Volume 94, Issue 4

October 2016

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Pattern formation with repulsive soft-core interactions: Discrete particle dynamics and Dean-Kawasaki equation

Jean-Baptiste Delfau, Hélène Ollivier, Cristóbal López, Bernd Blasius, and Emilio Hernández-García

Phys. Rev. E 94, 042120 (2016) - Published 17 October, 2016

Recent theoretical and simulation work has predicted the existence of a so-called cluster crystal, where soft colloidal particles interacting through a repulsive potential are able to aggregate and form periodic crystals of particle clusters. The authors study this phenomenon using Brownian dynamics simulation and analytical theory based on the Dean-Kawasaki equation, and focus on the appearance and structure of patterns in one- and two-dimensional realizations.

EDITORS' SUGGESTION

Classification and predictions of RNA pseudoknots based on topological invariants

Graziano Vernizzi, Henri Orland, and A. Zee

Phys. Rev. E 94, 042410 (2016) - Published 12 October, 2016

Merging concepts of statistical mechanics, renormalization, topology, and graph theory, this paper aims to shed light on the problem of the three dimensional structure of RNA. The authors propose to include an additional term in the partition function, associated with a renormalized crossing number, that accounts for the observation that RNA unevenly populates the repertoire of pseudoknots with the same genus.

EDITORS' SUGGESTION

Curvature regulation of the ciliary beat through axonemal twist

Pablo Sartori, Veikko F. Geyer, Jonathon Howard, and Frank Jülicher

Phys. Rev. E 94, 042426 (2016) - Published 28 October, 2016

This paper proposes a three-dimensional mechanical model of the beating of flagella, which help propel cells through fluids. A combination of parallel and normal stresses is shown to interact with a twisting mechanism to produce propulsion patterns observed in nature. The presence of twist might also help solve the question how the very small strains resulting from curvature of the flagella can regulate molecular motors.

EDITORS' SUGGESTION

Active microrheology in a colloidal glass

M. Gruber, G. C. Abade, A. M. Puertas, and M. Fuchs

Phys. Rev. E 94, 042602 (2016) - Published 11 October, 2016

This paper uses a modified version of mode-coupling theory to investigate the microrheology of a colloidal glass. By probing and following the dynamics of an individual test particle, two force regimes are identified, one that gives rise to a localized probe and one where the probe has a steady velocity. The authors then compare theory and simulations in the localized regime.

EDITORS' SUGGESTION

Self-assembly of colloidal particles in deformation landscapes of electrically driven layer undulations in cholesteric liquid crystals

Michael C. M. Varney, Qiaoxuan Zhang, Bohdan Senyuk, and Ivan I. Smalyukh

Phys. Rev. E 94, 042709 (2016) - Published 28 October, 2016

This paper studies the behavior of colloidal particles embedded in a cholesteric liquid-crystal matrix with an applied electric field. The authors observe that the presence of the colloidal objects reduces the threshold for deformations in the liquid crystal. Conversely, periodic deformations in the liquid crystal can be used to form patterns of colloidal particles, which also depend on the particles’ shape.

EDITORS' SUGGESTION

Monte Carlo method for critical systems in infinite volume: The planar Ising model

Victor Herdeiro and Benjamin Doyon

Phys. Rev. E 94, 043322 (2016) - Published 31 October, 2016

This paper presents a new approach for the treatment of finite-size effects in the simulation of critical phenomena using Monte Carlo methods, by using an iteratively implemented boundary condition that encodes the infinite volume beyond it. The method is then tested successfully in the planar Ising model.

RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Equilibrium free-energy differences at different temperatures from a single set of nonequilibrium transitions

Puneet Kumar Patra and Baidurya Bhattacharya

Phys. Rev. E 94, 040101(R) (2016) - Published 20 October, 2016

RAPID COMMUNICATION

Direct calculation of the critical Casimir force in a binary fluid

Francesco Puosi, David Lopes Cardozo, Sergio Ciliberto, and Peter C. W. Holdsworth

Phys. Rev. E 94, 040102(R) (2016) - Published 21 October, 2016

RAPID COMMUNICATION

Kinetic equation and nonequilibrium entropy for a quasi-two-dimensional gas

J. Javier Brey, Pablo Maynar, and M. I. García de Soria

Phys. Rev. E 94, 040103(R) (2016) - Published 27 October, 2016

Networks and Complex Systems

RAPID COMMUNICATION

Pairwise network information and nonlinear correlations

Elliot A. Martin, Jaroslav Hlinka, and Jörn Davidsen

Phys. Rev. E 94, 040301(R) (2016) - Published 27 October, 2016

Biological Physics

RAPID COMMUNICATION

Types and concentrations of metal ions affect local structure and dynamics of RNA

Jun Wang and Yi Xiao

Phys. Rev. E 94, 040401(R) (2016) - Published 24 October, 2016

Colloids, Complex Fluids, and Active Matter

RAPID COMMUNICATION

Gelation transitions of colloidal systems with bridging attractions

Guangcui Yuan, Junhua Luo, Charles C. Han, and Yun Liu

Phys. Rev. E 94, 040601(R) (2016) - Published 31 October, 2016

Fluid Dynamics

RAPID COMMUNICATION

Streamwise decay of localized states in channel flow

Stefan Zammert and Bruno Eckhardt

Phys. Rev. E 94, 041101(R) (2016) - Published 14 October, 2016

ARTICLES

Statistical Physics

Out-of-equilibrium stationary states, percolation, and subcritical instabilities in a fully nonconservative system

Mathieu Génois, Pascal Hersen, Eric Bertin, Sylvain Courrech du Pont, and Guillaume Grégoire

Phys. Rev. E 94, 042101 (2016) - Published 3 October, 2016

Efficient quantum transport in disordered interacting many-body networks

Adrian Ortega, Thomas Stegmann, and Luis Benet

Phys. Rev. E 94, 042102 (2016) - Published 3 October, 2016

Symmetry group and group representations associated with the thermodynamic covariance principle

Giorgio Sonnino, Jarah Evslin, Alberto Sonnino, György Steinbrecher, and Enrique Tirapegui

Phys. Rev. E 94, 042103 (2016) - Published 3 October, 2016

Phase transitions and multicritical behavior in the Ising model with dipolar interactions

M. A. Bab, C. M. Horowitz, M. L. Rubio Puzzo, and G. P. Saracco

Phys. Rev. E 94, 042104 (2016) - Published 4 October, 2016

Universal behavior of coupled order parameters below three dimensions

Julia Borchardt and Astrid Eichhorn

Phys. Rev. E 94, 042105 (2016) - Published 5 October, 2016

Thermodynamics of slow solutions to the gas-piston equations

G. Gubbiotti and D. Chiuchiù

Phys. Rev. E 94, 042106 (2016) - Published 7 October, 2016

Anisotropy of a cubic ferromagnet at criticality

A. Kudlis and A. I. Sokolov

Phys. Rev. E 94, 042107 (2016) - Published 10 October, 2016

Thermally induced passage and current of particles in a highly unstable optical potential

Artem Ryabov, Pavel Zemánek, and Radim Filip

Phys. Rev. E 94, 042108 (2016) - Published 10 October, 2016

Universality class of site and bond percolation on multifractal scale-free planar stochastic lattice

M. K. Hassan and M. M. Rahman

Phys. Rev. E 94, 042109 (2016) - Published 10 October, 2016

Thermodynamically consistent Langevin dynamics with spatially correlated noise predicting frictionless regime and transient attraction effect

M. Majka and P. F. Góra

Phys. Rev. E 94, 042110 (2016) - Published 10 October, 2016

Electrical conductivity of a monolayer produced by random sequential adsorption of linear $k$ -mers onto a square lattice

Yuri Yu. Tarasevich, Valeria A. Goltseva, Valeri V. Laptev, and Nikolai I. Lebovka

Phys. Rev. E 94, 042112 (2016) - Published 11 October, 2016

Piezothermal effect in a spinning gas

V. I. Geyko and N. J. Fisch

Phys. Rev. E 94, 042113 (2016) - Published 13 October, 2016

Superexponential fluctuation relation for dichotomous work reservoir systems

Sílvio M. Duarte Queirós

Phys. Rev. E 94, 042114 (2016) - Published 17 October, 2016

Lattice model of reduced jamming by a barrier

Emilio N. M. Cirillo, Oleh Krehel, Adrian Muntean, and Rutger van Santen

Phys. Rev. E 94, 042115 (2016) - Published 14 October, 2016

Blockage-induced condensation controlled by a local reaction

Emilio N. M. Cirillo, Matteo Colangeli, and Adrian Muntean

Phys. Rev. E 94, 042116 (2016) - Published 14 October, 2016

Role of the range of the interactions in thermal conduction

Carlos Olivares and Celia Anteneodo

Phys. Rev. E 94, 042117 (2016) - Published 17 October, 2016

Resummed mean-field inference for strongly coupled data

Hugo Jacquin and A. Rançon

Phys. Rev. E 94, 042118 (2016) - Published 17 October, 2016

Analysis of etching at a solid-solid interface

Washington S. Alves, Evandro A. Rodrigues, Henrique A. Fernandes, Bernardo A. Mello, Fernando A. Oliveira, and Ismael V. L. Costa

Phys. Rev. E 94, 042119 (2016) - Published 17 October, 2016

EDITORS' SUGGESTION

Pattern formation with repulsive soft-core interactions: Discrete particle dynamics and Dean-Kawasaki equation

Jean-Baptiste Delfau, Hélène Ollivier, Cristóbal López, Bernd Blasius, and Emilio Hernández-García

Phys. Rev. E 94, 042120 (2016) - Published 17 October, 2016

Stochastic transport in the presence of spatial disorder: Fluctuation-induced corrections to homogenization

Matthew J. Russell, Oliver E. Jensen, and Tobias Galla

Phys. Rev. E 94, 042121 (2016) - Published 17 October, 2016

Energy rectification in quantum graded spin chains: Analysis of the $XXZ$ model

Lucas Schuab, Emmanuel Pereira, and Gabriel T. Landi

Phys. Rev. E 94, 042122 (2016) - Published 19 October, 2016

Comparing the influence of distinct kinds of temporal disorder in a low-dimensional absorbing transition model

C. M. D. Solano, M. M. de Oliveira, and C. E. Fiore

Phys. Rev. E 94, 042123 (2016) - Published 19 October, 2016

Grand-canonical condensate fluctuations in weakly interacting Bose-Einstein condensates of light

Christoph Weiss and Jacques Tempere

Phys. Rev. E 94, 042124 (2016) - Published 19 October, 2016

From network reliability to the Ising model: A parallel scheme for estimating the joint density of states

Yihui Ren, Stephen Eubank, and Madhurima Nath

Phys. Rev. E 94, 042125 (2016) - Published 20 October, 2016

Liquid-liquid critical point in a simple analytical model of water

Tomaz Urbic

Phys. Rev. E 94, 042126 (2016) - Published 21 October, 2016

Hamiltonian analogs of combustion engines: A systematic exception to adiabatic decoupling

Lukas Gilz, Eike Thesing, and James R. Anglin

Phys. Rev. E 94, 042127 (2016) - Published 21 October, 2016

Inverse Gaussian and its inverse process as the subordinators of fractional Brownian motion

A. Wyłomańska, A. Kumar, R. Połoczański, and P. Vellaisamy

Phys. Rev. E 94, 042128 (2016) - Published 21 October, 2016

Stochastic Fokker-Planck equation in random environments

Paul C. Bressloff

Phys. Rev. E 94, 042129 (2016) - Published 21 October, 2016

Exact spectral densities of complex noise-plus-structure random matrices

Jacek Grela and Thomas Guhr

Phys. Rev. E 94, 042130 (2016) - Published 24 October, 2016

Role of Ito's lemma in sampling pinned diffusion paths in the continuous-time limit

P. J. Malsom and F. J. Pinski

Phys. Rev. E 94, 042131 (2016) - Published 24 October, 2016

Random walks with fractally correlated traps: Stretched exponential and power-law survival kinetics

Dan Plyukhin and Alex V. Plyukhin

Phys. Rev. E 94, 042132 (2016) - Published 24 October, 2016

Numerical analysis of homogeneous and inhomogeneous intermittent search strategies

Karsten Schwarz, Yannick Schröder, and Heiko Rieger

Phys. Rev. E 94, 042133 (2016) - Published 24 October, 2016

Distribution of residence times as a marker to distinguish different pathways for quantum transport

Samuel L. Rudge and Daniel S. Kosov

Phys. Rev. E 94, 042134 (2016) - Published 26 October, 2016

Controlling heat flows among three reservoirs asymmetrically coupled to two two-level systems

Zhong-Xiao Man, Nguyen Ba An, and Yun-Jie Xia

Phys. Rev. E 94, 042135 (2016) - Published 26 October, 2016

Ordered phase of the $O (N)$ model within the nonperturbative renormalization group

Marcela Peláez and Nicolás Wschebor

Phys. Rev. E 94, 042136 (2016) - Published 26 October, 2016

Phase transition in the parametric natural visibility graph

A. A. Snarskii and I. V. Bezsudnov

Phys. Rev. E 94, 042137 (2016) - Published 26 October, 2016

Directed percolation with a conserved field and the depinning transition

Hans-Karl Janssen and Olaf Stenull

Phys. Rev. E 94, 042138 (2016) - Published 27 October, 2016

Rhythmic behavior in a two-population mean-field Ising model

Francesca Collet, Marco Formentin, and Daniele Tovazzi

Phys. Rev. E 94, 042139 (2016) - Published 28 October, 2016

Memory effect in the upper bound of the heat flux induced by quantum fluctuations

T. Koide

Phys. Rev. E 94, 042140 (2016) - Published 28 October, 2016

Two-dimensional quantum percolation with binary nonzero hopping integrals

Brianna S. Dillon Thomas and Hisao Nakanishi

Phys. Rev. E 94, 042141 (2016) - Published 31 October, 2016

Nonlinear Dynamics and Chaos

Detrended fluctuation analysis and the difference between external drifts and intrinsic diffusionlike nonstationarity

Marc Höll, Holger Kantz, and Yu Zhou

Phys. Rev. E 94, 042201 (2016) - Published 3 October, 2016

Tunable $φ$ Josephson junction ratchet

R. Menditto, H. Sickinger, M. Weides, H. Kohlstedt, D. Koelle, R. Kleiner, and E. Goldobin

Phys. Rev. E 94, 042202 (2016) - Published 3 October, 2016

Calculation of mutual information for nonlinear communication channel at large signal-to-noise ratio

I. S. Terekhov, A. V. Reznichenko, and S. K. Turitsyn

Phys. Rev. E 94, 042203 (2016) - Published 5 October, 2016

Small chimera states without multistability in a globally delay-coupled network of four lasers

André Röhm, Fabian Böhm, and Kathy Lüdge

Phys. Rev. E 94, 042204 (2016) - Published 5 October, 2016

Observability coefficients for predicting the class of synchronizability from the algebraic structure of the local oscillators

Irene Sendiña-Nadal, Stefano Boccaletti, and Christophe Letellier

Phys. Rev. E 94, 042205 (2016) - Published 7 October, 2016

Nonlinear dynamics and intermittency in a turbulent reacting wake with density ratio as bifurcation parameter

Suhas Suresha, R. I. Sujith, Benjamin Emerson, and Tim Lieuwen

Phys. Rev. E 94, 042206 (2016) - Published 11 October, 2016

Cross-section fluctuations in chaotic scattering systems

Torleif E. O. Ericson, Barbara Dietz, and Achim Richter

Phys. Rev. E 94, 042207 (2016) - Published 12 October, 2016

Transport of chaotic trajectories from regions distant from or near to structures of regular motion of the Fermi-Ulam model

Nilson B. de Faria, Daniel S. Tavares, Wenderson C. S. de Paula, Edson D. Leonel, and Denis G. Ladeira

Phys. Rev. E 94, 042208 (2016) - Published 13 October, 2016

Stable and unstable periodic orbits in the one-dimensional lattice $ϕ^{4}$ theory

Kenichiro Aoki

Phys. Rev. E 94, 042209 (2016) - Published 13 October, 2016

Traveling phase waves in asymmetric networks of noisy chaotic attractors

Thomas K. DM. Peron, Jürgen Kurths, Francisco A. Rodrigues, Lutz Schimansky-Geier, and Bernard Sonnenschein

Phys. Rev. E 94, 042210 (2016) - Published 13 October, 2016

Long-range correlations in rectangular cavities containing pointlike perturbations

Małgorzata Białous, Vitalii Yunko, Szymon Bauch, Michał Ławniczak, Barbara Dietz, and Leszek Sirko

Phys. Rev. E 94, 042211 (2016) - Published 13 October, 2016

Effects of time-delayed feedback on the properties of self-sustained oscillators

S. Risau-Gusman

Phys. Rev. E 94, 042212 (2016) - Published 18 October, 2016

Diversity of coupled oscillators can enhance their synchronization

Ghazal Montaseri and Michael Meyer-Hermann

Phys. Rev. E 94, 042213 (2016) - Published 18 October, 2016

Randomness evaluation for an optically injected chaotic semiconductor laser by attractor reconstruction

Xiao-Zhou Li, Jun-Ping Zhuang, Song-Sui Li, Jian-Bo Gao, and Sze-Chun Chan

Phys. Rev. E 94, 042214 (2016) - Published 18 October, 2016

Oscillatory motion of a camphor grain in a one-dimensional finite region

Yuki Koyano, Tatsunari Sakurai, and Hiroyuki Kitahata

Phys. Rev. E 94, 042215 (2016) - Published 18 October, 2016

Parametric autoresonant excitation of the nonlinear Schrödinger equation

L. Friedland and A. G. Shagalov

Phys. Rev. E 94, 042216 (2016) - Published 18 October, 2016

Possibility of short-term probabilistic forecasts for large earthquakes making good use of the limitations of existing catalogs

Yoshito Hirata, Koji Iwayama, and Kazuyuki Aihara

Phys. Rev. E 94, 042217 (2016) - Published 20 October, 2016

Analytical and numerical study of travelling waves using the Maxwell-Cattaneo relaxation model extended to reaction-advection-diffusion systems

V. A. Sabelnikov, N. N. Petrova, and A. N. Lipatnikov

Phys. Rev. E 94, 042218 (2016) - Published 21 October, 2016

Spike latency and response properties of an excitable micropillar laser

F. Selmi, R. Braive, G. Beaudoin, I. Sagnes, R. Kuszelewicz, T. Erneux, and S. Barbay

Phys. Rev. E 94, 042219 (2016) - Published 24 October, 2016

Breathers and rogue waves excited by all-magnonic spin-transfer torque

Zai-Dong Li, Qiu-Yan Li, Tian-Fu Xu, and Peng-Bin He

Phys. Rev. E 94, 042220 (2016) - Published 25 October, 2016

Symmetric and asymmetric optical multipeak solitons on a continuous wave background in the femtosecond regime

Chong Liu, Zhan-Ying Yang, Li-Chen Zhao, Liang Duan, Guangye Yang, and Wen-Li Yang

Phys. Rev. E 94, 042221 (2016) - Published 25 October, 2016

Lévy-noise-induced transport in a rough triple-well potential

Yongge Li, Yong Xu, Jürgen Kurths, and Xiaole Yue

Phys. Rev. E 94, 042222 (2016) - Published 26 October, 2016

Differential-flow-induced transition of traveling wave patterns and wave splitting

Shyamolina Ghosh, Shibashis Paul, and Deb Shankar Ray

Phys. Rev. E 94, 042223 (2016) - Published 26 October, 2016

Self-attraction into spinning eigenstates of a mobile wave source by its emission back-reaction

Matthieu Labousse, Stéphane Perrard, Yves Couder, and Emmanuel Fort

Phys. Rev. E 94, 042224 (2016) - Published 27 October, 2016

Billiard with a handle

D. M. Naplekov and V. V. Yanovsky

Phys. Rev. E 94, 042225 (2016) - Published 31 October, 2016

Control of birhythmicity through conjugate self-feedback: Theory and experiment

Debabrata Biswas, Tanmoy Banerjee, and Jürgen Kurths

Phys. Rev. E 94, 042226 (2016) - Published 31 October, 2016

Networks and Complex Systems

Bifurcation transitions in gap-junction-coupled neurons

Annabelle Shaffer, Allison L. Harris, Rosangela Follmann, and Epaminondas Rosa, Jr.

Phys. Rev. E 94, 042301 (2016) - Published 3 October, 2016

“Hits” emerge through self-organized coordination in collective response of free agents

Anindya S. Chakrabarti and Sitabhra Sinha

Phys. Rev. E 94, 042302 (2016) - Published 3 October, 2016

Effect of interacting second- and third-order stimulus-dependent correlations on population-coding asymmetries

Lisandro Montangie and Fernando Montani

Phys. Rev. E 94, 042303 (2016) - Published 4 October, 2016

Cascading failures in interdependent networks with finite functional components

M. A. Di Muro, S. V. Buldyrev, H. E. Stanley, and L. A. Braunstein

Phys. Rev. E 94, 042304 (2016) - Published 5 October, 2016

Universality of market superstatistics

Mateusz Denys, Tomasz Gubiec, Ryszard Kutner, Maciej Jagielski, and H. Eugene Stanley

Phys. Rev. E 94, 042305 (2016) - Published 7 October, 2016

Population dynamics, information transfer, and spatial organization in a chemical reaction network under spatial confinement and crowding conditions

Giovanni Bellesia and Benjamin B. Bales

Phys. Rev. E 94, 042306 (2016) - Published 10 October, 2016

Multifractal cross-correlation effects in two-variable time series of complex network vertex observables

Paweł Oświȩcimka, Lorenzo Livi, and Stanisław Drożdż

Phys. Rev. E 94, 042307 (2016) - Published 12 October, 2016

Sampling methods for the quasistationary regime of epidemic processes on regular and complex networks

Renan S. Sander, Guilherme S. Costa, and Silvio C. Ferreira

Phys. Rev. E 94, 042308 (2016) - Published 14 October, 2016

Network exploration using true self-avoiding walks

Yup Kim, Seokjong Park, and Soon-Hyung Yook

Phys. Rev. E 94, 042309 (2016) - Published 14 October, 2016

Feedback control stabilization of critical dynamics via resource transport on multilayer networks: How glia enable learning dynamics in the brain

Yogesh S. Virkar, Woodrow L. Shew, Juan G. Restrepo, and Edward Ott

Phys. Rev. E 94, 042310 (2016) - Published 18 October, 2016

Cooperation driven by success-driven group formation

Attila Szolnoki and Xiaojie Chen

Phys. Rev. E 94, 042311 (2016) - Published 18 October, 2016

Stochastic inference with spiking neurons in the high-conductance state

Mihai A. Petrovici, Johannes Bill, Ilja Bytschok, Johannes Schemmel, and Karlheinz Meier

Phys. Rev. E 94, 042312 (2016) - Published 20 October, 2016

Input-output relationship in social communications characterized by spike train analysis

Takaaki Aoki, Taro Takaguchi, Ryota Kobayashi, and Renaud Lambiotte

Phys. Rev. E 94, 042313 (2016) - Published 24 October, 2016

Oslo model, hyperuniformity, and the quenched Edwards-Wilkinson model

Peter Grassberger, Deepak Dhar, and P. K. Mohanty

Phys. Rev. E 94, 042314 (2016) - Published 25 October, 2016

Modeling region-based interconnection for interdependent networks

Xiangrong Wang, Robert E. Kooij, and Piet Van Mieghem

Phys. Rev. E 94, 042315 (2016) - Published 27 October, 2016

Multiplexity and multireciprocity in directed multiplexes

Valerio Gemmetto, Tiziano Squartini, Francesco Picciolo, Franco Ruzzenenti, and Diego Garlaschelli

Phys. Rev. E 94, 042316 (2016) - Published 27 October, 2016

Biological Physics

Myocardial architecture and patient variability in clinical patterns of atrial fibrillation

Kishan A. Manani, Kim Christensen, and Nicholas S. Peters

Phys. Rev. E 94, 042401 (2016) - Published 4 October, 2016

Polymer models of the hierarchical folding of the Hox-B chromosomal locus

Carlo Annunziatella, Andrea M. Chiariello, Simona Bianco, and Mario Nicodemi

Phys. Rev. E 94, 042402 (2016) - Published 4 October, 2016

Controlling segregation speed of entangled polymers by the shapes: A simple model for eukaryotic chromosome segregation

Yuji Sakai, Masashi Tachikawa, and Atsushi Mochizuki

Phys. Rev. E 94, 042403 (2016) - Published 6 October, 2016

Species survival and scaling laws in hostile and disordered environments

Rodrigo P. Rocha, Wagner Figueiredo, Samir Suweis, and Amos Maritan

Phys. Rev. E 94, 042404 (2016) - Published 6 October, 2016

Peptide binding landscapes: Specificity and homophilicity across sequence space in a lattice model

Joohyun Jeon and M. Scott Shell

Phys. Rev. E 94, 042405 (2016) - Published 10 October, 2016

Emergence of flagellar beating from the collective behavior of individual ATP-powered dyneins

S. Namdeo and P. R. Onck

Phys. Rev. E 94, 042406 (2016) - Published 10 October, 2016

Strain-driven criticality underlies nonlinear mechanics of fibrous networks

A. Sharma, A. J. Licup, R. Rens, M. Vahabi, K. A. Jansen, G. H. Koenderink, and F. C. MacKintosh

Phys. Rev. E 94, 042407 (2016) - Published 11 October, 2016

Dielectrophoretic label-free immunoassay for rare-analyte quantification in biological samples

Logeeshan Velmanickam, Darrin Laudenbach, and Dharmakeerthi Nawarathna

Phys. Rev. E 94, 042408 (2016) - Published 11 October, 2016

Targeting functional motifs of a protein family

Pradeep Bhadola and Nivedita Deo

Phys. Rev. E 94, 042409 (2016) - Published 12 October, 2016

EDITORS' SUGGESTION

Classification and predictions of RNA pseudoknots based on topological invariants

Graziano Vernizzi, Henri Orland, and A. Zee

Phys. Rev. E 94, 042410 (2016) - Published 12 October, 2016

Inhibitory loop robustly induces anticipated synchronization in neuronal microcircuits

Fernanda S. Matias, Leonardo L. Gollo, Pedro V. Carelli, Claudio R. Mirasso, and Mauro Copelli

Phys. Rev. E 94, 042411 (2016) - Published 13 October, 2016

Biasing effects of receptor-ligand complexes on protein-unfolding statistics

Constantin Schoeler, Tobias Verdorfer, Hermann E. Gaub, and Michael A. Nash

Phys. Rev. E 94, 042412 (2016) - Published 13 October, 2016

Population dynamics in an intermittent refuge

E. H. Colombo and C. Anteneodo

Phys. Rev. E 94, 042413 (2016) - Published 14 October, 2016

Uniform asymptotic approximation of diffusion to a small target: Generalized reaction models

Samuel A. Isaacson, Ava J. Mauro, and Jay Newby

Phys. Rev. E 94, 042414 (2016) - Published 18 October, 2016

Analytical calculation of the lipid bilayer bending modulus

Boris Kheyfets, Timur Galimzyanov, Anna Drozdova, and Sergei Mukhin

Phys. Rev. E 94, 042415 (2016) - Published 18 October, 2016

Optimal inference strategies and their implications for the linear noise approximation

David Hartich and Udo Seifert

Phys. Rev. E 94, 042416 (2016) - Published 21 October, 2016

Hybrid asymptotic-numerical approach for estimating first-passage-time densities of the two-dimensional narrow capture problem

A. E. Lindsay, R. T. Spoonmore, and J. C. Tzou

Phys. Rev. E 94, 042418 (2016) - Published 24 October, 2016

Frequency modulation of stochastic gene expression bursts by strongly interacting small RNAs

Niraj Kumar, Tao Jia, Kourosh Zarringhalam, and Rahul V. Kulkarni

Phys. Rev. E 94, 042419 (2016) - Published 24 October, 2016

Experimental observation of phase-flip transitions in the brain

Nicholas M. Dotson and Charles M. Gray

Phys. Rev. E 94, 042420 (2016) - Published 24 October, 2016

Algebraic study of drifting spiral waves

Marcel Wellner

Phys. Rev. E 94, 042421 (2016) - Published 26 October, 2016

Solution of classical evolutionary models in the limit when the diffusion approximation breaks down

David B. Saakian and Chin-Kun Hu

Phys. Rev. E 94, 042422 (2016) - Published 26 October, 2016

Computational model for amoeboid motion: Coupling membrane and cytosol dynamics

Adrian Moure and Hector Gomez

Phys. Rev. E 94, 042423 (2016) - Published 26 October, 2016

Effects of spatial diffusion on nonequilibrium steady states in a model for prebiotic evolution

B. F. Intoy, A. Wynveen, and J. W. Halley

Phys. Rev. E 94, 042424 (2016) - Published 28 October, 2016

Comparison of cellular oscillations driven by noise or deterministic mechanisms under cell-size scaling

Chong He, Keng-Hwee Chiam, and Lock Yue Chew

Phys. Rev. E 94, 042425 (2016) - Published 28 October, 2016

EDITORS' SUGGESTION

Curvature regulation of the ciliary beat through axonemal twist

Pablo Sartori, Veikko F. Geyer, Jonathon Howard, and Frank Jülicher

Phys. Rev. E 94, 042426 (2016) - Published 28 October, 2016

Interplay between excitability type and distributions of neuronal connectivity determines neuronal network synchronization

Sima Mofakham, Christian G. Fink, Victoria Booth, and Michal R. Zochowski

Phys. Rev. E 94, 042427 (2016) - Published 31 October, 2016

Polymers

Micromechanical model for isolated polymer-colloid clusters under tension

Roozbeh Dargazany, Jiaqi Lin, Leila Khalili, Mikhail Itskov, Hsieh Chen, and Alfredo Alexander-Katz

Phys. Rev. E 94, 042501 (2016) - Published 10 October, 2016

Correlation-induced DNA adsorption on like-charged membranes

Sahin Buyukdagli and Ralf Blossey

Phys. Rev. E 94, 042502 (2016) - Published 12 October, 2016

Design of block-copolymer-based micelles for active and passive targeting

Jérôme G. J. L. Lebouille, Frans A. M. Leermakers, Martien A. Cohen Stuart, and Remco Tuinier

Phys. Rev. E 94, 042503 (2016) - Published 21 October, 2016

Colloids, Complex Fluids, and Active Matter

Dynamics of ellipsoidal tracers in swimming algal suspensions

Ou Yang, Yi Peng, Zhengyang Liu, Chao Tang, Xinliang Xu, and Xiang Cheng

Phys. Rev. E 94, 042601 (2016) - Published 10 October, 2016

EDITORS' SUGGESTION

Active microrheology in a colloidal glass

M. Gruber, G. C. Abade, A. M. Puertas, and M. Fuchs

Phys. Rev. E 94, 042602 (2016) - Published 11 October, 2016

Waves of DNA: Propagating excitations in extended nanoconfined polymers

Alexander R. Klotz, Hendrick W. de Haan, and Walter W. Reisner

Phys. Rev. E 94, 042603 (2016) - Published 17 October, 2016

Imaging grain boundary grooves in hard-sphere colloidal bicrystals

Eric Maire, Emily Redston, Maria Persson Gulda, David A. Weitz, and Frans Spaepen

Phys. Rev. E 94, 042604 (2016) - Published 17 October, 2016

Yielding of glass under shear: A directed percolation transition precedes shear-band formation

Gaurav Prakash Shrivastav, Pinaki Chaudhuri, and Jürgen Horbach

Phys. Rev. E 94, 042605 (2016) - Published 19 October, 2016

Vibrational properties of quasi-two-dimensional colloidal glasses with varying interparticle attraction

Matthew D. Gratale, Xiaoguang Ma, Zoey S. Davidson, Tim Still, Piotr Habdas, and A. G. Yodh

Phys. Rev. E 94, 042606 (2016) - Published 20 October, 2016

Time-dependent electrohydrodynamics of a compressible viscoelastic capsule in the small-deformation limit

Rochish M. Thaokar

Phys. Rev. E 94, 042607 (2016) - Published 21 October, 2016

Reanalysis of the electrode polarization in electrolytic cells limited by blocking electrodes

J. Ross Macdonald and G. Barbero

Phys. Rev. E 94, 042608 (2016) - Published 24 October, 2016

Renormalized jellium model for colloidal mixtures

María Isabel García de Soria, Carlos E. Álvarez, and Emmanuel Trizac

Phys. Rev. E 94, 042609 (2016) - Published 24 October, 2016

Inertial hydrodynamic ratchet: Rectification of colloidal flow in tubes of variable diameter

František Slanina

Phys. Rev. E 94, 042610 (2016) - Published 26 October, 2016

Coarse-grained molecular dynamics simulation of binary charged lipid membranes: Phase separation and morphological dynamics

Hiroaki Ito, Yuji Higuchi, and Naofumi Shimokawa

Phys. Rev. E 94, 042611 (2016) - Published 26 October, 2016

Decoupled length scales for diffusivity and viscosity in glass-forming liquids

H. L. Peng and Th. Voigtmann

Phys. Rev. E 94, 042612 (2016) - Published 26 October, 2016

Rotating colloids in rotating magnetic fields: Dipolar relaxation and hydrodynamic coupling

Anna C. H. Coughlan and Michael A. Bevan

Phys. Rev. E 94, 042613 (2016) - Published 26 October, 2016

Response of a doublet to a nearby dc electrode of uniform potential

Christopher L. Wirth and Sri Harsha Nuthalapati

Phys. Rev. E 94, 042614 (2016) - Published 27 October, 2016

Charged plate in asymmetric electrolytes: One-loop renormalization of surface charge density and Debye length due to ionic correlations

Mingnan Ding, Bing-Sui Lu, and Xiangjun Xing

Phys. Rev. E 94, 042615 (2016) - Published 31 October, 2016

Liquid Crystals

Relaxation with long-period oscillation in defect turbulence of planar nematic liquid crystals

Takayuki Narumi, Yosuke Mikami, Tomoyuki Nagaya, Hirotaka Okabe, Kazuhiro Hara, and Yoshiki Hidaka

Phys. Rev. E 94, 042701 (2016) - Published 4 October, 2016

Computer simulation study of a mesogenic lattice model based on long-range dispersion interactions

Silvano Romano

Phys. Rev. E 94, 042702 (2016) - Published 18 October, 2016

Bragg reflection band width and optical rotatory dispersion of cubic blue-phase liquid crystals

Hiroyuki Yoshida, Konkanok Anucha, Yasuhiro Ogawa, Yuto Kawata, Masanori Ozaki, Jun-ichi Fukuda, and Hirotsugu Kikuchi

Phys. Rev. E 94, 042703 (2016) - Published 21 October, 2016

Magnetically tunable selective reflection of light by heliconical cholesterics

S. M. Salili, J. Xiang, H. Wang, Q. Li, D. A. Paterson, J. M. D. Storey, C. T. Imrie, O. D. Lavrentovich, S. N. Sprunt, J. T. Gleeson, and A. Jákli

Phys. Rev. E 94, 042705 (2016) - Published 21 October, 2016

Persistent quasiplanar nematic texture: Its properties and topological defects

Pawel Pieranski, Maria Helena Godinho, and Simon Čopar

Phys. Rev. E 94, 042706 (2016) - Published 26 October, 2016

Numerical study of light-induced phase behavior of smectic solids

Hayoung Chung, Jaesung Park, and Maenghyo Cho

Phys. Rev. E 94, 042707 (2016) - Published 26 October, 2016

Magnetic-field-induced stepwise director reorientation and untwisting of a planar cholesteric structure with finite anchoring energy

A. N. Zakhlevnykh and V. S. Shavkunov

Phys. Rev. E 94, 042708 (2016) - Published 28 October, 2016

EDITORS' SUGGESTION

Self-assembly of colloidal particles in deformation landscapes of electrically driven layer undulations in cholesteric liquid crystals

Michael C. M. Varney, Qiaoxuan Zhang, Bohdan Senyuk, and Ivan I. Smalyukh

Phys. Rev. E 94, 042709 (2016) - Published 28 October, 2016

Films and Interfaces

Stability of Cassie-Baxter wetting states on microstructured surfaces

Hao-Yuan Guo, Bo Li, and Xi-Qiao Feng

Phys. Rev. E 94, 042801 (2016) - Published 5 October, 2016

Simultaneous observation of asymmetric speed-dependent capillary force hysteresis and slow relaxation of a suddenly stopped moving contact line

Dongshi Guan, Yong Jian Wang, Elisabeth Charlaix, and Penger Tong

Phys. Rev. E 94, 042802 (2016) - Published 5 October, 2016

Size-dependent contact angle and the wetting and drying transition of a droplet adsorbed onto a spherical substrate: Line-tension effect

Masao Iwamatsu

Phys. Rev. E 94, 042803 (2016) - Published 5 October, 2016

Interaction of polymer-coated silicon nanocrystals with lipid bilayers and surfactant interfaces

Ahmed Elbaradei, Samuel L. Brown, Joseph B. Miller, Sylvio May, and Erik K. Hobbie

Phys. Rev. E 94, 042804 (2016) - Published 6 October, 2016

Polymorph selection and nucleation pathway in the crystallization of Hertzian spheres

Wenze Ouyang, Cuiliu Fu, Zhiwei Sun, and Shenghua Xu

Phys. Rev. E 94, 042805 (2016) - Published 17 October, 2016

Analytical results for the wrinkling of graphene on nanoparticles

M. Guedda, N. Alaa, and M. Benlahsen

Phys. Rev. E 94, 042806 (2016) - Published 17 October, 2016

Wetting hysteresis of nanodrops on nanorough surfaces

Cheng-Chung Chang, Yu-Jane Sheng, and Heng-Kwong Tsao

Phys. Rev. E 94, 042807 (2016) - Published 24 October, 2016

Shape and coarsening dynamics of strained islands

Guido Schifani, Thomas Frisch, Mederic Argentina, and Jean-Noël Aqua

Phys. Rev. E 94, 042808 (2016) - Published 27 October, 2016

Analytic height correlation function of rough surfaces derived from light scattering

M. Zamani, F. Shafiei, S. M. Fazeli, M. C. Downer, and G. R. Jafari

Phys. Rev. E 94, 042809 (2016) - Published 28 October, 2016

Granular Materials

Binary mixtures of disks and elongated particles: Texture and mechanical properties

Emilien Azéma, Itthichai Preechawuttipong, and Farhang Radjai

Phys. Rev. E 94, 042901 (2016) - Published 14 October, 2016

Scaling of heat transfer and temperature distribution in granular flows in rotating drums

B. Yohannes, H. Emady, K. Anderson, I. Paredes, M. Javed, W. Borghard, F. J. Muzzio, B. J. Glasser, and A. M. Cuitiño

Phys. Rev. E 94, 042902 (2016) - Published 14 October, 2016

Computer simulation of the effect of deformation on the morphology and flow properties of porous media

Sahar Bakhshian and Muhammad Sahimi

Phys. Rev. E 94, 042903 (2016) - Published 24 October, 2016

Solid Mechanics

Evolution of a primary pulse in the granular dimers mounted on a linear elastic foundation: An analytical and numerical study

Zaid Ahsan and K. R. Jayaprakash

Phys. Rev. E 94, 043001 (2016) - Published 13 October, 2016

Uncovering the deformation mechanisms of origami metamaterials by introducing generic degree-four vertices

Hongbin Fang, Suyi Li, Huimin Ji, and K. W. Wang

Phys. Rev. E 94, 043002 (2016) - Published 24 October, 2016

Mesoscopic approach to subcritical fatigue crack growth

Maycon S. Araújo, André P. Vieira, José S. Andrade, Jr., and Hans J. Herrmann

Phys. Rev. E 94, 043003 (2016) - Published 27 October, 2016

Fluid Dynamics

Multiscaling in superfluid turbulence: A shell-model study

Vishwanath Shukla and Rahul Pandit

Phys. Rev. E 94, 043101 (2016) - Published 3 October, 2016

Diffusion in anisotropic fully developed turbulence: Turbulent Prandtl number

E. Jurčišinová and M. Jurčišin

Phys. Rev. E 94, 043102 (2016) - Published 5 October, 2016

Connections between centrifugal, stratorotational, and radiative instabilities in viscous Taylor-Couette flow

Colin Leclercq, Florian Nguyen, and Rich R. Kerswell

Phys. Rev. E 94, 043103 (2016) - Published 6 October, 2016

Extreme dissipation event due to plume collision in a turbulent convection cell

Jörg Schumacher and Janet D. Scheel

Phys. Rev. E 94, 043104 (2016) - Published 10 October, 2016

Geometric effects on electrocapillarity in nanochannels with an overlapped electric double layer

Jung A. Lee and In Seok Kang

Phys. Rev. E 94, 043105 (2016) - Published 10 October, 2016

Fingering instability and mixing of a blob in porous media

Satyajit Pramanik and Manoranjan Mishra

Phys. Rev. E 94, 043106 (2016) - Published 11 October, 2016

Testing the limits of the spatial Markov model for upscaling transport: The role of nonmonotonic effective velocity autocorrelations

Nicole L. Sund, Diogo Bolster, and David A. Benson

Phys. Rev. E 94, 043107 (2016) - Published 13 October, 2016

Heat and momentum transfer for magnetoconvection in a vertical external magnetic field

Till Zürner, Wenjun Liu, Dmitry Krasnov, and Jörg Schumacher

Phys. Rev. E 94, 043108 (2016) - Published 17 October, 2016

Effect of the energy-spectrum law on clustering patterns for inertial particles subjected to gravity in kinematic simulation

F. C. G. A. Nicolleau, M. Farhan, and A. F. Nowakowski

Phys. Rev. E 94, 043109 (2016) - Published 18 October, 2016

Comparison of the lattice Boltzmann equation and discrete unified gas-kinetic scheme methods for direct numerical simulation of decaying turbulent flows

Peng Wang, Lian-Ping Wang, and Zhaoli Guo

Phys. Rev. E 94, 043304 (2016) - Published 13 October, 2016

Polariton condensation threshold investigation through the numerical resolution of the generalized Gross-Pitaevskii equation

Hamis Gargoubi, Thierry Guillet, Sihem Jaziri, Jalloul Balti, and Brahim Guizal

Phys. Rev. E 94, 043310 (2016) - Published 18 October, 2016

Decoupled scheme based on the Hermite expansion to construct lattice Boltzmann models for the compressible Navier-Stokes equations with arbitrary specific heat ratio

Kainan Hu, Hongwu Zhang, and Shaojuan Geng

Phys. Rev. E 94, 043314 (2016) - Published 24 October, 2016

Simulation of dissolution in porous media in three dimensions with lattice Boltzmann, finite-volume, and surface-rescaling methods

F. Gray, J. Cen, and E. S. Boek

Phys. Rev. E 94, 043320 (2016) - Published 25 October, 2016

Adaptive molecular resolution approach in Hamiltonian form: An asymptotic analysis

Jinglong Zhu, Rupert Klein, and Luigi Delle Site

Phys. Rev. E 94, 043321 (2016) - Published 28 October, 2016

EDITORS' SUGGESTION

Monte Carlo method for critical systems in infinite volume: The planar Ising model

Victor Herdeiro and Benjamin Doyon

Phys. Rev. E 94, 043322 (2016) - Published 31 October, 2016

Renormalized multicanonical sampling in multiple dimensions

Yong Hwan Lee and David Yevick

Phys. Rev. E 94, 043323 (2016) - Published 31 October, 2016

COMMENTS

Comment on “Flow-induced arrest of spatiotemporal chaos and transition to a stationary pattern in the Gray-Scott model”

Igal Berenstein, Carsten Beta, and Yannick De Decker

Phys. Rev. E 94, 046201 (2016) - Published 7 October, 2016

Reply to “Comment on ‘Flow-induced arrest of spatiotemporal chaos and transition to a stationary pattern in the Gray-Scott model’ ”

Debojyoti Das

Phys. Rev. E 94, 046202 (2016) - Published 7 October, 2016