HIGHLIGHTED ARTICLES

Overdamped stochastic thermodynamics with multiple reservoirs

Yûto Murashita and Massimiliano Esposito

Phys. Rev. E 94, 062148 (2016) - Published 29 December, 2016

This paper proposes a theory of overdamped stochastic thermodynamics in the presence of multiple reservoirs with different temperatures. After showing that naively extending the case with a single reservoir fails to give correct results, the authors construct a nontrivial overdamped approximation by starting from an underdamped description. They then show that the theory gives correct results in the case of a Brownian heat engine.

Densification and structural transitions in networks that grow by node copying

U. Bhat, P. L. Krapivsky, R. Lambiotte, and S. Redner

Phys. Rev. E 94, 062302 (2016) - Published 8 December, 2016

The authors introduce a simple growing network model that allows them to give extensive analytical results for its properties. The model grows by a copying mechanism in which a new node attaches to a randomly selected target node and also, with copying probability p, to each of the neighbors of the target. A key finding is that a transition from a sparse to a dense regime occurs as the copying probability increases beyond 1/2.

Structure of curved crystals in the thermodynamic limit and the perfect screening condition

Alex Travesset

Phys. Rev. E 94, 063001 (2016) - Published 13 December, 2016

This paper examines the distribution of defects in curved two-dimensional crystals in the limit of an arbitrarily large number of particles. The author focuses on closed manifolds and presents results for spheres and tori, for which experimental and numerical results are available. The case of more general geometries is also discussed.

RAPID COMMUNICATIONS

Statistical Physics

Weak universality in sensory tradeoffs

Sarah Marzen and Simon DeDeo

Phys. Rev. E 94, 060101(R) (2016) - Published 7 December, 2016

Exact probability distribution functions for Parrondo's games

Rubina Zadourian, David B. Saakian, and Andreas Klümper

Phys. Rev. E 94, 060102(R) (2016) - Published 12 December, 2016

Stochastic Laplacian growth

Oleg Alekseev and Mark Mineev-Weinstein

Phys. Rev. E 94, 060103(R) (2016) - Published 19 December, 2016

Nonlinear Dynamics and Chaos

Oscillation structure of localized perturbations in modulationally unstable media

Gino Biondini, Sitai Li, and Dionyssios Mantzavinos

Phys. Rev. E 94, 060201(R) (2016) - Published 23 December, 2016

Networks and Complex Systems

Percolation in real multiplex networks

Ginestra Bianconi and Filippo Radicchi

Phys. Rev. E 94, 060301(R) (2016) - Published 16 December, 2016

Biological Physics

Fronts under arrest: Nonlocal boundary dynamics in biology

Scott G. McCalla and James H. von Brecht

Phys. Rev. E 94, 060401(R) (2016) - Published 29 December, 2016

Colloids, Complex Fluids, and Active Matter

Velocity autocorrelation function in supercooled liquids: Long-time tails and anomalous shear-wave propagation

H. L. Peng, H. R. Schober, and Th. Voigtmann

Phys. Rev. E 94, 060601(R) (2016) - Published 15 December, 2016

Probing the shear viscosity of an active nematic film

Pau Guillamat, Jordi Ignés-Mullol, Suraj Shankar, M. Cristina Marchetti, and Francesc Sagués

Phys. Rev. E 94, 060602(R) (2016) - Published 28 December, 2016

Correlation between temperature variations of static and dynamic properties in glass-forming liquids

D. N. Voylov, P. J. Griffin, B. Mercado, J. K. Keum, M. Nakanishi, V. N. Novikov, and A. P. Sokolov

Phys. Rev. E 94, 060603(R) (2016) - Published 29 December, 2016

Liquid Crystals

X-ray and Raman scattering study of orientational order in nematic and heliconical nematic liquid crystals

Gautam Singh, Jinxin Fu, Dena M. Agra-Kooijman, Jang-Kun Song, M. R. Vengatesan, Mohan Srinivasarao, Michael R. Fisch, and Satyendra Kumar

Phys. Rev. E 94, 060701(R) (2016) - Published 13 December, 2016

Fluid Dynamics

Statistical theory of reversals in two-dimensional confined turbulent flows

Vishwanath Shukla, Stephan Fauve, and Marc Brachet

Phys. Rev. E 94, 061101(R) (2016) - Published 1 December, 2016

Coupled continuous-time random walks for fluid stretching in two-dimensional heterogeneous media

Marco Dentz, Daniel R. Lester, Tanguy Le Borgne, and Felipe P. J. de Barros

Phys. Rev. E 94, 061102(R) (2016) - Published 27 December, 2016

Plasma Physics

Experimental observation of phase-flip transitions in two inductively coupled glow discharge plasmas

Neeraj Chaubey, S. Mukherjee, A. Sen, and A. N. Sekar Iyengar

Phys. Rev. E 94, 061201(R) (2016) - Published 8 December, 2016

Bayesian inference of x-ray diffraction spectra from warm dense matter with the one-component-plasma model

Jean Clérouin, Nicolas Desbiens, Vincent Dubois, and Philippe Arnault

Phys. Rev. E 94, 061202(R) (2016) - Published 27 December, 2016

ARTICLES

Statistical Physics

Time-dependent cavitation in a viscous fluid

Vitaly A. Shneidman

Phys. Rev. E 94, 062101 (2016) - Published 1 December, 2016

Response to a periodic stimulus in a perfect integrate-and-fire neuron model driven by colored noise

Romi Mankin and Astrid Rekker

Phys. Rev. E 94, 062103 (2016) - Published 1 December, 2016

Thermalization of oscillator chains with onsite anharmonicity and comparison with kinetic theory

Christian B. Mendl, Jianfeng Lu, and Jani Lukkarinen

Phys. Rev. E 94, 062104 (2016) - Published 2 December, 2016

Curl forces and the nonlinear Fokker-Planck equation

R. S. Wedemann, A. R. Plastino, and C. Tsallis

Phys. Rev. E 94, 062105 (2016) - Published 2 December, 2016

Stability of quantum statistical ensembles with respect to local measurements

Walter Hahn and Boris V. Fine

Phys. Rev. E 94, 062106 (2016) - Published 5 December, 2016

Minimum relative entropy distributions with a large mean are Gaussian

Matteo Smerlak

Phys. Rev. E 94, 062107 (2016) - Published 5 December, 2016

Why patchy diffusion-limited aggregation belongs to the directed-percolation universality class

Moses J. Kartha and Arun G. Banpurkar

Phys. Rev. E 94, 062108 (2016) - Published 5 December, 2016

Speed and efficiency limits of multilevel incoherent heat engines

V. Mukherjee, W. Niedenzu, A. G. Kofman, and G. Kurizki

Phys. Rev. E 94, 062109 (2016) - Published 6 December, 2016

Experimental study of energy exchanges between two coupled granular gases

J.-Y. Chastaing, J.-C. Géminard, and A. Naert

Phys. Rev. E 94, 062110 (2016) - Published 7 December, 2016

Extracting work from a single reservoir in the non-Markovian underdamped regime

Oscar Paredes-Altuve, Ernesto Medina, and Pedro J. Colmenares

Phys. Rev. E 94, 062111 (2016) - Published 7 December, 2016

Work fluctuation and total entropy production in nonequilibrium processes

Ken Funo, Tomohiro Shitara, and Masahito Ueda

Phys. Rev. E 94, 062112 (2016) - Published 8 December, 2016

Ensemble-free configurational temperature for spin systems

G. Palma, G. Gutiérrez, and S. Davis

Phys. Rev. E 94, 062113 (2016) - Published 9 December, 2016

Shift in membrane miscibility transition temperature upon addition of short-chain alcohols

M. Schick

Phys. Rev. E 94, 062114 (2016) - Published 12 December, 2016

Quantum statistics of classical particles derived from the condition of a free diffusion coefficient

M. Hoyuelos and P. Sisterna

Phys. Rev. E 94, 062115 (2016) - Published 12 December, 2016

Entropy production and thermalization in the one-atom maser

E. Solano-Carrillo

Phys. Rev. E 94, 062116 (2016) - Published 12 December, 2016

Nonlinear inhomogeneous Fokker-Planck equations: Entropy and free-energy time evolution

Gabriele Sicuro, Peter Rapčan, and Constantino Tsallis

Phys. Rev. E 94, 062117 (2016) - Published 13 December, 2016

Perturbative thermodynamic geometry of nonextensive ideal classical, Bose, and Fermi gases

Hosein Mohammadzadeh, Fereshteh Adli, and Sahereh Nouri

Phys. Rev. E 94, 062118 (2016) - Published 14 December, 2016

Kinetics of aggregation with choice

E. Ben-Naim and P. L. Krapivsky

Phys. Rev. E 94, 062119 (2016) - Published 14 December, 2016

Diffusion of active chiral particles

Francisco J. Sevilla

Phys. Rev. E 94, 062120 (2016) - Published 14 December, 2016

Numerical analysis of long-range spatial correlations in surface growth

Hui Xia, Gang Tang, and Yueheng Lan

Phys. Rev. E 94, 062121 (2016) - Published 14 December, 2016

Calorimetric measurement of work for a driven harmonic oscillator

Rui Sampaio, Samu Suomela, and Tapio Ala-Nissila

Phys. Rev. E 94, 062122 (2016) - Published 15 December, 2016

Numerical study of the tight-binding approach to overdamped Brownian motion on a tilted periodic potential

K. J. Challis

Phys. Rev. E 94, 062123 (2016) - Published 19 December, 2016

Second-order fluctuation theory and time autocorrelation function for currents

Roman Belousov and E. G. D. Cohen

Phys. Rev. E 94, 062124 (2016) - Published 19 December, 2016

Fragmentation properties of two-dimensional proximity graphs considering random failures and targeted attacks

C. Norrenbrock, O. Melchert, and A. K. Hartmann

Phys. Rev. E 94, 062125 (2016) - Published 19 December, 2016

Phase transitions of the random-bond Potts chain with long-range interactions

Jean-Christian Anglès d'Auriac and Ferenc Iglói

Phys. Rev. E 94, 062126 (2016) - Published 19 December, 2016

Fluctuation relation for qubit calorimetry

Antti Kupiainen, Paolo Muratore-Ginanneschi, Jukka Pekola, and Kay Schwieger

Phys. Rev. E 94, 062127 (2016) - Published 20 December, 2016

Free-energy functional of the Debye-Hückel model of simple fluids

R. Piron and T. Blenski

Phys. Rev. E 94, 062128 (2016) - Published 20 December, 2016

Equilibrium dynamical correlations in the Toda chain and other integrable models

Aritra Kundu and Abhishek Dhar

Phys. Rev. E 94, 062130 (2016) - Published 20 December, 2016

Exact distributions of cover times for N independent random walkers in one dimension

Satya N. Majumdar, Sanjib Sabhapandit, and Grégory Schehr

Phys. Rev. E 94, 062131 (2016) - Published 21 December, 2016

Characteristic functions based on a quantum jump trajectory

Fei Liu and Jingyi Xi

Phys. Rev. E 94, 062133 (2016) - Published 22 December, 2016

Discontinuous transitions in globally coupled potential systems with additive noise

Rüdiger Kürsten and Ulrich Behn

Phys. Rev. E 94, 062135 (2016) - Published 23 December, 2016

Phase diagram of matrix compressed sensing

Christophe Schülke, Philip Schniter, and Lenka Zdeborová

Phys. Rev. E 94, 062136 (2016) - Published 27 December, 2016

Phase separation transition in a nonconserved two-species model

Urna Basu

Phys. Rev. E 94, 062137 (2016) - Published 27 December, 2016

Dissipative stochastic sandpile model on small-world networks: Properties of nondissipative and dissipative avalanches

Himangsu Bhaumik and S. B. Santra

Phys. Rev. E 94, 062138 (2016) - Published 27 December, 2016

Interacting Brownian dynamics in a nonequilibrium particle bath

Stefano Steffenoni, Klaus Kroy, and Gianmaria Falasco

Phys. Rev. E 94, 062139 (2016) - Published 28 December, 2016

Master equation approach to reversible and conservative discrete systems

Felipe Urbina and Sergio Rica

Phys. Rev. E 94, 062140 (2016) - Published 28 December, 2016

Multicritical absorbing phase transition in a class of exactly solvable models

Arijit Chatterjee and P. K. Mohanty

Phys. Rev. E 94, 062141 (2016) - Published 28 December, 2016

Relaxational processes in the one-dimensional Ising model with long-range interactions

Yusuke Tomita

Phys. Rev. E 94, 062142 (2016) - Published 28 December, 2016

Microscopic theory of a nonequilibrium open bosonic chain

Jader P. Santos and Gabriel T. Landi

Phys. Rev. E 94, 062143 (2016) - Published 28 December, 2016

Random-fractal Ansatz for the configurations of two-dimensional critical systems

Ching Hua Lee, Dai Ozaki, and Hiroaki Matsueda

Phys. Rev. E 94, 062144 (2016) - Published 28 December, 2016

Comparison between thermodynamic work and heat in autonomous quantum systems

Y. Y. Xu

Phys. Rev. E 94, 062145 (2016) - Published 28 December, 2016

Quench dynamics of the three-dimensional U(1) complex field theory: Geometric and scaling characterizations of the vortex tangle

Michikazu Kobayashi and Leticia F. Cugliandolo

Phys. Rev. E 94, 062146 (2016) - Published 29 December, 2016

Statistical entropy of open quantum systems

L. M. M. Durão and A. O. Caldeira

Phys. Rev. E 94, 062147 (2016) - Published 29 December, 2016

Overdamped stochastic thermodynamics with multiple reservoirs

Yûto Murashita and Massimiliano Esposito

Phys. Rev. E 94, 062148 (2016) - Published 29 December, 2016

This paper proposes a theory of overdamped stochastic thermodynamics in the presence of multiple reservoirs with different temperatures. After showing that naively extending the case with a single reservoir fails to give correct results, the authors construct a nontrivial overdamped approximation by starting from an underdamped description. They then show that the theory gives correct results in the case of a Brownian heat engine.

Zero-temperature directed polymer in random potential in 4+1 dimensions

Jin Min Kim

Phys. Rev. E 94, 062149 (2016) - Published 29 December, 2016

Non-Boltzmann stationary distributions and nonequilibrium relations in active baths

Aykut Argun, Ali-Reza Moradi, Erçaǧ Pinçe, Gokhan Baris Bagci, Alberto Imparato, and Giovanni Volpe

Phys. Rev. E 94, 062150 (2016) - Published 29 December, 2016

Energy spectrum of a Langevin oscillator

Y. Mishin and J. Hickman

Phys. Rev. E 94, 062151 (2016) - Published 30 December, 2016

Percolation in finite matching lattices

Stephan Mertens and Robert M. Ziff

Phys. Rev. E 94, 062152 (2016) - Published 30 December, 2016

Nonlinear Dynamics and Chaos

Multifractals embedded in short time series: An unbiased estimation of probability moment

Lu Qiu, Tianguang Yang, Yanhua Yin, Changgui Gu, and Huijie Yang

Phys. Rev. E 94, 062201 (2016) - Published 1 December, 2016

Interplay of degree correlations and cluster synchronization

Sarika Jalan, Anil Kumar, Alexey Zaikin, and Jürgen Kurths

Phys. Rev. E 94, 062202 (2016) - Published 1 December, 2016

Comparing the locking threshold for rings and chains of oscillators

Bertrand Ottino-Löffler and Steven H. Strogatz

Phys. Rev. E 94, 062203 (2016) - Published 2 December, 2016

Dynamics of phase oscillators with generalized frequency-weighted coupling

Can Xu, Jian Gao, Hairong Xiang, Wenjing Jia, Shuguang Guan, and Zhigang Zheng

Phys. Rev. E 94, 062204 (2016) - Published 6 December, 2016

Harvesting wind energy to detect weak signals using mechanical stochastic resonance

Barbara J. Breen, Jillian G. Rix, Samuel J. Ross, Yue Yu (俞越), John F. Lindner, Nathan Mathewson, Elliot R. Wainwright, and Ian Wilson

Phys. Rev. E 94, 062205 (2016) - Published 7 December, 2016

Impulse-induced generation of stationary and moving discrete breathers in nonlinear oscillator networks

J. Cuevas-Maraver, R. Chacón, and F. Palmero

Phys. Rev. E 94, 062206 (2016) - Published 12 December, 2016

Instability to a heterogeneous oscillatory state in randomly connected recurrent networks with delayed interactions

Célian Bimbard, Erwan Ledoux, and Srdjan Ostojic

Phys. Rev. E 94, 062207 (2016) - Published 12 December, 2016

Interaction between Liénard and Ikeda dynamics in a nonlinear electro-optical oscillator with delayed bandpass feedback

Bicky A. Marquez, Laurent Larger, Daniel Brunner, Yanne K. Chembo, and Maxime Jacquot

Phys. Rev. E 94, 062208 (2016) - Published 14 December, 2016

Lagrangian coherent structures during combustion instability in a premixed-flame backward-step combustor

Ramgopal Sampath, Manikandan Mathur, and Satyanarayanan R. Chakravarthy

Phys. Rev. E 94, 062209 (2016) - Published 14 December, 2016

Controlling ratchet transport via a finite kicked environment

S. A. Abdulack, M. W. Beims, and S. R. Lopes

Phys. Rev. E 94, 062210 (2016) - Published 19 December, 2016

Thermodynamics of a time-dependent and dissipative oval billiard: A heat transfer and billiard approach

Edson D. Leonel, Marcus Vinícius Camillo Galia, Luiz Antonio Barreiro, and Diego F. M. Oliveira

Phys. Rev. E 94, 062211 (2016) - Published 19 December, 2016

Emergence and analysis of Kuramoto-Sakaguchi-like models as an effective description for the dynamics of coupled Wien-bridge oscillators

L. Q. English, David Mertens, Saidou Abdoulkary, C. B. Fritz, K. Skowronski, and P. G. Kevrekidis

Phys. Rev. E 94, 062212 (2016) - Published 20 December, 2016

Optimal waveform for the entrainment of oscillators perturbed by an amplitude-modulated high-frequency force

Viktor Novičenko and Irmantas Ratas

Phys. Rev. E 94, 062213 (2016) - Published 20 December, 2016

Gaussian orthogonal ensemble statistics in graphene billiards with the shape of classically integrable billiards

Pei Yu, Zi-Yuan Li, Hong-Ya Xu, Liang Huang, Barbara Dietz, Celso Grebogi, and Ying-Cheng Lai

Phys. Rev. E 94, 062214 (2016) - Published 20 December, 2016

Effects of Landau-Lifshitz-Gilbert damping on domain growth

Kazue Kudo

Phys. Rev. E 94, 062215 (2016) - Published 21 December, 2016

Stationary waves on nonlinear quantum graphs. II. Application of canonical perturbation theory in basic graph structures

Sven Gnutzmann and Daniel Waltner

Phys. Rev. E 94, 062216 (2016) - Published 22 December, 2016

Noisy-flow-induced instability in a reaction-diffusion system

Shibashis Paul, Shyamolina Ghosh, and Deb Shankar Ray

Phys. Rev. E 94, 062217 (2016) - Published 23 December, 2016

Phase-flip and oscillation-quenching-state transitions through environmental diffusive coupling

Amit Sharma, Umesh Kumar Verma, and Manish Dev Shrimali

Phys. Rev. E 94, 062218 (2016) - Published 27 December, 2016

Coupled-mode-theory framework for nonlinear resonators comprising graphene

Thomas Christopoulos, Odysseas Tsilipakos, Nikolaos Grivas, and Emmanouil E. Kriezis

Phys. Rev. E 94, 062219 (2016) - Published 27 December, 2016

Perturbation-free prediction of resonance-assisted tunneling in mixed regular-chaotic systems

Normann Mertig, Julius Kullig, Clemens Löbner, Arnd Bäcker, and Roland Ketzmerick

Phys. Rev. E 94, 062220 (2016) - Published 28 December, 2016

Death and revival of chaos

Bálint Kaszás, Ulrike Feudel, and Tamás Tél

Phys. Rev. E 94, 062221 (2016) - Published 28 December, 2016

Networks and Complex Systems

Competition of simple and complex adoption on interdependent networks

Agnieszka Czaplicka, Raul Toral, and Maxi San Miguel

Phys. Rev. E 94, 062301 (2016) - Published 6 December, 2016

Densification and structural transitions in networks that grow by node copying

U. Bhat, P. L. Krapivsky, R. Lambiotte, and S. Redner

Phys. Rev. E 94, 062302 (2016) - Published 8 December, 2016

The authors introduce a simple growing network model that allows them to give extensive analytical results for its properties. The model grows by a copying mechanism in which a new node attaches to a randomly selected target node and also, with copying probability p, to each of the neighbors of the target. A key finding is that a transition from a sparse to a dense regime occurs as the copying probability increases beyond 1/2.

Inducing isolated-desynchronization states in complex network of coupled chaotic oscillators

Weijie Lin, Huiyan Li, Heping Ying, and Xingang Wang

Phys. Rev. E 94, 062303 (2016) - Published 8 December, 2016

Ring correlations in random networks

Mahdi Sadjadi and M. F. Thorpe

Phys. Rev. E 94, 062304 (2016) - Published 9 December, 2016

Metastable localization of diseases in complex networks

R. S. Ferreira, R. A. da Costa, S. N. Dorogovtsev, and J. F. F. Mendes

Phys. Rev. E 94, 062305 (2016) - Published 12 December, 2016

Parsimonious modeling with information filtering networks

Wolfram Barfuss, Guido Previde Massara, T. Di Matteo, and Tomaso Aste

Phys. Rev. E 94, 062306 (2016) - Published 13 December, 2016

Critical behavior of k-core percolation: Numerical studies

Deokjae Lee, Minjae Jo, and B. Kahng

Phys. Rev. E 94, 062307 (2016) - Published 15 December, 2016

Cycles and clustering in multiplex networks

Gareth J. Baxter, Davide Cellai, Sergey N. Dorogovtsev, and José F. F. Mendes

Phys. Rev. E 94, 062308 (2016) - Published 19 December, 2016

Inhibitory neurons promote robust critical firing dynamics in networks of integrate-and-fire neurons

Zhixin Lu, Shane Squires, Edward Ott, and Michelle Girvan

Phys. Rev. E 94, 062309 (2016) - Published 19 December, 2016

Unsupervised feature learning from finite data by message passing: Discontinuous versus continuous phase transition

Haiping Huang and Taro Toyoizumi

Phys. Rev. E 94, 062310 (2016) - Published 21 December, 2016

Delocalization of disturbances and the stability of ac electricity grids

Stefan Kettemann

Phys. Rev. E 94, 062311 (2016) - Published 21 December, 2016

Braess paradox in a network of totally asymmetric exclusion processes

Stefan Bittihn and Andreas Schadschneider

Phys. Rev. E 94, 062312 (2016) - Published 21 December, 2016

Eigenvalue tunneling and decay of quenched random network

V. Avetisov, M. Hovhannisyan, A. Gorsky, S. Nechaev, M. Tamm, and O. Valba

Phys. Rev. E 94, 062313 (2016) - Published 22 December, 2016

Control of epidemics via social partnership adjustment

Bin Wu, Shanjun Mao, Jiazeng Wang, and Da Zhou

Phys. Rev. E 94, 062314 (2016) - Published 23 December, 2016

From degree-correlated to payoff-correlated activity for an optimal resolution of social dilemmas

Alberto Aleta, Sandro Meloni, Matjaž Perc, and Yamir Moreno

Phys. Rev. E 94, 062315 (2016) - Published 23 December, 2016

Compensatory interactions to stabilize multiple steady states or mitigate the effects of multiple deregulations in biological networks

Gang Yang, Colin Campbell, and Réka Albert

Phys. Rev. E 94, 062316 (2016) - Published 28 December, 2016

Disorder-induced phase transition in an opinion dynamics model: Results in two and three dimensions

Sudip Mukherjee and Arnab Chatterjee

Phys. Rev. E 94, 062317 (2016) - Published 28 December, 2016

Hysteresis loop of nonperiodic outbreaks of recurrent epidemics

Hengcong Liu, Muhua Zheng, Dayu Wu, Zhenhua Wang, Jinming Liu, and Zonghua Liu

Phys. Rev. E 94, 062318 (2016) - Published 29 December, 2016

Infrequent social interaction can accelerate the spread of a persuasive idea

James Burridge and Michał Gnacik

Phys. Rev. E 94, 062319 (2016) - Published 30 December, 2016

Biological Physics

How to connect time-lapse recorded trajectories of motile microorganisms with dynamical models in continuous time

Jonas N. Pedersen, Liang Li, Cristian Grădinaru, Robert H. Austin, Edward C. Cox, and Henrik Flyvbjerg

Phys. Rev. E 94, 062401 (2016) - Published 6 December, 2016

Rotational tumbling of Escherichia coli aggregates under shear

R. Portela, P. Patrício, P. L. Almeida, R. G. Sobral, J. M. Franco, and C. R. Leal

Phys. Rev. E 94, 062402 (2016) - Published 8 December, 2016

Electronic structure and carrier transfer in B-DNA monomer polymers and dimer polymers: Stationary and time-dependent aspects of a wire model versus an extended ladder model

K. Lambropoulos, M. Chatzieleftheriou, A. Morphis, K. Kaklamanis, R. Lopp, M. Theodorakou, M. Tassi, and C. Simserides

Phys. Rev. E 94, 062403 (2016) - Published 12 December, 2016

Shape transitions during clathrin-induced endocytosis

Gaurav Kumar and Anirban Sain

Phys. Rev. E 94, 062404 (2016) - Published 16 December, 2016

Thermal unfolding of myoglobin in the Landau-Ginzburg-Wilson approach

Xubiao Peng, Adam K. Sieradzan, and Antti J. Niemi

Phys. Rev. E 94, 062405 (2016) - Published 16 December, 2016

Scaling, crumpled wires, and genome packing in virions

V. H. de Holanda and M. A. F. Gomes

Phys. Rev. E 94, 062406 (2016) - Published 19 December, 2016

Stiffer double-stranded DNA in two-dimensional confinement due to bending anisotropy

H. Salari, B. Eslami-Mossallam, H. F. Ranjbar, and M. R. Ejtehadi

Phys. Rev. E 94, 062407 (2016) - Published 19 December, 2016

Stochastic epidemic dynamics on extremely heterogeneous networks

César Parra-Rojas, Thomas House, and Alan J. McKane

Phys. Rev. E 94, 062408 (2016) - Published 19 December, 2016

Complete coverage of space favors modularity of the grid system in the brain

A. Sanzeni, V. Balasubramanian, G. Tiana, and M. Vergassola

Phys. Rev. E 94, 062409 (2016) - Published 20 December, 2016

Spatial dispersal of bacterial colonies induces a dynamical transition from local to global quorum sensing

Tahir I. Yusufaly and James Q. Boedicker

Phys. Rev. E 94, 062410 (2016) - Published 21 December, 2016

Critical dynamics on a large human Open Connectome network

Géza Ódor

Phys. Rev. E 94, 062411 (2016) - Published 23 December, 2016

Intermediate regime and a phase diagram of red blood cell dynamics in a linear flow

Michael Levant and Victor Steinberg

Phys. Rev. E 94, 062412 (2016) - Published 27 December, 2016

Analytic framework for a stochastic binary biological switch

Guilherme C. P. Innocentini, Sarah Guiziou, Jerome Bonnet, and Ovidiu Radulescu

Phys. Rev. E 94, 062413 (2016) - Published 28 December, 2016

Relaxation dynamics of a compressible bilayer vesicle containing highly viscous fluid

T. V. Sachin Krishnan, Ryuichi Okamoto, and Shigeyuki Komura

Phys. Rev. E 94, 062414 (2016) - Published 30 December, 2016

Solitonlike attractor for blood vessel tip density in angiogenesis

L. L. Bonilla, M. Carretero, and F. Terragni

Phys. Rev. E 94, 062415 (2016) - Published 30 December, 2016

Polymers

Origin of two maxima in specific heat in enthalpy relaxation under thermal history composed of cooling, annealing, and heating

Waki Sakatsuji, Takashi Konishi, and Yoshihisa Miyamoto

Phys. Rev. E 94, 062501 (2016) - Published 5 December, 2016

Correlated and cooperative motions in segmental relaxation: Influence of constitutive unit weight and intermolecular interactions

Bidur Rijal, Jorge Arturo Soto Puente, Bienvenu Atawa, Laurent Delbreilh, Kateryna Fatyeyeva, Allisson Saiter, and Eric Dargent

Phys. Rev. E 94, 062502 (2016) - Published 12 December, 2016

Dynamics of comb-of-comb-network polymers in random layered flows

Divya Katyal and Rama Kant

Phys. Rev. E 94, 062503 (2016) - Published 27 December, 2016

Colloids, Complex Fluids, and Active Matter

Probing heterogeneous dynamics from spatial density correlation in glass-forming liquids

Yan-Wei Li, You-Liang Zhu, and Zhao-Yan Sun

Phys. Rev. E 94, 062601 (2016) - Published 1 December, 2016

Depletion forces on circular and elliptical obstacles induced by active matter

L. R. Leite, D. Lucena, F. Q. Potiguar, and W. P. Ferreira

Phys. Rev. E 94, 062602 (2016) - Published 2 December, 2016

Gaussian theory for spatially distributed self-propelled particles

Hamid Seyed-Allaei, Lutz Schimansky-Geier, and Mohammad Reza Ejtehadi

Phys. Rev. E 94, 062603 (2016) - Published 12 December, 2016

Effects of confinement between attractive and repulsive walls on the thermodynamics of an anomalous fluid

Fabio Leoni and Giancarlo Franzese

Phys. Rev. E 94, 062604 (2016) - Published 13 December, 2016

Depinning and heterogeneous dynamics of colloidal crystal layers under shear flow

Sascha Gerloff and Sabine H. L. Klapp

Phys. Rev. E 94, 062605 (2016) - Published 13 December, 2016

Can phoretic particles swim in two dimensions?

David Sondak, Cory Hawley, Siyu Heng, Rebecca Vinsonhaler, Eric Lauga, and Jean-Luc Thiffeault

Phys. Rev. E 94, 062606 (2016) - Published 16 December, 2016

Tuning the phase diagram of colloid-polymer mixtures via Yukawa interactions

Álvaro González García and Remco Tuinier

Phys. Rev. E 94, 062607 (2016) - Published 16 December, 2016

Shear-induced solidification of athermal systems with weak attraction

Wen Zheng, Hao Liu, and Ning Xu

Phys. Rev. E 94, 062608 (2016) - Published 19 December, 2016

Rheology of sediment transported by a laminar flow

M. Houssais, C. P. Ortiz, D. J. Durian, and D. J. Jerolmack

Phys. Rev. E 94, 062609 (2016) - Published 19 December, 2016

Discontinuous thinning in active microrheology of soft complex matter

R. Wulfert, U. Seifert, and T. Speck

Phys. Rev. E 94, 062610 (2016) - Published 27 December, 2016

Single-particle dynamics near the glass transition of a metallic glass

Y. J. Lü and W. H. Wang

Phys. Rev. E 94, 062611 (2016) - Published 28 December, 2016

Order-disorder transition in repulsive self-propelled particle systems

Takayuki Hiraoka, Takashi Shimada, and Nobuyasu Ito

Phys. Rev. E 94, 062612 (2016) - Published 29 December, 2016

Mechanics and stability of vesicles and droplets in confined spaces

Eduard Benet and Franck J. Vernerey

Phys. Rev. E 94, 062613 (2016) - Published 29 December, 2016

Negative pressure in shear thickening band of a dilatant fluid

Shin-ichiro Nagahiro and Hiizu Nakanishi

Phys. Rev. E 94, 062614 (2016) - Published 29 December, 2016

Liquid Crystals

Elastic interactions between topological defects in chiral nematic shells

Alexandre Darmon, Olivier Dauchot, Teresa Lopez-Leon, and Michael Benzaquen

Phys. Rev. E 94, 062701 (2016) - Published 5 December, 2016

Rotational diffusion of shape switching particles in nematic liquid crystals

R. F. de Souza and C. Zannoni

Phys. Rev. E 94, 062702 (2016) - Published 9 December, 2016

Nonsingular defects and self-assembly of colloidal particles in cholesteric liquid crystals

Rahul P. Trivedi, Mykola Tasinkevych, and Ivan I. Smalyukh

Phys. Rev. E 94, 062703 (2016) - Published 14 December, 2016

Empty smectic liquid crystals of hard nanorings: Insights from a second-virial theory

H. H. Wensink and C. Avendaño

Phys. Rev. E 94, 062704 (2016) - Published 14 December, 2016

Viscoelastic nematodynamics

Stefano S. Turzi

Phys. Rev. E 94, 062705 (2016) - Published 27 December, 2016

Films and Interfaces

Stabilizing effect of tip splitting on the interface motion

Michal Pecelerowicz and Piotr Szymczak

Phys. Rev. E 94, 062801 (2016) - Published 19 December, 2016

Capillary waves and the decay of density correlations at liquid surfaces

Jose Hernández-Muñoz, Enrique Chacón, and Pedro Tarazona

Phys. Rev. E 94, 062802 (2016) - Published 27 December, 2016

Monte Carlo simulation of evaporation-driven self-assembly in suspensions of colloidal rods

Nikolai I. Lebovka, Nikolai V. Vygornitskii, Volodymyr A. Gigiberiya, and Yuri Yu. Tarasevich

Phys. Rev. E 94, 062803 (2016) - Published 30 December, 2016

Granular Materials

Packing of nonoverlapping cubic particles: Computational algorithms and microstructural characteristics

Hessam Malmir, Muhammad Sahimi, and M. Reza Rahimi Tabar

Phys. Rev. E 94, 062901 (2016) - Published 1 December, 2016

Nonvibrating granular model for a glass-forming liquid: Equilibration and aging

C. Tapia-Ignacio, J. Garcia-Serrano, and F. Donado

Phys. Rev. E 94, 062902 (2016) - Published 1 December, 2016

Effects of grain size distribution on the packing fraction and shear strength of frictionless disk packings

Nicolas Estrada

Phys. Rev. E 94, 062903 (2016) - Published 16 December, 2016

Strength of anisotropy in a granular material: Linear versus nonlinear contact model

Luigi La Ragione, Marica Gammariello, and Giuseppina Recchia

Phys. Rev. E 94, 062904 (2016) - Published 19 December, 2016

Contact changes of sheared systems: Scaling, correlations, and mechanisms

Merlijn S. van Deen, Brian P. Tighe, and Martin van Hecke

Phys. Rev. E 94, 062905 (2016) - Published 21 December, 2016

Vertical dynamics of a horizontally oscillating active object in a two-dimensional granular medium

Ling Huang, Xianwen Ran, and Raphael Blumenfeld

Phys. Rev. E 94, 062906 (2016) - Published 30 December, 2016

Solid Mechanics

Structure of curved crystals in the thermodynamic limit and the perfect screening condition

Alex Travesset

Phys. Rev. E 94, 063001 (2016) - Published 13 December, 2016

This paper examines the distribution of defects in curved two-dimensional crystals in the limit of an arbitrarily large number of particles. The author focuses on closed manifolds and presents results for spheres and tori, for which experimental and numerical results are available. The case of more general geometries is also discussed.

Inverted cones and their elastic creases

Keith A. Seffen

Phys. Rev. E 94, 063002 (2016) - Published 19 December, 2016

Static and dynamic friction of hierarchical surfaces

Gianluca Costagliola, Federico Bosia, and Nicola M. Pugno

Phys. Rev. E 94, 063003 (2016) - Published 20 December, 2016

Thermal effects in dislocation theory

J. S. Langer

Phys. Rev. E 94, 063004 (2016) - Published 22 December, 2016

Asymptotic self-restabilization of a continuous elastic structure

F. Bosi, D. Misseroni, F. Dal Corso, S. Neukirch, and D. Bigoni

Phys. Rev. E 94, 063005 (2016) - Published 27 December, 2016

Fluid Dynamics

Lagrangian statistics of mesoscale turbulence in a natural environment: The Agulhas return current

Francesco Carbone, Christian N. Gencarelli, and Ian M. Hedgecock

Phys. Rev. E 94, 063101 (2016) - Published 5 December, 2016

Anisotropic macroturbulence and diffusion associated with a westward zonal jet: From laboratory to planetary atmospheres and oceans

Boris Galperin, Jesse Hoemann, Stefania Espa, Gabriella Di Nitto, and Guglielmo Lacorata

Phys. Rev. E 94, 063102 (2016) - Published 9 December, 2016

Regularity criterion for solutions of the three-dimensional Cahn-Hilliard-Navier-Stokes equations and associated computations

John D. Gibbon, Nairita Pal, Anupam Gupta, and Rahul Pandit

Phys. Rev. E 94, 063103 (2016) - Published 12 December, 2016

Alternative mechanism for coffee-ring deposition based on active role of free surface

Saeed Jafari Kang, Vahid Vandadi, James D. Felske, and Hassan Masoud

Phys. Rev. E 94, 063104 (2016) - Published 12 December, 2016

Spectral energy cascade of body rotations and oscillations under turbulence

Yaqing Jin, Sheng Ji, and Leonardo P. Chamorro

Phys. Rev. E 94, 063105 (2016) - Published 12 December, 2016

Modes of electrokinetic instability for imperfect electric membranes

G. S. Ganchenko, E. N. Kalaydin, J. Schiffbauer, and E. A. Demekhin

Phys. Rev. E 94, 063106 (2016) - Published 12 December, 2016

Numerical simulations of the Princeton magnetorotational instability experiment with conducting axial boundaries

Xing Wei, Hantao Ji, Jeremy Goodman, Fatima Ebrahimi, Erik Gilson, Frank Jenko, and Karl Lackner

Phys. Rev. E 94, 063107 (2016) - Published 16 December, 2016

Effect of long-range electrostatic repulsion on pore clogging during microfiltration

Sheng Chen, Wenwei Liu, and Shuiqing Li

Phys. Rev. E 94, 063108 (2016) - Published 19 December, 2016

Oscillation-induced sand dunes in a liquid-filled rotating cylinder

Veronika Dyakova, Victor Kozlov, and Denis Polezhaev

Phys. Rev. E 94, 063109 (2016) - Published 19 December, 2016

Turbulent Rayleigh-Bénard convection with polymers: Understanding how heat flux is modified

Roberto Benzi, Emily S. C. Ching, and Elisabetta De Angelis

Phys. Rev. E 94, 063110 (2016) - Published 21 December, 2016

Dilatational viscosity of dilute particle-laden fluid interface at different contact angles

Sergey V. Lishchuk

Phys. Rev. E 94, 063111 (2016) - Published 22 December, 2016

Deviation-angle and trajectory statistics for inertial particles in turbulence

Akshay Bhatnagar, Anupam Gupta, Dhrubaditya Mitra, Prasad Perlekar, Michael Wilkinson, and Rahul Pandit

Phys. Rev. E 94, 063112 (2016) - Published 23 December, 2016

Application of the dissipative particle dynamics method to the instability problem of a liquid thread

Chao-jie Mo, Li-zi Qin, Fei Zhao, and Li-jun Yang

Phys. Rev. E 94, 063113 (2016) - Published 27 December, 2016

Effect of fluid inertia on the motion of a collinear swimmer

B. U. Felderhof

Phys. Rev. E 94, 063114 (2016) - Published 27 December, 2016

Effective slip for flow in a rotating channel bounded by stick-slip walls

Chiu-On Ng

Phys. Rev. E 94, 063115 (2016) - Published 28 December, 2016

Passive swimming in viscous oscillatory flows

Ikhee Jo, Yangyang Huang, Walter Zimmermann, and Eva Kanso

Phys. Rev. E 94, 063116 (2016) - Published 28 December, 2016

Droplet impact on soft viscoelastic surfaces

Longquan Chen, Elmar Bonaccurso, Peigang Deng, and Haibo Zhang

Phys. Rev. E 94, 063117 (2016) - Published 28 December, 2016

Thermal convection in a cylinder and the problem of planform selection in an internally heated fluid layer

V. V. Kolmychkov, O. V. Shcheritsa, and O. S. Mazhorova

Phys. Rev. E 94, 063118 (2016) - Published 29 December, 2016

Plasma Physics

Finger evolution of a gas bubble driven by atmospheric pressure plasma

Jia-Hau Shiu and Hong-Yu Chu

Phys. Rev. E 94, 063201 (2016) - Published 1 December, 2016

Theory of terahertz emission from femtosecond-laser-induced microplasmas

I. Thiele, R. Nuter, B. Bousquet, V. Tikhonchuk, S. Skupin, X. Davoine, L. Gremillet, and L. Bergé

Phys. Rev. E 94, 063202 (2016) - Published 6 December, 2016

Dynamic properties of the energy loss of multi-MeV charged particles traveling in two-component warm dense plasmas

Zhen-Guo Fu, Zhigang Wang, Meng-Lei Li, Da-Fang Li, Wei Kang, and Ping Zhang

Phys. Rev. E 94, 063203 (2016) - Published 9 December, 2016

Influence of ee+ creation on the radiative trapping in ultraintense fields of colliding laser pulses

C. Baumann and A. Pukhov

Phys. Rev. E 94, 063204 (2016) - Published 15 December, 2016

Decomposition of powerful axisymmetrically polarized laser pulses in underdense plasma

Nobuhiko Nakanii, Tomonao Hosokai, Naveen C. Pathak, Shinichi Masuda, Alexei G. Zhidkov, Hiroki Nakahara, Kenta Iwasa, Yoshio Mizuta, Naoki Takeguchi, Takamitsu P. Otsuka, Keiichi Sueda, Jumpei Ogino, Hirotaka Nakamura, Michiaki Mori, Masaki Kando, and Ryosuke Kodama

Phys. Rev. E 94, 063205 (2016) - Published 19 December, 2016

Exact scaling laws for helical three-dimensional two-fluid turbulent plasmas

N. Andrés, S. Galtier, and F. Sahraoui

Phys. Rev. E 94, 063206 (2016) - Published 20 December, 2016

Computational Physics

Lattice Boltzmann simulations of droplet formation in confined channels with thermocapillary flows

A. Gupta, M. Sbragaglia, D. Belardinelli, and K. Sugiyama

Phys. Rev. E 94, 063302 (2016) - Published 1 December, 2016

Mass-flow-rate-controlled fluid flow in nanochannels by particle insertion and deletion

Paul L. Barclay and Jennifer R. Lukes

Phys. Rev. E 94, 063303 (2016) - Published 2 December, 2016

Estimation of Reynolds number for flows around cylinders with lattice Boltzmann methods and artificial neural networks

Mauricio Carrillo, Ulices Que, and José A. González

Phys. Rev. E 94, 063304 (2016) - Published 5 December, 2016

Chebyshev-polynomial expansion of the localization length of Hermitian and non-Hermitian random chains

Naomichi Hatano and Joshua Feinberg

Phys. Rev. E 94, 063305 (2016) - Published 19 December, 2016

Gaseous microflow modeling using the Fokker-Planck equation

S. K. Singh, Chakradhar Thantanapally, and Santosh Ansumali

Phys. Rev. E 94, 063307 (2016) - Published 27 December, 2016

Constrained sampling method for analytic continuation

Anders W. Sandvik

Phys. Rev. E 94, 063308 (2016) - Published 27 December, 2016

COMMENTS

Comment on “Finite-size scaling of survival probability in branching processes”

Nanxin Wei and Gunnar Pruessner

Phys. Rev. E 94, 066101 (2016) - Published 15 December, 2016

Comment on “Critical wind speed at which trees break”

Axel Albrecht, Eric Badel, Vivien Bonnesoeur, Yves Brunet, Thiéry Constant, Pauline Défossez, Emmanuel de Langre, Sylvain Dupont, Meriem Fournier, Barry Gardiner, Stephen J. Mitchell, John R. Moore, Bruno Moulia, Bruce C. Nicoll, Karl J. Niklas, Mart-Jan Schelhaas, Hans-Christof Spatz, and Frank W. Telewski

Phys. Rev. E 94, 067001 (2016) - Published 13 December, 2016

Reply to “Comment on ‘Critical wind speed at which trees break’ ”

E. Virot, A. Ponomarenko, É. Dehandschoewercker, D. Quéré, and C. Clanet

Phys. Rev. E 94, 067002 (2016) - Published 13 December, 2016

ERRATA

Publisher's Note: Cascading failures in interdependent networks with finite functional components [Phys. Rev. E 94, 042304 (2016)]

M. A. Di Muro, S. V. Buldyrev, H. E. Stanley, and L. A. Braunstein

Phys. Rev. E 94, 069901 (2016) - Published 5 December, 2016

Erratum: Numerical computations of the dynamics of fluidic membranes and vesicles [Phys. Rev. E 92, 052704 (2015)]

John W. Barrett, Harald Garcke, and Robert Nürnberg

Phys. Rev. E 94, 069902 (2016) - Published 6 December, 2016

Publisher's Note: Laser propagation in dense magnetized plasma [Phys. Rev. E 94, 053207 (2016)]

S. X. Luan, W. Yu, F. Y. Li, Dong Wu, Z. M. Sheng, M. Y. Yu, and J. Zhang

Phys. Rev. E 94, 069903 (2016) - Published 6 December, 2016

Erratum: Collective dynamics of soft active particles [Phys. Rev. E 91, 032706 (2015)]

Ruben van Drongelen, Anshuman Pal, Carl P. Goodrich, and Timon Idema

Phys. Rev. E 94, 069904 (2016) - Published 27 December, 2016

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