HIGHLIGHTED ARTICLES

Modular and programmable material systems drawing from the architecture of skeletal muscle

Narayanan Kidambi, Ryan L. Harne, and Kon-Well Wang

Phys. Rev. E 98, 043001 (2018) - Published 9 October, 2018

A specially designed modular material can adopt many force-generating and energy-storing postures, which could be useful for soft robotics.

Delay-induced stochastic bursting in excitable noisy systems

Chunming Zheng and Arkady Pikovsky

Phys. Rev. E 98, 042148 (2018) - Published 31 October, 2018

Using a combination of time delay and white noise, this paper shows that a simplified neuron model exhibits a pattern of coherent spikes that is labeled stochastic bursting. The authors study this analytically for cases where the characteristic time scales are markedly different, and provide an analysis based on the Fokker-Planck equation that they expect would be applicable to more complex, and realistic, systems.

Anomalous, non-Gaussian, viscoelastic, and age-dependent dynamics of histonelike nucleoid-structuring proteins in live Escherichia coli

Asmaa A. Sadoon and Yong Wang

Phys. Rev. E 98, 042411 (2018) - Published 19 October, 2018

The dynamics of a particular protein inside live E. coli bacteria displays unusual behavior, with diffusion coefficients that follow a power law and a non-Gaussian distribution of displacements. The authors also find that the rheological behavior of the cytoplasm differs from that of a homogeneous protein solution, and exhibits a liquid-glass transition.

Confluent and nonconfluent phases in a model of cell tissue

Eial Teomy, David A. Kessler, and Herbert Levine

Phys. Rev. E 98, 042418 (2018) - Published 31 October, 2018

This paper presents a Voronoi analysis of cellular arrangements where the condition of confluency, namely that there is no free space between cells, is relaxed. As a result, a range of new phases are uncovered, as well as the conditions to have transitions between them. These result may have further implications in understanding the natural behavior of collections of cells.

RAPID COMMUNICATIONS

Statistical Physics

Brownian diffusion in a dilute field of traps is Fickean but non-Gaussian

Serge Mora and Yves Pomeau

Phys. Rev. E 98, 040101(R) (2018) - Published 25 October, 2018

Nonlinear Dynamics and Chaos

Turing-Hopf front invasion: Rings and shells

Delora K. Gaskins, Jamie S. Soohoo, Irving R. Epstein, and Milos Dolnik

Phys. Rev. E 98, 040201(R) (2018) - Published 5 October, 2018

Homoclinic chaos and its organization in a nonlinear optics model

Krishna Pusuluri and Andrey Shilnikov

Phys. Rev. E 98, 040202(R) (2018) - Published 30 October, 2018

Colloids, Complex Fluids, and Active Matter

Nonequilibrium kinetics of the transformation of liquids into physical gels

José Manuel Olais-Govea, Leticia López-Flores, Martín Chávez-Páez, and Magdaleno Medina-Noyola

Phys. Rev. E 98, 040601(R) (2018) - Published 2 October, 2018

Squeezed in three dimensions, moving in two: Hydrodynamic theory of three-dimensional incompressible easy-plane polar active fluids

Leiming Chen (陈雷鸣), Chiu Fan Lee, and John Toner

Phys. Rev. E 98, 040602(R) (2018) - Published 24 October, 2018

Biphasic rate exchange in supercooled o-terphenyl from an ensemble analysis of single-molecule data

Harveen Kaur, Sachin Dev Verma, Keewook Paeng, Laura J. Kaufman, and Mark A. Berg

Phys. Rev. E 98, 040603(R) (2018) - Published 31 October, 2018

Granular Materials

Elastoplastic description of sudden failure in athermal amorphous materials during quasistatic loading

Marko Popović, Tom W. J. de Geus, and Matthieu Wyart

Phys. Rev. E 98, 040901(R) (2018) - Published 11 October, 2018

ARTICLES

Statistical Physics

Hierarchies of Landau-Lifshitz-Bloch equations for nanomagnets: A functional integral framework

Julien Tranchida, Pascal Thibaudeau, and Stam Nicolis

Phys. Rev. E 98, 042101 (2018) - Published 1 October, 2018

Effect of walking distance on a queuing system of a totally asymmetric simple exclusion process equipped with functions of site assignments

Satori Tsuzuki, Daichi Yanagisawa, and Katsuhiro Nishinari

Phys. Rev. E 98, 042102 (2018) - Published 1 October, 2018

Minimal dissipation in processes far from equilibrium

Marcus V. S. Bonança and Sebastian Deffner

Phys. Rev. E 98, 042103 (2018) - Published 2 October, 2018

Prediction of thermal conductance and friction coefficients at a solid-gas interface from statistical learning of collisions

Meng Liao, Quy-Dong To, Céline Léonard, and Wenlu Yang

Phys. Rev. E 98, 042104 (2018) - Published 2 October, 2018

Anomalous heat equation in a system connected to thermal reservoirs

Priyanka, Aritra Kundu, Abhishek Dhar, and Anupam Kundu

Phys. Rev. E 98, 042105 (2018) - Published 2 October, 2018

Nonlinear response theory for Markov processes. III. Stochastic models for dipole reorientations

Gregor Diezemann

Phys. Rev. E 98, 042106 (2018) - Published 3 October, 2018

Stochastic modeling of nonstationary earthquake time series with long-term clustering effects

Georgios Michas and Filippos Vallianatos

Phys. Rev. E 98, 042107 (2018) - Published 3 October, 2018

Scaling property of the heat-current flows across a weak interface

Lei Wang (王雷) and Yanjiang Guo (郭彦江)

Phys. Rev. E 98, 042108 (2018) - Published 3 October, 2018

Cover-time distribution of random processes in granular gases

Ke Cheng, Jia-Qi Dong, Liang Huang, and Lei Yang

Phys. Rev. E 98, 042109 (2018) - Published 3 October, 2018

Polarization of periodic degrees of freedom in response to cyclic transformations

Hadrien Vroylandt and Diego Frezzato

Phys. Rev. E 98, 042110 (2018) - Published 4 October, 2018

Critical region of long-range depinning transitions

A. B. Kolton and E. A. Jagla

Phys. Rev. E 98, 042111 (2018) - Published 4 October, 2018

Universal constraint for efficiency and power of a low-dissipation heat engine

Yu-Han Ma, Dazhi Xu, Hui Dong, and Chang-Pu Sun

Phys. Rev. E 98, 042112 (2018) - Published 4 October, 2018

Matrix product operators for sequence-to-sequence learning

Chu Guo, Zhanming Jie, Wei Lu, and Dario Poletti

Phys. Rev. E 98, 042114 (2018) - Published 5 October, 2018

Phase transitions in stigmergic territorial systems

A. Heiblum Robles and L. Giuggioli

Phys. Rev. E 98, 042115 (2018) - Published 8 October, 2018

Power-law random banded matrices and ultrametric matrices: Eigenvector distribution in the intermediate regime

E. Bogomolny and M. Sieber

Phys. Rev. E 98, 042116 (2018) - Published 8 October, 2018

Continuous-time random walks and Fokker-Planck equation in expanding media

F. Le Vot and S. B. Yuste

Phys. Rev. E 98, 042117 (2018) - Published 8 October, 2018

Giant fluctuations in logistic growth of two species competing for limited resources

Bahram Houchmandzadeh

Phys. Rev. E 98, 042118 (2018) - Published 9 October, 2018

Interactions in nonconserving driven diffusive systems

Tripti Midha, Anatoly B. Kolomeisky, and Arvind Kumar Gupta

Phys. Rev. E 98, 042119 (2018) - Published 9 October, 2018

Reciprocal relations associated with linear responses to mechanical and thermal perturbations in nonequilibrium Langevin systems

Kazuo Yamada and Akira Yoshimori

Phys. Rev. E 98, 042120 (2018) - Published 10 October, 2018

Work extraction using Gaussian operations in noninteracting fermionic systems

Marvellous Onuma-Kalu and Robert B. Mann

Phys. Rev. E 98, 042121 (2018) - Published 10 October, 2018

Measurement-driven single temperature engine

Xuehao Ding, Juyeon Yi, Yong Woon Kim, and Peter Talkner

Phys. Rev. E 98, 042122 (2018) - Published 10 October, 2018

Squeezed thermal reservoir as a generalized equilibrium reservoir

Gonzalo Manzano

Phys. Rev. E 98, 042123 (2018) - Published 12 October, 2018

Effects of a magnetic field on the dynamics of the one-dimensional Heisenberg model with Dzyaloshinskii-Moriya interactions

Maria Eugênia Silva Nunes, Érica de Mello Silva, Paulo H. L. Martins, J. A. Plascak, and João Florencio

Phys. Rev. E 98, 042124 (2018) - Published 15 October, 2018

Lower lower-critical spin-glass dimension from quenched mixed-spatial-dimensional spin glasses

Bora Atalay and A. Nihat Berker

Phys. Rev. E 98, 042125 (2018) - Published 15 October, 2018

Avalanche dynamics in higher-dimensional fiber bundle models

Zsuzsa Danku, Géza Ódor, and Ferenc Kun

Phys. Rev. E 98, 042126 (2018) - Published 15 October, 2018

Evidence for a first-order phase transition at the divergence region of activity expansions

M. V. Ushcats, L. A. Bulavin, and S. Yu. Ushcats

Phys. Rev. E 98, 042127 (2018) - Published 15 October, 2018

Detecting topological phases via survival probabilities of edge Majorana fermions

Yucheng Wang

Phys. Rev. E 98, 042128 (2018) - Published 15 October, 2018

Fickian yet non-Gaussian diffusion is not ubiquitous in soft matter

Alejandro Cuetos, Neftalí Morillo, and Alessandro Patti

Phys. Rev. E 98, 042129 (2018) - Published 17 October, 2018

Intrinsic ratchets: A Hamiltonian approach

A. V. Plyukhin

Phys. Rev. E 98, 042130 (2018) - Published 17 October, 2018

Optimal thermal rectification of heterojunctions under Fourier law

Yu Yang, Hongyuan Chen, Huan Wang, Nianbei Li, and Lifa Zhang

Phys. Rev. E 98, 042131 (2018) - Published 18 October, 2018

Reaction-subdiffusion in moving fluids

H. Zhang and G. H. Li

Phys. Rev. E 98, 042132 (2018) - Published 19 October, 2018

Mean-field theory of Bayesian clustering

Alexander Mozeika and Anthony C. C. Coolen

Phys. Rev. E 98, 042133 (2018) - Published 19 October, 2018

Analysis of vibrational normal modes for Coulomb clusters

Biswarup Ash, Chandan Dasgupta, and Amit Ghosal

Phys. Rev. E 98, 042134 (2018) - Published 22 October, 2018

Cyclization in finite random graphs

A. A. Lushnikov

Phys. Rev. E 98, 042135 (2018) - Published 19 October, 2018

Memory effects and Lévy walk dynamics in intracellular transport of cargoes

Sergei Fedotov, Nickolay Korabel, Thomas A. Waigh, Daniel Han, and Victoria J. Allan

Phys. Rev. E 98, 042136 (2018) - Published 22 October, 2018

Kinetics of orbitally shaken particles constrained to two dimensions

Dhananjay Ipparthi, Tijmen A. G. Hageman, Nicolas Cambier, Metin Sitti, Marco Dorigo, Leon Abelmann, and Massimo Mastrangeli

Phys. Rev. E 98, 042137 (2018) - Published 22 October, 2018

Work relations with measurement and feedback control on nonuniform temperature systems

Hideyuki Miyahara and Kazuyuki Aihara

Phys. Rev. E 98, 042138 (2018) - Published 23 October, 2018

Renewal theory with fat-tailed distributed sojourn times: Typical versus rare

Wanli Wang, Johannes H. P. Schulz, Weihua Deng, and Eli Barkai

Phys. Rev. E 98, 042139 (2018) - Published 24 October, 2018

Symmetries in the path integral formulation of the Langevin dynamics

Piotr Surówka and Piotr Witkowski

Phys. Rev. E 98, 042140 (2018) - Published 24 October, 2018

Feynman-Smoluchowski ratchet in an effective one-dimensional picture

Pavol Kalinay and František Slanina

Phys. Rev. E 98, 042141 (2018) - Published 25 October, 2018

Universal finite-size scaling function for kinetics of phase separation in mixtures with varying number of components

Suman Majumder, Subir K. Das, and Wolfhard Janke

Phys. Rev. E 98, 042142 (2018) - Published 25 October, 2018

First-passage distributions for the one-dimensional Fokker-Planck equation

Oriol Artime, Nagi Khalil, Raúl Toral, and Maxi San Miguel

Phys. Rev. E 98, 042143 (2018) - Published 26 October, 2018

Symbolic high-order Markov chains: Entropy and compressibility

S. S. Melnik and O. V. Usatenko

Phys. Rev. E 98, 042144 (2018) - Published 29 October, 2018

Residual entropies for three-dimensional frustrated spin systems with tensor networks

Laurens Vanderstraeten, Bram Vanhecke, and Frank Verstraete

Phys. Rev. E 98, 042145 (2018) - Published 29 October, 2018

Boundary conditions and the residual entropy of ice systems

M. V. Ferreyra and S. A. Grigera

Phys. Rev. E 98, 042146 (2018) - Published 30 October, 2018

Path integral and instanton calculus for stochastic jump processes with a finite number of states

Takashi Arai

Phys. Rev. E 98, 042147 (2018) - Published 31 October, 2018

Delay-induced stochastic bursting in excitable noisy systems

Chunming Zheng and Arkady Pikovsky

Phys. Rev. E 98, 042148 (2018) - Published 31 October, 2018

Using a combination of time delay and white noise, this paper shows that a simplified neuron model exhibits a pattern of coherent spikes that is labeled stochastic bursting. The authors study this analytically for cases where the characteristic time scales are markedly different, and provide an analysis based on the Fokker-Planck equation that they expect would be applicable to more complex, and realistic, systems.

Asymmetry relations and effective temperatures for biased Brownian gyrators

Sara Cerasoli, Victor Dotsenko, Gleb Oshanin, and Lamberto Rondoni

Phys. Rev. E 98, 042149 (2018) - Published 31 October, 2018

Transport via the Boltzmann equation with anomalous collisions

Ryosuke Yano and Hisayasu Kuroda

Phys. Rev. E 98, 042150 (2018) - Published 31 October, 2018

Nonlinear Dynamics and Chaos

Self-consistent method and steady states of second-order oscillators

Jian Gao and Konstantinos Efstathiou

Phys. Rev. E 98, 042201 (2018) - Published 1 October, 2018

Physically significant nonlocal nonlinear Schrödinger equation and its soliton solutions

Jianke Yang

Phys. Rev. E 98, 042202 (2018) - Published 2 October, 2018

Stabilization of trapless dipolar Bose-Einstein condensates by temporal modulation of the contact interaction

S. Sabari and Bishwajyoti Dey

Phys. Rev. E 98, 042203 (2018) - Published 2 October, 2018

Accelerated variational approach for searching cycles

Ding Wang, Peijie Wang, and Yueheng Lan

Phys. Rev. E 98, 042204 (2018) - Published 2 October, 2018

Solitary waves in bistable lattices with stiffness grading: Augmenting propagation control

Myungwon Hwang and Andres F. Arrieta

Phys. Rev. E 98, 042205 (2018) - Published 4 October, 2018

Exploring quantum chaos with a single nuclear spin

Vincent Mourik, Serwan Asaad, Hannes Firgau, Jarryd J. Pla, Catherine Holmes, Gerard J. Milburn, Jeffrey C. McCallum, and Andrea Morello

Phys. Rev. E 98, 042206 (2018) - Published 5 October, 2018

Symmetry-broken states on a spherical surface of coupled oscillators: From modulated coherence to spot and spiral chimeras

Ryong-Son Kim and Chol-Ung Choe

Phys. Rev. E 98, 042207 (2018) - Published 16 October, 2018

Long-wavelength solitary waves in Hertzian chains and their properties in different nonlinearity regimes

Stephen C. Anco and Michelle Przedborski

Phys. Rev. E 98, 042208 (2018) - Published 16 October, 2018

Symmetry breaking in competing single-well linear-nonlinear potentials

Dmitry A. Zezyulin, Mikhail E. Lebedev, Georgy L. Alfimov, and Boris A. Malomed

Phys. Rev. E 98, 042209 (2018) - Published 17 October, 2018

Strongly interacting soliton gas and formation of rogue waves

A. A. Gelash and D. S. Agafontsev

Phys. Rev. E 98, 042210 (2018) - Published 18 October, 2018

Soliton trapping, transmission, and wake in modulationally unstable media

Gino Biondini, Sitai Li, and Dionyssios Mantzavinos

Phys. Rev. E 98, 042211 (2018) - Published 18 October, 2018

Bifurcation structure of periodic patterns in the Lugiato-Lefever equation with anomalous dispersion

P. Parra-Rivas, D. Gomila, L. Gelens, and E. Knobloch

Phys. Rev. E 98, 042212 (2018) - Published 18 October, 2018

Origin of the 1/fα spectral noise in chaotic and regular quantum systems

Leonardo A. Pachón, Armando Relaño, Borja Peropadre, and Alán Aspuru-Guzik

Phys. Rev. E 98, 042213 (2018) - Published 19 October, 2018

Dynamics of a large system of spiking neurons with synaptic delay

Federico Devalle, Ernest Montbrió, and Diego Pazó

Phys. Rev. E 98, 042214 (2018) - Published 22 October, 2018

Bouncing states of a droplet on a liquid surface under generalized forcing

R. Chacón, P. J. Martínez, and P.-M. Binder

Phys. Rev. E 98, 042215 (2018) - Published 30 October, 2018

Optimal waveform for entrainment of a spiking neuron with minimum stimulating charge

Kestutis Pyragas, Augustinas P. Fedaravičius, Tatjana Pyragienė, and Peter A. Tass

Phys. Rev. E 98, 042216 (2018) - Published 31 October, 2018

Floquet analysis of a fractal-spectrum-generating periodically driven quantum system

Rashmi Jangid Sharma, Tapomoy Guha Sarkar, and Jayendra N. Bandyopadhyay

Phys. Rev. E 98, 042217 (2018) - Published 31 October, 2018

Networks and Complex Systems

Mutation-selection stationary distribution in structured populations

Sedigheh Yagoobi, Hosna Yousefi, and Keivan Aghababaei Samani

Phys. Rev. E 98, 042301 (2018) - Published 2 October, 2018

In-phase synchronization in complex oscillator networks by adaptive delayed feedback control

Viktor Novičenko and Irmantas Ratas

Phys. Rev. E 98, 042302 (2018) - Published 5 October, 2018

Universality and scaling laws in the cascading failure model with healing

Marcell Stippinger and János Kertész

Phys. Rev. E 98, 042303 (2018) - Published 8 October, 2018

Weight thresholding on complex networks

Xiaoran Yan, Lucas G. S. Jeub, Alessandro Flammini, Filippo Radicchi, and Santo Fortunato

Phys. Rev. E 98, 042304 (2018) - Published 8 October, 2018

Evolutionary hypergame dynamics

Junjie Jiang, Yu-Zhong Chen, Zi-Gang Huang, and Ying-Cheng Lai

Phys. Rev. E 98, 042305 (2018) - Published 8 October, 2018

Uniform redundancy allocation maximizes the robustness of flow networks against cascading failures

Omur Ozel, Bruno Sinopoli, and Osman Yağan

Phys. Rev. E 98, 042306 (2018) - Published 8 October, 2018

Impact on the topology of power-law networks from anisotropic and localized access to information

Zhenfeng Cao, Zhou He, and Neil F. Johnson

Phys. Rev. E 98, 042307 (2018) - Published 9 October, 2018

Complex self-sustained oscillation patterns in modular excitable networks

Jason Danison and Miguel Perez

Phys. Rev. E 98, 042308 (2018) - Published 22 October, 2018

Simulation of pedestrian single-lane movement by a biped model

Zhongyi Huang, Mohcine Chraibi, and Weiguo Song

Phys. Rev. E 98, 042309 (2018) - Published 23 October, 2018

Information processing in a simple one-step cascade

Mintu Nandi, Ayan Biswas, Suman K Banik, and Pinaki Chaudhury

Phys. Rev. E 98, 042310 (2018) - Published 26 October, 2018

Random active path model of deep neural networks with diluted binary synapses

Haiping Huang and Alireza Goudarzi

Phys. Rev. E 98, 042311 (2018) - Published 26 October, 2018

Feedback-induced critical behavior in binary propagation on complex networks

Junhao Liang and Tianshou Zhou

Phys. Rev. E 98, 042312 (2018) - Published 29 October, 2018

Network topology near criticality in adaptive epidemics

Leonhard Horstmeyer, Christian Kuehn, and Stefan Thurner

Phys. Rev. E 98, 042313 (2018) - Published 29 October, 2018

Globalization in a nutshell

Kim Sneppen and Stefan Bornholdt

Phys. Rev. E 98, 042314 (2018) - Published 29 October, 2018

Unraveling the structure of treelike networks from first-passage times of lazy random walkers

M. Reza Shaebani, Robin Jose, Christian Sand, and Ludger Santen

Phys. Rev. E 98, 042315 (2018) - Published 31 October, 2018

Biological Physics

Chemotaxis emerges as the optimal solution to cooperative search games

Alberto Pezzotta, Matteo Adorisio, and Antonio Celani

Phys. Rev. E 98, 042401 (2018) - Published 1 October, 2018

Entropy evaluation sheds light on ecosystem complexity

Mattia Miotto and Lorenzo Monacelli

Phys. Rev. E 98, 042402 (2018) - Published 3 October, 2018

Imbibition in plant seeds

Jean-François Louf, Yi Zheng, Aradhana Kumar, Tomas Bohr, Carsten Gundlach, Jesper Harholt, Henning Friis Poulsen, and Kaare H. Jensen

Phys. Rev. E 98, 042403 (2018) - Published 4 October, 2018

Collective behavior in groups of self-propelled particles with active and passive sensing inspired by animal echolocation

Masoud Jahromi Shirazi and Nicole Abaid

Phys. Rev. E 98, 042404 (2018) - Published 8 October, 2018

Effect of time-correlated noises on cell-fate induction

Xiu-Deng Zheng, Jie Mei, Da-Hua Chen, and Yi Tao

Phys. Rev. E 98, 042406 (2018) - Published 11 October, 2018

Mapping vesicle dynamics onto that of a rigid sphere in five dimensions

A. Aarab, M. Guedda, N. Alaa, and C. Misbah

Phys. Rev. E 98, 042407 (2018) - Published 11 October, 2018

Correlation of an antimicrobial peptide's potency and its influences on membrane elasticity

Wen-Fang Chang, Si-Han Chen, and Yi-Fan Chen

Phys. Rev. E 98, 042408 (2018) - Published 15 October, 2018

Oxygen dynamics in a two-dimensional microbial ecosystem

Frank Tejera, Albert Libchaber, and Alexander P. Petroff

Phys. Rev. E 98, 042409 (2018) - Published 16 October, 2018

Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

Ulisse Ferrari, Stéphane Deny, Matthew Chalk, Gašper Tkačik, Olivier Marre, and Thierry Mora

Phys. Rev. E 98, 042410 (2018) - Published 17 October, 2018

Anomalous, non-Gaussian, viscoelastic, and age-dependent dynamics of histonelike nucleoid-structuring proteins in live Escherichia coli

Asmaa A. Sadoon and Yong Wang

Phys. Rev. E 98, 042411 (2018) - Published 19 October, 2018

The dynamics of a particular protein inside live E. coli bacteria displays unusual behavior, with diffusion coefficients that follow a power law and a non-Gaussian distribution of displacements. The authors also find that the rheological behavior of the cytoplasm differs from that of a homogeneous protein solution, and exhibits a liquid-glass transition.

Dynamics and energy landscape of DNA plectoneme nucleation

Philipp U. Walker, Willem Vanderlinden, and Jan Lipfert

Phys. Rev. E 98, 042412 (2018) - Published 23 October, 2018

Dynamics of cortical activity eigenmodes including standing, traveling, and rotating waves

Natasha C. Gabay, Tahereh Babaie-Janvier, and P. A. Robinson

Phys. Rev. E 98, 042413 (2018) - Published 23 October, 2018

Generation of mixed-mode stochastic oscillations in a hair bundle model

Irina Bashkirtseva and Lev Ryashko

Phys. Rev. E 98, 042414 (2018) - Published 24 October, 2018

Strength and stability of active ligand-receptor bonds: A microtubule attached to a wall by molecular motor tethers

Dipanwita Ghanti, Raymond W. Friddle, and Debashish Chowdhury

Phys. Rev. E 98, 042415 (2018) - Published 26 October, 2018

Large-deviation properties of the extended Moran model

Alexander K. Hartmann and Thierry Huillet

Phys. Rev. E 98, 042416 (2018) - Published 26 October, 2018

Kinky DNA in solution: Small-angle-scattering study of a nucleosome positioning sequence

Torben Schindler, Adrián González, Ramachandran Boopathi, Marta Marty Roda, Lorena Romero-Santacreu, Andrew Wildes, Lionel Porcar, Anne Martel, Nikos Theodorakopoulos, Santiago Cuesta-López, Dimitar Angelov, Tobias Unruh, and Michel Peyrard

Phys. Rev. E 98, 042417 (2018) - Published 31 October, 2018

Confluent and nonconfluent phases in a model of cell tissue

Eial Teomy, David A. Kessler, and Herbert Levine

Phys. Rev. E 98, 042418 (2018) - Published 31 October, 2018

This paper presents a Voronoi analysis of cellular arrangements where the condition of confluency, namely that there is no free space between cells, is relaxed. As a result, a range of new phases are uncovered, as well as the conditions to have transitions between them. These result may have further implications in understanding the natural behavior of collections of cells.

Impacts of multiflagellarity on stability and speed of bacterial locomotion

Frank T. M. Nguyen and Michael D. Graham

Phys. Rev. E 98, 042419 (2018) - Published 31 October, 2018

Polymers

Structure and dynamics of a self-propelled semiflexible filament

Shalabh K. Anand and Sunil P. Singh

Phys. Rev. E 98, 042501 (2018) - Published 3 October, 2018

Random polymers and generalized urn processes

Simone Franchini and Riccardo Balzan

Phys. Rev. E 98, 042502 (2018) - Published 12 October, 2018

Effects of nanoparticles on the stability of polymer fibers

Taejin Kwon and Bong June Sung

Phys. Rev. E 98, 042503 (2018) - Published 31 October, 2018

Colloids, Complex Fluids, and Active Matter

Two inherent crossovers of the diffusion process in glass-forming liquids

Maiko Kofu, Antonio Faraone, Madhusudan Tyagi, Michihiro Nagao, and Osamu Yamamuro

Phys. Rev. E 98, 042601 (2018) - Published 5 October, 2018

Rheology of colloidal suspensions in confined flow: Treatment of hydrodynamic interactions in particle-based simulations inspired by dynamical density functional theory

Zahera Jabeen, Hsiu-Yu Yu, David M. Eckmann, Portonovo S. Ayyaswamy, and Ravi Radhakrishnan

Phys. Rev. E 98, 042602 (2018) - Published 9 October, 2018

Rheological behavior of colloidal suspension with long-range interactions

S. Arietaleaniz, P. Malgaretti, I. Pagonabarraga, and R. C. Hidalgo

Phys. Rev. E 98, 042603 (2018) - Published 10 October, 2018

Time-delayed feedback control of shear-driven micellar systems

Benjamin von Lospichl and Sabine H. L. Klapp

Phys. Rev. E 98, 042605 (2018) - Published 11 October, 2018

Spectrum of structure for jammed and unjammed soft disks

A. T. Chieco, M. Zu, A. J. Liu, N. Xu, and D. J. Durian

Phys. Rev. E 98, 042606 (2018) - Published 17 October, 2018

Order parameters in the diffusion of rods through two- and three-dimensional fixed scatterers

Benjamin D. Mahala and Rigoberto Hernandez

Phys. Rev. E 98, 042607 (2018) - Published 29 October, 2018

Liquid Crystals

Liquid crystal phase behavior of a DNA dodecamer and the chromonic dye Sunset Yellow

Joseph G. Theis, Gregory P. Smith, Youngwoo Yi, David M. Walba, and Noel A. Clark

Phys. Rev. E 98, 042701 (2018) - Published 8 October, 2018

Light scattering by cholesteric skyrmions

G. De Matteis, D. Delle Side, L. Martina, and V. Turco

Phys. Rev. E 98, 042702 (2018) - Published 18 October, 2018

Dynamic interplay of nematic, magnetic, and tetrahedral order in ferromagnetic nematic phases

Tilen Potisk, Harald Pleiner, and Helmut R. Brand

Phys. Rev. E 98, 042703 (2018) - Published 25 October, 2018

Probing the sensitivity of orientational ordering as a way towards absolute enantiorecognition: Helical-particle solutes in helical-particle nematic solvents

Jaime Gutiérrez Bojart, Christian D'Urso, Giorgio Celebre, and Giorgio Cinacchi

Phys. Rev. E 98, 042704 (2018) - Published 30 October, 2018

Films and Interfaces

Impact of anisotropic interactions on nonequilibrium cluster growth at surfaces

Thomas Martynec and Sabine H. L. Klapp

Phys. Rev. E 98, 042801 (2018) - Published 17 October, 2018

Wetting states of two-dimensional drops under gravity

Cunjing Lv and Songlin Shi

Phys. Rev. E 98, 042802 (2018) - Published 25 October, 2018

Granular Materials

Dynamics and scaling laws of underwater granular collapse with varying aspect ratios

L. Jing, G. C. Yang, C. Y. Kwok, and Y. D. Sobral

Phys. Rev. E 98, 042901 (2018) - Published 9 October, 2018

Experimental observation of two regimes of expansion in localized fluidization of a granular medium

S. E. Mena, F. Brunier-Coulin, J. S. Curtis, and P. Philippe

Phys. Rev. E 98, 042902 (2018) - Published 10 October, 2018

Coupling effects of particle size and shape on improving the density of disordered polydisperse packings

Ye Yuan, Lufeng Liu, Yuzhou Zhuang, Weiwei Jin, and Shuixiang Li

Phys. Rev. E 98, 042903 (2018) - Published 10 October, 2018

Stress-strain rate relation in plug-free flow of dense granular fluids: A first-principles derivation

Moshe Schwartz and Raphael Blumenfeld

Phys. Rev. E 98, 042905 (2018) - Published 15 October, 2018

Stress anisotropy in shear-jammed packings of frictionless disks

Sheng Chen, Thibault Bertrand, Weiwei Jin, Mark D. Shattuck, and Corey S. O'Hern

Phys. Rev. E 98, 042906 (2018) - Published 15 October, 2018

Amplification of stick-slip events through lubricated contacts in consolidated granular media

Belfor Galaz, David Espíndola, and Francisco Melo

Phys. Rev. E 98, 042907 (2018) - Published 24 October, 2018

Simple random matrix model for the vibrational spectrum of structural glasses

E. Stanifer, P. K. Morse, A. A. Middleton, and M. L. Manning

Phys. Rev. E 98, 042908 (2018) - Published 25 October, 2018

Flow impact on granular force chains and induced instability

Antoine Wautier, Stéphane Bonelli, and François Nicot

Phys. Rev. E 98, 042909 (2018) - Published 30 October, 2018

Densest versus jammed packings of two-dimensional bent-core trimers

Austin D. Griffith and Robert S. Hoy

Phys. Rev. E 98, 042910 (2018) - Published 31 October, 2018

Solid Mechanics

Modular and programmable material systems drawing from the architecture of skeletal muscle

Narayanan Kidambi, Ryan L. Harne, and Kon-Well Wang

Phys. Rev. E 98, 043001 (2018) - Published 9 October, 2018

A specially designed modular material can adopt many force-generating and energy-storing postures, which could be useful for soft robotics.

Statistical model for diffusion-mediated recovery of dislocation and point-defect microstructure

I. Rovelli, S. L. Dudarev, and A. P. Sutton

Phys. Rev. E 98, 043002 (2018) - Published 15 October, 2018

Corner singularities and shape of stretched elastic sheets

Julien Chopin, Andreea Panaitescu, and Arshad Kudrolli

Phys. Rev. E 98, 043003 (2018) - Published 17 October, 2018

Fluid Dynamics

Self-assembly of a drop pattern from a two-dimensional grid of nanometric metallic filaments

Ingrith Cuellar, Pablo D. Ravazzoli, Javier A. Diez, Alejandro G. González, Nicholas A. Roberts, Jason D. Fowlkes, Philip D. Rack, and Lou Kondic

Phys. Rev. E 98, 043101 (2018) - Published 4 October, 2018

Influence of wettability on phase connectivity and electrical resistivity

Zhishang Liu, James E. McClure, and Ryan T. Armstrong

Phys. Rev. E 98, 043102 (2018) - Published 8 October, 2018

Trapping of plasma enabled by pycnoclinic acoustic force

John P. Koulakis, Seth Pree, Alexander L. F. Thornton, and Seth Putterman

Phys. Rev. E 98, 043103 (2018) - Published 12 October, 2018

Size and shape affect swimming of a triangular bead-spring microswimmer

Mohd Suhail Rizvi, Alexander Farutin, and Chaouqi Misbah

Phys. Rev. E 98, 043104 (2018) - Published 12 October, 2018

Mach number effect on the instability of a planar interface subjected to a rippled shock

Wenbin Zhang, Qiang Wu, Liyong Zou, Xianxu Zheng, Xinzhu Li, Xisheng Luo, and Juchun Ding

Phys. Rev. E 98, 043105 (2018) - Published 12 October, 2018

Thermally induced interfacial instabilities and pattern formation in confined liquid nanofilms

Hadi Nazaripoor, M. R. Flynn, Charles R. Koch, and Mohtada Sadrzadeh

Phys. Rev. E 98, 043106 (2018) - Published 15 October, 2018

Beyond the coffee-ring effect: Pattern formation by wetting and spreading of drops

Dileep Mampallil, Meenakshi Sharma, Ashwini Sen, and Shubham Sinha

Phys. Rev. E 98, 043107 (2018) - Published 19 October, 2018

Force on a compressible sphere and the resonance of a bubble in standing surface acoustic waves

Shen Liang, Wang Chaohui, and Hu Qiao

Phys. Rev. E 98, 043108 (2018) - Published 23 October, 2018

Large-eddy simulations of turbulent thermal convection using renormalized viscosity and thermal diffusivity

Sumit Vashishtha, Mahendra K. Verma, and Roshan Samuel

Phys. Rev. E 98, 043109 (2018) - Published 24 October, 2018

Slip-flow lattice-Boltzmann simulations in ducts and porous media: A full rehabilitation of spurious velocities

M. Aminpour, S. A. Galindo-Torres, A. Scheuermann, and L. Li

Phys. Rev. E 98, 043110 (2018) - Published 29 October, 2018

Vesicle dynamics in confined steady and harmonically modulated Poiseuille flows

Zakaria Boujja, Chaouqi Misbah, Hamid Ez-Zahraouy, Abdelilah Benyoussef, Thomas John, Christian Wagner, and Martin Michael Müller

Phys. Rev. E 98, 043111 (2018) - Published 29 October, 2018

Plasma Physics

Hydrodynamic disassembly and expansion of electron-beam-heated warm dense copper

J. E. Coleman, H. E. Morris, M. S. Jakulewicz, H. L. Andrews, and M. E. Briggs

Phys. Rev. E 98, 043201 (2018) - Published 8 October, 2018

Ray-based modeling of cross-beam energy transfer at caustics

R. K. Follett, J. G. Shaw, J. F. Myatt, V. N. Goncharov, D. H. Edgell, D. H. Froula, and J. P. Palastro

Phys. Rev. E 98, 043202 (2018) - Published 9 October, 2018

Radiative and atomic properties of C and CH plasmas in the warm-dense-matter regime

T.-G. Lee, M. Busquet, M. Klapisch, J. W. Bates, A. J. Schmitt, S. X. Hu, and J. Giuliani

Phys. Rev. E 98, 043203 (2018) - Published 17 October, 2018

Equation of state of carbon in the warm dense matter regime from density-functional theory molecular dynamics

J-F. Danel, L. Kazandjian, and R. Piron

Phys. Rev. E 98, 043204 (2018) - Published 18 October, 2018

Kinetic turbulence in fast three-dimensional collisionless guide-field magnetic reconnection

P. A. Muñoz and J. Büchner

Phys. Rev. E 98, 043205 (2018) - Published 23 October, 2018

Coherent ultra-broadband laser-assisted injection radiation from a laser plasma accelerator

B. Miao, L. Feder, J. Elle, A. J. Goers, D. Woodbury, F. Salehi, J. K. Wahlstrand, and H. M. Milchberg

Phys. Rev. E 98, 043206 (2018) - Published 23 October, 2018

Relativistic-electron-driven magnetic reconnection in the laboratory

A. E. Raymond, C. F. Dong, A. McKelvey, C. Zulick, N. Alexander, A. Bhattacharjee, P. T. Campbell, H. Chen, V. Chvykov, E. Del Rio, P. Fitzsimmons, W. Fox, B. Hou, A. Maksimchuk, C. Mileham, J. Nees, P. M. Nilson, C. Stoeckl, A. G. R. Thomas, M. S. Wei, V. Yanovsky, K. Krushelnick, and L. Willingale

Phys. Rev. E 98, 043207 (2018) - Published 24 October, 2018

Mitigation of stimulated Raman scattering in the kinetic regime by external magnetic fields

B. J. Winjum, F. S. Tsung, and W. B. Mori

Phys. Rev. E 98, 043208 (2018) - Published 29 October, 2018

Computational Physics

Lamellar eutectic growth under forced convection: A phase-field lattice-Boltzmann study based on a modified Jackson-Hunt theory

Ang Zhang, Jinglian Du, Zhipeng Guo, and Shoumei Xiong

Phys. Rev. E 98, 043301 (2018) - Published 2 October, 2018

High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method

L. A. Hegele, Jr., A. Scagliarini, M. Sbragaglia, K. K. Mattila, P. C. Philippi, D. F. Puleri, J. Gounley, and A. Randles

Phys. Rev. E 98, 043302 (2018) - Published 4 October, 2018

Columnar structures of soft spheres: Metastability and hysteresis

A. Mughal, J. Winkelmann, D. Weaire, and S. Hutzler

Phys. Rev. E 98, 043303 (2018) - Published 5 October, 2018

Standard error estimation by an automated blocking method

Marius Jonsson

Phys. Rev. E 98, 043304 (2018) - Published 15 October, 2018

Lattice Boltzmann simulation of mixtures with multicomponent van der Waals equation of state

Kent S. Ridl and Alexander J. Wagner

Phys. Rev. E 98, 043305 (2018) - Published 17 October, 2018

Rational hybrid Monte Carlo with block solvers and multiple pseudofermions

Philippe de Forcrand and Liam Keegan

Phys. Rev. E 98, 043306 (2018) - Published 18 October, 2018

Consistency and convergence of simulation schemes in information field dynamics

Martin Dupont and Torsten Enßlin

Phys. Rev. E 98, 043307 (2018) - Published 22 October, 2018

Numerical inversion methods for recovering negative amplitudes in two-dimensional nuclear magnetic resonance relaxation-time correlations

Thusara C. Chandrasekera and Jonathan Mitchell

Phys. Rev. E 98, 043308 (2018) - Published 25 October, 2018

Lattice Boltzmann method for conjugated heat and mass transfer with general interfacial conditions

Yu-Tong Mu, Zhao-Lin Gu, Pu He, and Wen-Quan Tao

Phys. Rev. E 98, 043309 (2018) - Published 29 October, 2018

Three-dimensional porous structure reconstruction based on structural local similarity via sparse representation on micro-computed-tomography images

Yuzhu Wang, Ji-Youn Arns, Sheikh S. Rahman, and Christoph H. Arns

Phys. Rev. E 98, 043310 (2018) - Published 29 October, 2018

Recovering the past history of natural recording media by Bayesian inversion

Tatsu Kuwatani, Hiromichi Nagao, Shin-ichi Ito, Atsushi Okamoto, Kenta Yoshida, and Takamoto Okudaira

Phys. Rev. E 98, 043311 (2018) - Published 31 October, 2018

ERRATA

Publisher's Note: Revisiting universality of the liquid-gas critical point in two dimensions [Phys. Rev. E 96, 062124 (2017)]

Max Yarmolinsky and Anatoly Kuklov

Phys. Rev. E 98, 049901 (2018) - Published 29 October, 2018

Erratum: Spontaneous change in trajectory patterns of a self-propelled oil droplet at the air-surfactant solution interface [Phys. Rev. E 91, 032406 (2015)]

Shinpei Tanaka, Yoshimi Sogabe, and Satoshi Nakata

Phys. Rev. E 98, 049903 (2018) - Published 30 October, 2018

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