HIGHLIGHTED ARTICLES

High-precision estimate of the hydrodynamic radius for self-avoiding walks

Nathan Clisby and Burkhard Dünweg

Phys. Rev. E 94, 052102 (2016) - Published 1 November, 2016

The authors develop a sampling scheme that enables efficient estimation of averages of observables in self-avoiding walks. A key insight is that the hydrodynamic radius does not need to be calculated exactly in order to obtain accurate estimates of its expectation value. Their high-resolution simulation study provides a highly accurate estimate of a universal asymptotic amplitude ratio, which improves previous estimates by several orders of magnitude.

Solvent-mediated forces in critical fluids

Pietro Anzini and Alberto Parola

Phys. Rev. E 94, 052113 (2016) - Published 7 November, 2016

This paper presents a theoretical approach to the effective interaction between two planar walls immersed in a fluid, using a modified density-functional theory that is valid over much of the phase diagram including the critical point. The authors study the crossover between the short-ranged depletion force that arises as a result of volume exclusion, and the onset of a long-ranged critical Casimir force due to the confinement of the density fluctuations, as the system approaches the critical point.

Work, work fluctuations, and the work distribution in a thermal nonequilibrium steady state

T. R. Kirkpatrick, J. R. Dorfman, and J. V. Sengers

Phys. Rev. E 94, 052128 (2016) - Published 17 November, 2016

This paper introduces the concept of Casimir work in nonequilibrium steady states. The authors analyze the fluctuation forces in a fluid that is confined between two plates and in which a constant temperature gradient is maintained. Due to the long range of the correlations in such a nonequilibrium system, the properties of the work are quite different compared to an equilibrium system.

Equivalence between modularity optimization and maximum likelihood methods for community detection

M. E. J. Newman

Phys. Rev. E 94, 052315 (2016) - Published 22 November, 2016

This paper examines two common methods of community detection in networks, namely modularity maximization and the maximum likelihood method. The author shows an equivalence between these two methods, and explores some of its consequences.

Fragmentation and shear band formation by slow compression of brittle porous media

Gergő Pál, Zoltán Jánosi, Ferenc Kun, and Ian G. Main

Phys. Rev. E 94, 053003 (2016) - Published 16 November, 2016

The authors report a numerical study of fragmentation of disordered granular porous media. They use discrete-element simulation to study fragmentation in a shear band that occurs when a cylindrical sample is slowly compressed. Their results for the position, orientation, and width of the central shear band and the spatial and mass distributions of the fragments generally agree with experimental and field observations.

RAPID COMMUNICATIONS

Statistical Physics

Eigenvalue spectra of large correlated random matrices

Alexander Kuczala and Tatyana O. Sharpee

Phys. Rev. E 94, 050101(R) (2016) - Published 17 November, 2016

Biological Physics

Determining conduction patterns on a sparse electrode grid: Implications for the analysis of clinical arrhythmias

David Vidmar, Sanjiv M. Narayan, David E. Krummen, and Wouter-Jan Rappel

Phys. Rev. E 94, 050401(R) (2016) - Published 9 November, 2016

Characterizing folding funnels with replica exchange Wang-Landau simulation of lattice proteins

Guangjie Shi, Thomas Wüst, and David P. Landau

Phys. Rev. E 94, 050402(R) (2016) - Published 15 November, 2016

Colloids, Complex Fluids, and Active Matter

Analysis of ionic conductance of carbon nanotubes

P. M. Biesheuvel and M. Z. Bazant

Phys. Rev. E 94, 050601(R) (2016) - Published 1 November, 2016

Mesoscale pattern formation of self-propelled rods with velocity reversal

Robert Großmann, Fernando Peruani, and Markus Bär

Phys. Rev. E 94, 050602(R) (2016) - Published 22 November, 2016

Anomalous structural transition of confined hard squares

Péter Gurin, Szabolcs Varga, and Gerardo Odriozola

Phys. Rev. E 94, 050603(R) (2016) - Published 28 November, 2016

Films and Interfaces

Universality and dependence on initial conditions in the class of the nonlinear molecular beam epitaxy equation

I. S. S. Carrasco and T. J. Oliveira

Phys. Rev. E 94, 050801(R) (2016) - Published 28 November, 2016

Solid Mechanics

Emergent interparticle interactions in thermal amorphous solids

Oleg Gendelman, Edan Lerner, Yoav G. Pollack, Itamar Procaccia, Corrado Rainone, and Birte Riechers

Phys. Rev. E 94, 051001(R) (2016) - Published 29 November, 2016

Plasma Physics

Laser propagation measurements in long-scale-length underdense plasmas relevant to magnetized liner inertial fusion

A. J. Harvey-Thompson, A. B. Sefkow, M. S. Wei, T. Nagayama, E. M. Campbell, B. E. Blue, R. F. Heeter, J. M. Koning, K. J. Peterson, and A. Schmitt

Phys. Rev. E 94, 051201(R) (2016) - Published 2 November, 2016

How mesoscopic staircases condense to macroscopic barriers in confined plasma turbulence

Arash Ashourvan and P. H. Diamond

Phys. Rev. E 94, 051202(R) (2016) - Published 18 November, 2016

Linking dissipation-induced instabilities with nonmodal growth: The case of helical magnetorotational instability

G. Mamatsashvili and F. Stefani

Phys. Rev. E 94, 051203(R) (2016) - Published 23 November, 2016

ARTICLES

Statistical Physics

Vibration-induced coherence enhancement of the performance of a biological quantum heat engine

Hong-Bin Chen, Pin-Yi Chiu, and Yueh-Nan Chen

Phys. Rev. E 94, 052101 (2016) - Published 1 November, 2016

High-precision estimate of the hydrodynamic radius for self-avoiding walks

Nathan Clisby and Burkhard Dünweg

Phys. Rev. E 94, 052102 (2016) - Published 1 November, 2016

The authors develop a sampling scheme that enables efficient estimation of averages of observables in self-avoiding walks. A key insight is that the hydrodynamic radius does not need to be calculated exactly in order to obtain accurate estimates of its expectation value. Their high-resolution simulation study provides a highly accurate estimate of a universal asymptotic amplitude ratio, which improves previous estimates by several orders of magnitude.

Equivalent-neighbor Potts models in two dimensions

Xiaofeng Qian, Youjin Deng, Yuhai Liu, Wenan Guo, and Henk W. J. Blöte

Phys. Rev. E 94, 052103 (2016) - Published 1 November, 2016

Tightening the uncertainty principle for stochastic currents

Matteo Polettini, Alexandre Lazarescu, and Massimiliano Esposito

Phys. Rev. E 94, 052104 (2016) - Published 2 November, 2016

Extreme-value statistics of fractional Brownian motion bridges

Mathieu Delorme and Kay Jörg Wiese

Phys. Rev. E 94, 052105 (2016) - Published 2 November, 2016

Thermodynamic geometry of minimum-dissipation driven barrier crossing

David A. Sivak and Gavin E. Crooks

Phys. Rev. E 94, 052106 (2016) - Published 3 November, 2016

Enantiodromic effective generators of a Markov jump process with Gallavotti-Cohen symmetry

S. A. A. Terohid, P. Torkaman, and F. H. Jafarpour

Phys. Rev. E 94, 052107 (2016) - Published 4 November, 2016

Emergent kinetic constraints, ergodicity breaking, and cooperative dynamics in noisy quantum systems

B. Everest, M. Marcuzzi, J. P. Garrahan, and I. Lesanovsky

Phys. Rev. E 94, 052108 (2016) - Published 4 November, 2016

Heat dissipation and information flow for delayed bistable Langevin systems near coherence resonance

Tiejun Xiao

Phys. Rev. E 94, 052109 (2016) - Published 4 November, 2016

Excited-state quantum phase transitions in the two-spin elliptic Gaudin model

Armando Relaño, Carlos Esebbag, and Jorge Dukelsky

Phys. Rev. E 94, 052110 (2016) - Published 4 November, 2016

Stochastic bifurcations in the nonlinear parallel Ising model

Franco Bagnoli and Raúl Rechtman

Phys. Rev. E 94, 052111 (2016) - Published 4 November, 2016

Stochastic disks that roll

Miranda Holmes-Cerfon

Phys. Rev. E 94, 052112 (2016) - Published 7 November, 2016

Solvent-mediated forces in critical fluids

Pietro Anzini and Alberto Parola

Phys. Rev. E 94, 052113 (2016) - Published 7 November, 2016

This paper presents a theoretical approach to the effective interaction between two planar walls immersed in a fluid, using a modified density-functional theory that is valid over much of the phase diagram including the critical point. The authors study the crossover between the short-ranged depletion force that arises as a result of volume exclusion, and the onset of a long-ranged critical Casimir force due to the confinement of the density fluctuations, as the system approaches the critical point.

Efficiency and its bounds of minimally nonlinear irreversible heat engines at arbitrary power

Rui Long and Wei Liu

Phys. Rev. E 94, 052114 (2016) - Published 8 November, 2016

Ergostatting and thermostatting at a fixed point

Helmuth Hüffel and Saša Ilijić

Phys. Rev. E 94, 052115 (2016) - Published 9 November, 2016

Network inference in the nonequilibrium steady state

Simon L. Dettmer, H. Chau Nguyen, and Johannes Berg

Phys. Rev. E 94, 052116 (2016) - Published 10 November, 2016

Conservation laws and symmetries in stochastic thermodynamics

Matteo Polettini, Gregory Bulnes-Cuetara, and Massimiliano Esposito

Phys. Rev. E 94, 052117 (2016) - Published 10 November, 2016

Time-dependent probability density function in cubic stochastic processes

Eun-jin Kim and Rainer Hollerbach

Phys. Rev. E 94, 052118 (2016) - Published 10 November, 2016

Fidelity of the diagonal ensemble signals the many-body localization transition

Taotao Hu, Kang Xue, Xiaodan Li, Yan Zhang, and Hang Ren

Phys. Rev. E 94, 052119 (2016) - Published 11 November, 2016

Convex hulls of multiple random walks: A large-deviation study

Timo Dewenter, Gunnar Claussen, Alexander K. Hartmann, and Satya N. Majumdar

Phys. Rev. E 94, 052120 (2016) - Published 14 November, 2016

Linear irreversible thermodynamics and Onsager reciprocity for information-driven engines

Shumpei Yamamoto, Sosuke Ito, Naoto Shiraishi, and Takahiro Sagawa

Phys. Rev. E 94, 052121 (2016) - Published 15 November, 2016

Work extraction and energy storage in the Dicke model

Lorenzo Fusco, Mauro Paternostro, and Gabriele De Chiara

Phys. Rev. E 94, 052122 (2016) - Published 15 November, 2016

Phonon transport in a one-dimensional harmonic chain with long-range interaction and mass disorder

Hangbo Zhou, Gang Zhang, Jian-Sheng Wang, and Yong-Wei Zhang

Phys. Rev. E 94, 052123 (2016) - Published 15 November, 2016

Scaling relations in the diffusive infiltration in fractals

F. D. A. Aarão Reis

Phys. Rev. E 94, 052124 (2016) - Published 16 November, 2016

Limitations of discrete-time approaches to continuous-time contagion dynamics

Peter G. Fennell, Sergey Melnik, and James P. Gleeson

Phys. Rev. E 94, 052125 (2016) - Published 16 November, 2016

Patterning in systems driven by nonlocal external forces

L. Luneville, K. Mallick, V. Pontikis, and D. Simeone

Phys. Rev. E 94, 052126 (2016) - Published 16 November, 2016

Local discretization method for overdamped Brownian motion on a potential with multiple deep wells

P. T. T. Nguyen, K. J. Challis, and M. W. Jack

Phys. Rev. E 94, 052127 (2016) - Published 17 November, 2016

Work, work fluctuations, and the work distribution in a thermal nonequilibrium steady state

T. R. Kirkpatrick, J. R. Dorfman, and J. V. Sengers

Phys. Rev. E 94, 052128 (2016) - Published 17 November, 2016

This paper introduces the concept of Casimir work in nonequilibrium steady states. The authors analyze the fluctuation forces in a fluid that is confined between two plates and in which a constant temperature gradient is maintained. Due to the long range of the correlations in such a nonequilibrium system, the properties of the work are quite different compared to an equilibrium system.

Onsager coefficients for systems with periodic potentials

Alexandre Rosas, Christian Van den Broeck, and Katja Lindenberg

Phys. Rev. E 94, 052129 (2016) - Published 17 November, 2016

Aging Wiener-Khinchin theorem and critical exponents of 1/fβ noise

N. Leibovich, A. Dechant, E. Lutz, and E. Barkai

Phys. Rev. E 94, 052130 (2016) - Published 17 November, 2016

Thermal conductance of one-dimensional materials calculated with typical lattice models

Chunyi Zhang, Wei Kang, and Jianxiang Wang

Phys. Rev. E 94, 052131 (2016) - Published 18 November, 2016

Metastability in an open quantum Ising model

Dominic C. Rose, Katarzyna Macieszczak, Igor Lesanovsky, and Juan P. Garrahan

Phys. Rev. E 94, 052132 (2016) - Published 18 November, 2016

Suppressing escape events in maps of the unit interval with demographic noise

César Parra-Rojas, Joseph D. Challenger, Duccio Fanelli, and Alan J. McKane

Phys. Rev. E 94, 052133 (2016) - Published 21 November, 2016

Elephant random walks and their connection to Pólya-type urns

Erich Baur and Jean Bertoin

Phys. Rev. E 94, 052134 (2016) - Published 21 November, 2016

Avalanche statistics from data with low time resolution

Michael LeBlanc, Aya Nawano, Wendelin J. Wright, Xiaojun Gu, J. T. Uhl, and Karin A. Dahmen

Phys. Rev. E 94, 052135 (2016) - Published 22 November, 2016

Identifying ergodicity breaking for fractional anomalous diffusion: Criteria for minimal trajectory length

Hanna Loch-Olszewska, Grzegorz Sikora, Joanna Janczura, and Aleksander Weron

Phys. Rev. E 94, 052136 (2016) - Published 22 November, 2016

Heat conduction in a chain of colliding particles with a stiff repulsive potential

Oleg V. Gendelman and Alexander V. Savin

Phys. Rev. E 94, 052137 (2016) - Published 23 November, 2016

Temporal disorder does not forbid discontinuous absorbing phase transitions in low-dimensional systems

M. M. de Oliveira and C. E. Fiore

Phys. Rev. E 94, 052138 (2016) - Published 23 November, 2016

Pinning-depinning transition in a stochastic growth model for the evolution of cell colony fronts in a disordered medium

Belén Moglia, Ezequiel V. Albano, and Nara Guisoni

Phys. Rev. E 94, 052139 (2016) - Published 23 November, 2016

High-temperature ratchets with sawtooth potentials

Viktor M. Rozenbaum, Irina V. Shapochkina, Sheh-Yi Sheu, Dah-Yen Yang, and Sheng Hsien Lin

Phys. Rev. E 94, 052140 (2016) - Published 23 November, 2016

Finite-size corrections and scaling for the dimer model on the checkerboard lattice

Nickolay Sh. Izmailian, Ming-Chya Wu, and Chin-Kun Hu

Phys. Rev. E 94, 052141 (2016) - Published 23 November, 2016

Inhomogeneous diffusion and ergodicity breaking induced by global memory effects

Adrián A. Budini

Phys. Rev. E 94, 052142 (2016) - Published 28 November, 2016

Metastable minima of the Heisenberg spin glass in a random magnetic field

Auditya Sharma, Joonhyun Yeo, and M. A. Moore

Phys. Rev. E 94, 052143 (2016) - Published 28 November, 2016

Noisy oscillator: Random mass and random damping

Stanislav Burov and Moshe Gitterman

Phys. Rev. E 94, 052144 (2016) - Published 28 November, 2016

Maximum caliber inference and the stochastic Ising model

Carlo Cafaro and Sean Alan Ali

Phys. Rev. E 94, 052145 (2016) - Published 28 November, 2016

Two-dimensional photon echoes reveal non-Markovian energy transfer in an excitonic dimer

Hong-Guang Duan, Moritz Frey, Michael Thorwart, and Peter Nalbach

Phys. Rev. E 94, 052146 (2016) - Published 28 November, 2016

Fractional kinetics emerging from ergodicity breaking in random media

Daniel Molina-García, Tuan Minh Pham, Paolo Paradisi, Carlo Manzo, and Gianni Pagnini

Phys. Rev. E 94, 052147 (2016) - Published 28 November, 2016

Theoretical description of effective heat transfer between two viscously coupled beads

A. Bérut, A. Imparato, A. Petrosyan, and S. Ciliberto

Phys. Rev. E 94, 052148 (2016) - Published 29 November, 2016

Effect of long-range interactions on the phase transition of Axelrod's model

Sandro M. Reia and José F. Fontanari

Phys. Rev. E 94, 052149 (2016) - Published 30 November, 2016

Mesoscopic kinetic basis of macroscopic chemical thermodynamics: A mathematical theory

Hao Ge and Hong Qian

Phys. Rev. E 94, 052150 (2016) - Published 30 November, 2016

Nonlinear Dynamics and Chaos

Information flow and causality as rigorous notions ab initio

X. San Liang

Phys. Rev. E 94, 052201 (2016) - Published 1 November, 2016

Instability in reaction-superdiffusion systems

Reza Torabi and Zahra Rezaei

Phys. Rev. E 94, 052202 (2016) - Published 1 November, 2016

Testing for causality in reconstructed state spaces by an optimized mixed prediction method

Anna Krakovská and Filip Hanzely

Phys. Rev. E 94, 052203 (2016) - Published 3 November, 2016

Spatial splay states and splay chimera states in coupled map lattices

Joydeep Singha and Neelima Gupte

Phys. Rev. E 94, 052204 (2016) - Published 3 November, 2016

Excitation and suppression of chimera states by multiplexing

Vladimir A. Maksimenko, Vladimir V. Makarov, Bidesh K. Bera, Dibakar Ghosh, Syamal Kumar Dana, Mikhail V. Goremyko, Nikita S. Frolov, Alexey A. Koronovskii, and Alexander E. Hramov

Phys. Rev. E 94, 052205 (2016) - Published 4 November, 2016

Broadband and tunable one-dimensional strongly nonlinear acoustic metamaterials: Theoretical study

Xin Fang, Jihong Wen, Jianfei Yin, Dianlong Yu, and Yong Xiao

Phys. Rev. E 94, 052206 (2016) - Published 4 November, 2016

Recovery of couplings and parameters of elements in networks of time-delay systems from time series

I. V. Sysoev, V. I. Ponomarenko, D. D. Kulminskiy, and M. D. Prokhorov

Phys. Rev. E 94, 052207 (2016) - Published 7 November, 2016

Slow passage through thresholds in quantum dot lasers

E. A. Viktorov, T. Erneux, E. D. Kolykhalova, V. V. Dudelev, J. Danckaert, K. K. Soboleva, A. G. Deryagin, I. I. Novikov, M. V. Maximov, A. E. Zhukov, V. M. Ustinov, V. I. Kuchinskii, W. Sibbett, E. U. Rafailov, and G. S. Sokolovskii

Phys. Rev. E 94, 052208 (2016) - Published 9 November, 2016

Field measurement analysis to validate lane-changing behavior in a cellular automaton model

Eriko Fukuda, Jun Tanimoto, Yoshiro Iwamura, Kosuke Nakamura, and Mitsuhiro Akimoto

Phys. Rev. E 94, 052209 (2016) - Published 9 November, 2016

Incomplete phase-space method to reveal time delay from scalar time series

Shengli Zhu and Lu Gan

Phys. Rev. E 94, 052210 (2016) - Published 9 November, 2016

Equivalence of coupled networks and networks with multimodal frequency distributions: Conditions for the bimodal and trimodal case

Bastian Pietras, Nicolás Deschle, and Andreas Daffertshofer

Phys. Rev. E 94, 052211 (2016) - Published 9 November, 2016

Spatial instabilities in a cloud of cold atoms

Rudy Romain, Antoine Jallageas, Philippe Verkerk, and Daniel Hennequin

Phys. Rev. E 94, 052212 (2016) - Published 11 November, 2016

Isostable reduction of periodic orbits

Dan Wilson and Jeff Moehlis

Phys. Rev. E 94, 052213 (2016) - Published 14 November, 2016

Stochastic resonance subject to multiplicative and additive noise: The influence of potential asymmetries

Zijian Qiao, Yaguo Lei, Jing Lin, and Shantao Niu

Phys. Rev. E 94, 052214 (2016) - Published 15 November, 2016

Quantum signatures of charge flipping vortices in the Bose-Hubbard trimer

Peter Jason and Magnus Johansson

Phys. Rev. E 94, 052215 (2016) - Published 15 November, 2016

Generalized synchrony of coupled stochastic processes with multiplicative noise

Haider Hasan Jafri, R. K. Brojen Singh, and Ramakrishna Ramaswamy

Phys. Rev. E 94, 052216 (2016) - Published 18 November, 2016

Flaming 2π kinks in parametrically driven systems

E. Berrios-Caro, M. G. Clerc, and A. O. Leon

Phys. Rev. E 94, 052217 (2016) - Published 23 November, 2016

Statistics of the stochastically forced Lorenz attractor by the Fokker-Planck equation and cumulant expansions

Altan Allawala and J. B. Marston

Phys. Rev. E 94, 052218 (2016) - Published 23 November, 2016

Synchronization of coupled noisy oscillators: Coarse graining from continuous to discrete phases

Daniel Escaff, Alexandre Rosas, Raúl Toral, and Katja Lindenberg

Phys. Rev. E 94, 052219 (2016) - Published 28 November, 2016

Optical wall dynamics induced by coexistence of monostable and bistable spatial regions

V. Odent, E. Louvergneaux, M. G. Clerc, and I. Andrade-Silva

Phys. Rev. E 94, 052220 (2016) - Published 28 November, 2016

Energetics of synchronization in coupled oscillators rotating on circular trajectories

Yuki Izumida, Hiroshi Kori, and Udo Seifert

Phys. Rev. E 94, 052221 (2016) - Published 29 November, 2016

Anomalous dynamics and the choice of Poincaré recurrence set

Matteo Sala, Roberto Artuso, and Cesar Manchein

Phys. Rev. E 94, 052222 (2016) - Published 30 November, 2016

Memory states in small arrays of Josephson junctions

Y. Braiman, B. Neschke, N. Nair, N. Imam, and R. Glowinski

Phys. Rev. E 94, 052223 (2016) - Published 30 November, 2016

Networks and Complex Systems

Phase transition of social learning collectives and the echo chamber

Shintaro Mori, Kazuaki Nakayama, and Masato Hisakado

Phys. Rev. E 94, 052301 (2016) - Published 2 November, 2016

Probability distribution of intersymbol distances in random symbolic sequences: Applications to improving detection of keywords in texts and of amino acid clustering in proteins

Pedro Carpena, Pedro A. Bernaola-Galván, Concepción Carretero-Campos, and Ana V. Coronado

Phys. Rev. E 94, 052302 (2016) - Published 4 November, 2016

Roles of mixing patterns in the network reconstruction

Qiang Guo, Guang Liang, Jia-Qi Fu, Jing-Ti Han, and Jian-Guo Liu

Phys. Rev. E 94, 052303 (2016) - Published 4 November, 2016

Inducing self-organized criticality in a network toy model by neighborhood assortativity

Alfonso Allen-Perkins, Javier Galeano, and Juan Manuel Pastor

Phys. Rev. E 94, 052304 (2016) - Published 7 November, 2016

Random holographic “large worlds” with emergent dimensions

Carlo A. Trugenberger

Phys. Rev. E 94, 052305 (2016) - Published 8 November, 2016

Interdependent lattice networks in high dimensions

Steven Lowinger, Gabriel A. Cwilich, and Sergey V. Buldyrev

Phys. Rev. E 94, 052306 (2016) - Published 8 November, 2016

Replica analysis for the duality of the portfolio optimization problem

Takashi Shinzato

Phys. Rev. E 94, 052307 (2016) - Published 9 November, 2016

Finite-size scaling analysis of a nonequilibrium phase transition in the naming game model

E. Brigatti and A. Hernández

Phys. Rev. E 94, 052308 (2016) - Published 10 November, 2016

Sequential motif profile of natural visibility graphs

Jacopo Iacovacci and Lucas Lacasa

Phys. Rev. E 94, 052309 (2016) - Published 14 November, 2016

Robustness of controlling edge dynamics in complex networks against node failure

Shao-Peng Pang, Fei Hao, and Wen-Xu Wang

Phys. Rev. E 94, 052310 (2016) - Published 14 November, 2016

Spectral properties of the hierarchical product of graphs

Per Sebastian Skardal and Kirsti Wash

Phys. Rev. E 94, 052311 (2016) - Published 15 November, 2016

Bias, belief, and consensus: Collective opinion formation on fluctuating networks

Vudtiwat Ngampruetikorn and Greg J. Stephens

Phys. Rev. E 94, 052312 (2016) - Published 18 November, 2016

Robustness of persistent spiking to partial synchronization in a minimal model of synaptically driven self-sustained activity

Nikita Novikov and Boris Gutkin

Phys. Rev. E 94, 052313 (2016) - Published 21 November, 2016

Anisotropic invasion and its consequences in two-strategy evolutionary games on a square lattice

György Szabó, Levente Varga, and Mátyás Szabó

Phys. Rev. E 94, 052314 (2016) - Published 22 November, 2016

Equivalence between modularity optimization and maximum likelihood methods for community detection

M. E. J. Newman

Phys. Rev. E 94, 052315 (2016) - Published 22 November, 2016

This paper examines two common methods of community detection in networks, namely modularity maximization and the maximum likelihood method. The author shows an equivalence between these two methods, and explores some of its consequences.

Epidemic spreading in random rectangular networks

Ernesto Estrada, Sandro Meloni, Matthew Sheerin, and Yamir Moreno

Phys. Rev. E 94, 052316 (2016) - Published 28 November, 2016

Characterization of multiple topological scales in multiplex networks through supra-Laplacian eigengaps

Emanuele Cozzo and Yamir Moreno

Phys. Rev. E 94, 052318 (2016) - Published 29 November, 2016

What Big Data tells: Sampling the social network by communication channels

János Török, Yohsuke Murase, Hang-Hyun Jo, János Kertész, and Kimmo Kaski

Phys. Rev. E 94, 052319 (2016) - Published 29 November, 2016

Biological Physics

Filter-feeding, near-field flows, and the morphologies of colonial choanoflagellates

Julius B. Kirkegaard and Raymond E. Goldstein

Phys. Rev. E 94, 052401 (2016) - Published 1 November, 2016

Statistical mechanics of consciousness: Maximization of information content of network is associated with conscious awareness

R. Guevara Erra, D. M. Mateos, R. Wennberg, and J. L. Perez Velazquez

Phys. Rev. E 94, 052402 (2016) - Published 8 November, 2016

Sensitivity of small myosin II ensembles from different isoforms to mechanical load and ATP concentration

Thorsten Erdmann, Kathrin Bartelheimer, and Ulrich S. Schwarz

Phys. Rev. E 94, 052403 (2016) - Published 9 November, 2016

Splitting nodes and linking channels: A method for assembling biocircuits from stochastic elementary units

Cameron Ferwerda and Ovidiu Lipan

Phys. Rev. E 94, 052404 (2016) - Published 10 November, 2016

Locking induced by distance-dependent delay in neuronal networks

Jinjie Zhu and Xianbin Liu

Phys. Rev. E 94, 052405 (2016) - Published 14 November, 2016

Properties of low-dimensional collective variables in the molecular dynamics of biopolymers

Roberto Meloni, Carlo Camilloni, and Guido Tiana

Phys. Rev. E 94, 052406 (2016) - Published 14 November, 2016

Relaxation of a simulated lipid bilayer vesicle compressed by an atomic force microscope

Ben M. Barlow, Martine Bertrand, and Béla Joós

Phys. Rev. E 94, 052408 (2016) - Published 15 November, 2016

Network model of human aging: Frailty limits and information measures

Spencer G. Farrell, Arnold B. Mitnitski, Kenneth Rockwood, and Andrew D. Rutenberg

Phys. Rev. E 94, 052409 (2016) - Published 18 November, 2016

Optimal counter-current exchange networks

Robert S. Farr and Yong Mao

Phys. Rev. E 94, 052410 (2016) - Published 18 November, 2016

Random matrix theory for analyzing the brain functional network in attention deficit hyperactivity disorder

Rong Wang, Li Wang, Yong Yang, Jiajia Li, Ying Wu, and Pan Lin

Phys. Rev. E 94, 052411 (2016) - Published 23 November, 2016

Systems-level approach to uncovering diffusive states and their transitions from single-particle trajectories

Peter K. Koo and Simon G. J. Mochrie

Phys. Rev. E 94, 052412 (2016) - Published 28 November, 2016

Impact of time delays on oscillatory dynamics of interlinked positive and negative feedback loops

Bo Huang, Xinyu Tian, Feng Liu, and Wei Wang

Phys. Rev. E 94, 052413 (2016) - Published 28 November, 2016

Suppressing membrane height fluctuations leads to a membrane-mediated interaction among proteins

Kayla Sapp and Lutz Maibaum

Phys. Rev. E 94, 052414 (2016) - Published 29 November, 2016

Polymers

Extended Vicsek fractals: Laplacian spectra and their applications

Maxim Dolgushev, Hongxiao Liu, and Zhongzhi Zhang

Phys. Rev. E 94, 052501 (2016) - Published 2 November, 2016

Effect of chain stiffness and temperature on the dynamics and microstructure of crystallizable bead-spring polymer melts

Hong T. Nguyen and Robert S. Hoy

Phys. Rev. E 94, 052502 (2016) - Published 2 November, 2016

Thickness-dependent glass transition temperature and charge mobility in cross-linked polyfluorene thin films

Dan Liu, Hui Qin, Jinghui Zhang, and Tao Wang

Phys. Rev. E 94, 052503 (2016) - Published 4 November, 2016

Cooperativity at the glass transition: A perspective from facilitation on the analysis of relaxation in modulated calorimetry

Elpidio Tombari and Marco Pieruccini

Phys. Rev. E 94, 052504 (2016) - Published 28 November, 2016

Colloids, Complex Fluids, and Active Matter

Phase behavior of a binary fluid mixture of quadrupolar molecules

Masatoshi Toda, Shinji Kajimoto, Shuichi Toyouchi, Toshihiro Kawakatsu, Yohji Akama, Motoko Kotani, and Hiroshi Fukumura

Phys. Rev. E 94, 052601 (2016) - Published 2 November, 2016

Critical phenomena in active matter

M. Paoluzzi, C. Maggi, U. Marini Bettolo Marconi, and N. Gnan

Phys. Rev. E 94, 052602 (2016) - Published 3 November, 2016

Lane formation in a driven attractive fluid

C. W. Wächtler, F. Kogler, and S. H. L. Klapp

Phys. Rev. E 94, 052603 (2016) - Published 7 November, 2016

Enhanced diffusion in finite-size simulations of a fragile diatomic glass former

Sonia Taamalli, Julia Hinds, Samuel Migirditch, and Victor Teboul

Phys. Rev. E 94, 052604 (2016) - Published 14 November, 2016

Assembly of the most topologically regular two-dimensional micro and nanocrystals with spherical, conical, and tubular shapes

D. S. Roshal, O. V. Konevtsova, A. E. Myasnikova, and S. B. Rochal

Phys. Rev. E 94, 052605 (2016) - Published 16 November, 2016

Symmetry breaking in clogging for oppositely driven particles

Tobias Glanz, Raphael Wittkowski, and Hartmut Löwen

Phys. Rev. E 94, 052606 (2016) - Published 17 November, 2016

Significant difference in the dynamics between strong and fragile glass formers

Akira Furukawa and Hajime Tanaka

Phys. Rev. E 94, 052607 (2016) - Published 17 November, 2016

Athermal rheology of weakly attractive soft particles

Ehsan Irani, Pinaki Chaudhuri, and Claus Heussinger

Phys. Rev. E 94, 052608 (2016) - Published 28 November, 2016

Liquid Crystals

Hydrodynamic interactions in freely suspended liquid crystal films

Tatiana Kuriabova, Thomas R. Powers, Zhiyuan Qi, Aaron Goldfain, Cheol Soo Park, Matthew A. Glaser, Joseph E. Maclennan, and Noel A. Clark

Phys. Rev. E 94, 052701 (2016) - Published 3 November, 2016

Inverse stochastic resonance in electroconvection by multiplicative colored noise

Jong-Hoon Huh

Phys. Rev. E 94, 052702 (2016) - Published 8 November, 2016

Dynamics of disk pairs in a nematic liquid crystal

Alena Antipova and Colin Denniston

Phys. Rev. E 94, 052704 (2016) - Published 29 November, 2016

Films and Interfaces

Effects of thin film and Stokes drift on the generation of vorticity by surface waves

V. M. Parfenyev, S. S. Vergeles, and V. V. Lebedev

Phys. Rev. E 94, 052801 (2016) - Published 4 November, 2016

Noise-driven interfaces and their macroscopic representation

Marco Dentz, Insa Neuweiler, Yves Méheust, and Daniel M. Tartakovsky

Phys. Rev. E 94, 052802 (2016) - Published 7 November, 2016

Thermal fluctuations of an interface near a contact line

D. Belardinelli, M. Sbragaglia, M. Gross, and B. Andreotti

Phys. Rev. E 94, 052803 (2016) - Published 8 November, 2016

Solidification of supercooled water in the vicinity of a solid wall

Markus Schremb and Cameron Tropea

Phys. Rev. E 94, 052804 (2016) - Published 9 November, 2016

Granular Materials

Characterization of base roughness for granular chute flows

L. Jing, C. Y. Kwok, Y. F. Leung, and Y. D. Sobral

Phys. Rev. E 94, 052901 (2016) - Published 1 November, 2016

Penetration in bimodal, polydisperse granular material

N. Kouraytem, S. T. Thoroddsen, and J. O. Marston

Phys. Rev. E 94, 052902 (2016) - Published 7 November, 2016

Formation of localized sand patterns downstream from a vertical cylinder under steady flows: Experimental and theoretical study

Anthony Auzerais, Armelle Jarno, Alexander Ezersky, and François Marin

Phys. Rev. E 94, 052903 (2016) - Published 7 November, 2016

Erosion and deposition in depth-averaged models of dense, dry, inclined, granular flows

James T. Jenkins and Diego Berzi

Phys. Rev. E 94, 052904 (2016) - Published 8 November, 2016

Localized fluidization in granular materials: Theoretical and numerical study

E. P. Montellà, M. Toraldo, B. Chareyre, and L. Sibille

Phys. Rev. E 94, 052905 (2016) - Published 10 November, 2016

Shock wave in a one-dimensional granular chain under Hertz contact

Wen-Shan Duan, Zhen-Bin Zhang, and Lei Yang

Phys. Rev. E 94, 052906 (2016) - Published 16 November, 2016

Wave propagation in one-dimensional microscopic granular chains

Wei-Hsun Lin and Chiara Daraio

Phys. Rev. E 94, 052907 (2016) - Published 28 November, 2016

Solid Mechanics

Markov state modeling of sliding friction

F. Pellegrini, François P. Landes, A. Laio, S. Prestipino, and E. Tosatti

Phys. Rev. E 94, 053001 (2016) - Published 2 November, 2016

Effect of stress nonhomogeneity on the shear melting of a thin boundary lubrication layer

Iakov A. Lyashenko, Alexander E. Filippov, Mikhail Popov, and Valentin L. Popov

Phys. Rev. E 94, 053002 (2016) - Published 10 November, 2016

Fragmentation and shear band formation by slow compression of brittle porous media

Gergő Pál, Zoltán Jánosi, Ferenc Kun, and Ian G. Main

Phys. Rev. E 94, 053003 (2016) - Published 16 November, 2016

The authors report a numerical study of fragmentation of disordered granular porous media. They use discrete-element simulation to study fragmentation in a shear band that occurs when a cylindrical sample is slowly compressed. Their results for the position, orientation, and width of the central shear band and the spatial and mass distributions of the fragments generally agree with experimental and field observations.

Formation of high-order acoustic Bessel beams by spiral diffraction gratings

Noé Jiménez, R. Picó, V. Sánchez-Morcillo, V. Romero-García, L. M. García-Raffi, and K. Staliunas

Phys. Rev. E 94, 053004 (2016) - Published 23 November, 2016

Radiative transfer of acoustic waves in continuous complex media: Beyond the Helmholtz equation

Ibrahim Baydoun, Diego Baresch, Romain Pierrat, and Arnaud Derode

Phys. Rev. E 94, 053005 (2016) - Published 28 November, 2016

Fluid Dynamics

Dynamic multiscaling in magnetohydrodynamic turbulence

Samriddhi Sankar Ray, Ganapati Sahoo, and Rahul Pandit

Phys. Rev. E 94, 053101 (2016) - Published 2 November, 2016

Interplay of Darrieus-Landau instability and weak turbulence in premixed flame propagation

Francesco Creta, Rachele Lamioni, Pasquale Eduardo Lapenna, and Guido Troiani

Phys. Rev. E 94, 053102 (2016) - Published 3 November, 2016

Viscoacoustic model for near-field ultrasonic levitation

Ivan Melikhov, Sergey Chivilikhin, Alexey Amosov, and Romain Jeanson

Phys. Rev. E 94, 053103 (2016) - Published 4 November, 2016

Hydrodynamic interaction of swimming organisms in an inertial regime

Gaojin Li, Anca Ostace, and Arezoo M. Ardekani

Phys. Rev. E 94, 053104 (2016) - Published 4 November, 2016

Rotationally induced fingering patterns in a two-dimensional heterogeneous porous medium

Ching-Yao Chen, Ting-Shiang Lin, and José A. Miranda

Phys. Rev. E 94, 053105 (2016) - Published 4 November, 2016

Dynamics of large-scale quantities in Rayleigh-Bénard convection

Ambrish Pandey, Abhishek Kumar, Anando G. Chatterjee, and Mahendra K. Verma

Phys. Rev. E 94, 053106 (2016) - Published 7 November, 2016

Magnetic resonance imaging measurements evidence weak dispersion in homogeneous porous media

A. P. Lehoux, S. Rodts, P. Faure, E. Michel, D. Courtier-Murias, and P. Coussot

Phys. Rev. E 94, 053107 (2016) - Published 8 November, 2016

Unsteady turbulence cascades

Susumu Goto and J. C. Vassilicos

Phys. Rev. E 94, 053108 (2016) - Published 9 November, 2016

Fast algorithm for a three-dimensional synthetic model of intermittent turbulence

Francesco Malara, Francesca Di Mare, Giuseppina Nigro, and Luca Sorriso-Valvo

Phys. Rev. E 94, 053109 (2016) - Published 10 November, 2016

Sound propagation through a rarefied gas in rectangular channels

Lei Wu (吴雷)

Phys. Rev. E 94, 053110 (2016) - Published 11 November, 2016

Hydraulic droplet coarsening in open-channel capillaries

Patrick B. Warren

Phys. Rev. E 94, 053111 (2016) - Published 14 November, 2016

Two-frequency forcing of droplet rebounds on a liquid bath

Naresh Sampara and Tristan Gilet

Phys. Rev. E 94, 053112 (2016) - Published 15 November, 2016

Helical turbulent Prandtl number in the A model of passive vector advection

M. Hnatič and P. Zalom

Phys. Rev. E 94, 053113 (2016) - Published 16 November, 2016

Numerical investigation of initial condition effects on Rayleigh-Taylor instability with acceleration reversals

Denis Aslangil, Arindam Banerjee, and Andrew G. W. Lawrie

Phys. Rev. E 94, 053114 (2016) - Published 18 November, 2016

Experimental evidence of nonlinear mode coupling between spherical and nonspherical oscillations of microbubbles

Matthieu Guédra, Claude Inserra, Cyril Mauger, and Bruno Gilles

Phys. Rev. E 94, 053115 (2016) - Published 18 November, 2016

Irreversibility of the two-dimensional enstrophy cascade

E. Piretto, S. Musacchio, F. De Lillo, and G. Boffetta

Phys. Rev. E 94, 053116 (2016) - Published 22 November, 2016

Drag reductions and the air-water interface stability of superhydrophobic surfaces in rectangular channel flow

Jingxian Zhang, Zhaohui Yao, and Pengfei Hao

Phys. Rev. E 94, 053117 (2016) - Published 22 November, 2016

Recirculation zones induce non-Fickian transport in three-dimensional periodic porous media

Eleonora Crevacore, Tiziana Tosco, Rajandrea Sethi, Gianluca Boccardo, and Daniele L. Marchisio

Phys. Rev. E 94, 053118 (2016) - Published 23 November, 2016

How long do particles spend in vortical regions in turbulent flows?

Akshay Bhatnagar, Anupam Gupta, Dhrubaditya Mitra, Rahul Pandit, and Prasad Perlekar

Phys. Rev. E 94, 053119 (2016) - Published 23 November, 2016

Log law of the wall revisited in Taylor-Couette flows at intermediate Reynolds numbers

Harminder Singh, Claudio Alberto Torres Suazo, and Alain Liné

Phys. Rev. E 94, 053120 (2016) - Published 28 November, 2016

One-dimensional model and solutions for creeping gas flows in the approximation of uniform pressure

A. Vedernikov and D. Balapanov

Phys. Rev. E 94, 053121 (2016) - Published 29 November, 2016

Monosized dripping mode of axisymmetric flow focusing

Francisco Cruz-Mazo, J. M. Montanero, and A. M. Gañán-Calvo

Phys. Rev. E 94, 053122 (2016) - Published 29 November, 2016

Plasma Physics

Electron heating in subpicosecond laser interaction with overdense and near-critical plasmas

L. Cialfi, L. Fedeli, and M. Passoni

Phys. Rev. E 94, 053201 (2016) - Published 4 November, 2016

Multispecies plasma expansion into vacuum: The role of secondary ions and suprathermal electrons

I. S. Elkamash and I. Kourakis

Phys. Rev. E 94, 053202 (2016) - Published 7 November, 2016

Influence of Xe and Kr impurities on x-ray yield from debris-free plasma x-ray sources with an Ar supersonic gas jet irradiated by femtosecond near-infrared-wavelength laser pulses

V. L. Kantsyrev, K. A. Schultz, V. V. Shlyaptseva, G. M. Petrov, A. S. Safronova, E. E. Petkov, J. J. Moschella, I. Shrestha, W. Cline, P. Wiewior, and O. Chalyy

Phys. Rev. E 94, 053203 (2016) - Published 7 November, 2016

Vlasov simulations of thermal plasma waves with relativistic phase velocity in a Lorentz boosted frame

A. G. R. Thomas

Phys. Rev. E 94, 053204 (2016) - Published 9 November, 2016

Compressing turbulence and sudden viscous dissipation with compression-dependent ionization state

Seth Davidovits and Nathaniel J. Fisch

Phys. Rev. E 94, 053206 (2016) - Published 14 November, 2016

Laser propagation in dense magnetized plasma

S. X. Luan, W. Yu, F. Y. Li, Dong Wu, Z. M. Sheng, M. Y. Yu, and J. Zhang

Phys. Rev. E 94, 053207 (2016) - Published 14 November, 2016

Finite-temperature quantum effects on confined charges

Jeffrey Wrighton, James Dufty, and Sandipan Dutta

Phys. Rev. E 94, 053208 (2016) - Published 21 November, 2016

Large-scale dynamics of magnetic helicity

Moritz Linkmann and Vassilios Dallas

Phys. Rev. E 94, 053209 (2016) - Published 23 November, 2016

Summation of the spectra of all partially resolved transition arrays in a supertransition array

Y. Kurzweil and G. Hazak

Phys. Rev. E 94, 053210 (2016) - Published 28 November, 2016

Pair potentials for warm dense matter and their application to x-ray Thomson scattering in aluminum and beryllium

L. Harbour, M. W. C. Dharma-wardana, D. D. Klug, and L. J. Lewis

Phys. Rev. E 94, 053211 (2016) - Published 29 November, 2016

Computational Physics

Gray free-energy multiphase lattice Boltzmann model with effective transport and wetting properties

Mohamad Zalzale, M. Ramaioli, K. L. Scrivener, and P. J. McDonald

Phys. Rev. E 94, 053301 (2016) - Published 1 November, 2016

Self-adjoint integral operator for bounded nonlocal transport

J. E. Maggs and G. J. Morales

Phys. Rev. E 94, 053302 (2016) - Published 4 November, 2016

Nonuniqueness of local stress of three-body potentials in molecular simulations

Koh M. Nakagawa and Hiroshi Noguchi

Phys. Rev. E 94, 053304 (2016) - Published 14 November, 2016

Elimination of numerical Cherenkov instability in flowing-plasma particle-in-cell simulations by using Galilean coordinates

Remi Lehe, Manuel Kirchen, Brendan B. Godfrey, Andreas R. Maier, and Jean-Luc Vay

Phys. Rev. E 94, 053305 (2016) - Published 14 November, 2016

Operator calculus for information field theory

Reimar H. Leike and Torsten A. Enßlin

Phys. Rev. E 94, 053306 (2016) - Published 16 November, 2016

Boundary scheme for linear heterogeneous surface reactions in the lattice Boltzmann method

Xuhui Meng and Zhaoli Guo

Phys. Rev. E 94, 053307 (2016) - Published 18 November, 2016

Spectral functions with the density matrix renormalization group: Krylov-space approach for correction vectors

A. Nocera and G. Alvarez

Phys. Rev. E 94, 053308 (2016) - Published 21 November, 2016

Local momentum and heat fluxes in transient transport processes and inhomogeneous systems

Youping Chen and Adrian Diaz

Phys. Rev. E 94, 053309 (2016) - Published 21 November, 2016

Efficient time-sampling method in Coulomb-corrected strong-field approximation

Xiang-Ru Xiao, Mu-Xue Wang, Wei-Hao Xiong, and Liang-You Peng

Phys. Rev. E 94, 053310 (2016) - Published 23 November, 2016

Grid refinement for entropic lattice Boltzmann models

B. Dorschner, N. Frapolli, S. S. Chikatamarla, and I. V. Karlin

Phys. Rev. E 94, 053311 (2016) - Published 28 November, 2016

Hybrid Monte Carlo and continuum modeling of electrolytes with concentration-induced dielectric variations

Xiaofei Guan, Manman Ma, Zecheng Gan, Zhenli Xu, and Bo Li

Phys. Rev. E 94, 053312 (2016) - Published 28 November, 2016

Cascaded lattice Boltzmann method with improved forcing scheme for large-density-ratio multiphase flow at high Reynolds and Weber numbers

Daniel Lycett-Brown and Kai H. Luo

Phys. Rev. E 94, 053313 (2016) - Published 30 November, 2016

COMMENTS

Comment on “Locomotion of a microorganism in weakly viscoelastic liquids”

Ivan C. Christov and P. M. Jordan

Phys. Rev. E 94, 057101 (2016) - Published 8 November, 2016

Reply to “Comment on ‘Locomotion of a microorganism in weakly viscoelastic liquids’ ”

M. De Corato, F. Greco, and P. L. Maffettone

Phys. Rev. E 94, 057102 (2016) - Published 8 November, 2016

ERRATA

Erratum: Frequency effects on the scale and behavior of acoustic streaming [Phys. Rev. E 89, 013203 (2014)]

Michael B. Dentry, Leslie Y. Yeo, and James R. Friend

Phys. Rev. E 94, 059901 (2016) - Published 1 November, 2016

Publisher's Note: Imaging grain boundary grooves in hard-sphere colloidal bicrystals [Phys. Rev. E 94, 042604 (2016)]

Eric Maire, Emily Redston, Maria Persson Gulda, David A. Weitz, and Frans Spaepen

Phys. Rev. E 94, 059902 (2016) - Published 2 November, 2016

Erratum: Microstructure identification via detrended fluctuation analysis of ultrasound signals [Phys. Rev. E 87, 043304 (2013)]

Paulo G. Normando, Romão S. Nascimento, Elineudo P. Moura, and André P. Vieira

Phys. Rev. E 94, 059903 (2016) - Published 3 November, 2016

Publisher's Note: Generalized Gaussian wave packet dynamics: Integrable and chaotic systems [Phys. Rev. E 93, 012213 (2016)]

Harinder Pal, Manan Vyas, and Steven Tomsovic

Phys. Rev. E 94, 059904 (2016) - Published 7 November, 2016

Erratum: Spatiotemporal bounded noises and transitions induced by them in solutions of the real Ginzburg-Landau model [Phys. Rev. E 86, 021118 (2012)]

Sebastiano de Franciscis and Alberto d'Onofrio

Phys. Rev. E 94, 059905 (2016) - Published 10 November, 2016

Publisher's Note: Breathers and rogue waves excited by all-magnonic spin-transfer torque [Phys. Rev. E 94, 042220 (2016)]

Zai-Dong Li, Qiu-Yan Li, Tian-Fu Xu, and Peng-Bin He

Phys. Rev. E 94, 059906 (2016) - Published 11 November, 2016

Publisher's Note: Critical wind speed at which trees break [Phys. Rev. E 93, 023001 (2016)]

E. Virot, A. Ponomarenko, É. Dehandschoewercker, D. Quéré, and C. Clanet

Phys. Rev. E 94, 059907 (2016) - Published 30 November, 2016

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