Negative acoustic radiation force induced on an elastic sphere by laser irradiation

Hai-Qun Yu, Jie Yao, Da-Jian Wu, Xue-Wei Wu, and Xiao-Jun Liu

Phys. Rev. E 98, 053105 (2018) - Published 26 November, 2018

Three-dimensional transition of zero-pressure-gradient boundary layer by impulsively and nonimpulsively started harmonic wall excitation

Pushpender Sharma, Tapan K. Sengupta, and Swagata Bhaumik

Phys. Rev. E 98, 053106 (2018) - Published 26 November, 2018

Impact of clogging on the transfer dynamics of hydraulic networks

D. S. Griffani, P. Rognon, and I. Einav

Phys. Rev. E 98, 053107 (2018) - Published 27 November, 2018

Plasma Physics

Coupling between a laser and a prestructured target with an arbitrary structure period

K. Q. Pan, S. E. Jiang, L. Guo, S. W. Li, Z. C. Li, D. Yang, C. Y. Zheng, B. H. Zhang, and X. T. He

Phys. Rev. E 98, 053201 (2018) - Published 1 November, 2018

High-angle deflection of the energetic electrons by a voluminous magnetic structure in near-normal intense laser-plasma interactions

J. Peebles, A. V. Arefiev, S. Zhang, C. McGuffey, M. Spinks, J. Gordon, E. W. Gaul, G. Dyer, M. Martinez, M. E. Donovan, T. Ditmire, J. Park, H. Chen, H. S. McLean, M. S. Wei, S. I. Krasheninnikov, and F. N. Beg

Phys. Rev. E 98, 053202 (2018) - Published 7 November, 2018

Inverse polarity effect for electrical explosion of fine metal wires in vacuum

G. S. Sarkisov, A. Hamilton, and V. I. Sotnikov

Phys. Rev. E 98, 053203 (2018) - Published 7 November, 2018

Meson-catalyzed fusion in ultradense plasmas

C. Deutsch, J. P. Didelez, A. Bendib, and K. Bendib-Kalache

Phys. Rev. E 98, 053204 (2018) - Published 12 November, 2018

Entropy of plasmas described with regularized κ distributions

H. Fichtner, K. Scherer, M. Lazar, H. J. Fahr, and Z. Vörös

Phys. Rev. E 98, 053205 (2018) - Published 13 November, 2018

Energy transfer between lasers in low-gas-fill-density hohlraums

A. L. Kritcher, J. Ralph, D. E. Hinkel, T. Döppner, M. Millot, D. Mariscal, R. Benedetti, D. J. Strozzi, T. Chapman, C. Goyon, B. MacGowan, P. Michel, D. A. Callahan, and O. A. Hurricane

Phys. Rev. E 98, 053206 (2018) - Published 19 November, 2018

Electron acceleration induced by interaction of two relativistic laser pulses in underdense plasmas

T. W. Huang, C. T. Zhou, R. X. Bai, L. B. Ju, K. Jiang, T. Y. Long, H. Zhang, S. Z. Wu, and S. C. Ruan

Phys. Rev. E 98, 053207 (2018) - Published 26 November, 2018

Computational Physics

Hydrodynamic interactions between solutes in multiparticle collision dynamics

Vincent Dahirel, Xudong Zhao, Baptiste Couet, Guillaume Batôt, and Marie Jardat

Phys. Rev. E 98, 053301 (2018) - Published 1 November, 2018

Information estimation using nonparametric copulas

Houman Safaai, Arno Onken, Christopher D. Harvey, and Stefano Panzeri

Phys. Rev. E 98, 053302 (2018) - Published 5 November, 2018

Introducing unsteady and nonuniform source terms in entropic lattice kinetic models using Fourier series

Reza Khazaeli, Mohammad Reza Nazari, and Abed Zadehgol

Phys. Rev. E 98, 053303 (2018) - Published 6 November, 2018

Machine-learning solver for modified diffusion equations

Qianshi Wei, Ying Jiang, and Jeff Z. Y. Chen

Phys. Rev. E 98, 053304 (2018) - Published 6 November, 2018

Identifying structural changes with unsupervised machine learning methods

Nicholas Walker, Ka-Ming Tam, Brian Novak, and M. Jarrell

Phys. Rev. E 98, 053305 (2018) - Published 7 November, 2018

Introducing a quantum kinetic model using the generalized Boltzmann equation in the complex phase space

Abed Zadehgol and Reza Khazaeli

Phys. Rev. E 98, 053307 (2018) - Published 21 November, 2018

Optimization of population annealing Monte Carlo for large-scale spin-glass simulations

Amin Barzegar, Christopher Pattison, Wenlong Wang, and Helmut G. Katzgraber

Phys. Rev. E 98, 053308 (2018) - Published 21 November, 2018

Preconditioned multiple-relaxation-time lattice Boltzmann equation model for incompressible flow in porous media

Xuhui Meng, Liang Wang, Xiaofan Yang, and Zhaoli Guo

Phys. Rev. E 98, 053309 (2018) - Published 27 November, 2018

Coupled discrete unified gas kinetic scheme for the thermal compressible flows in all Knudsen number regimes

Hongtao Liu, Mingchi Kong, Qing Chen, Liang Zheng, and Yong Cao

Phys. Rev. E 98, 053310 (2018) - Published 29 November, 2018

Higher-order lattice Boltzmann model for thermohydrodynamics

Mohammad Atif, Manjusha Namburi, and Santosh Ansumali

Phys. Rev. E 98, 053311 (2018) - Published 29 November, 2018

ERRATA

Erratum: Condensation, demixing, and orientational ordering of magnetic colloidal suspensions [Phys. Rev. E 91, 052127 (2015)]

Stefanie M. Cattes, Sabine H. L. Klapp, and Martin Schoen

Phys. Rev. E 98, 059901 (2018) - Published 12 November, 2018

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