Volume 86, Issue 4

October 2012

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HIGHLIGHTED ARTICLES

FEATURED IN PHYSICS

RAPID COMMUNICATION

Quantum measurement and the first law of thermodynamics: The energy cost of measurement is the work value of the acquired information

Kurt Jacobs

Phys. Rev. E 86, 040106(R) (2012) - Published 25 October, 2012

RAPID COMMUNICATIONS

Statistical physics

RAPID COMMUNICATION

Logarithmic divergent thermal conductivity in two-dimensional nonlinear lattices

Lei Wang (王雷), Bambi Hu (胡斑比), and Baowen Li (李保文)

Phys. Rev. E 86, 040101(R) (2012) - Published 4 October, 2012

RAPID COMMUNICATION

Class of consistent fundamental-measure free energies for hard-sphere mixtures

Andrés Santos

Phys. Rev. E 86, 040102(R) (2012) - Published 5 October, 2012

RAPID COMMUNICATION

Exchange of stability as a function of system size in a nonequilibrium system

Sorin Tănase-Nicola and David K. Lubensky

Phys. Rev. E 86, 040103(R) (2012) - Published 10 October, 2012

RAPID COMMUNICATION

Compressing random microstructures via stochastic Wang tilings

Jan Novák, Anna Kučerová, and Jan Zeman

Phys. Rev. E 86, 040104(R) (2012) - Published 22 October, 2012

RAPID COMMUNICATION

Corrected finite-size scaling in percolation

Jiantong Li and Mikael Östling

Phys. Rev. E 86, 040105(R) (2012) - Published 24 October, 2012

FEATURED IN PHYSICS

RAPID COMMUNICATION

Quantum measurement and the first law of thermodynamics: The energy cost of measurement is the work value of the acquired information

Kurt Jacobs

Phys. Rev. E 86, 040106(R) (2012) - Published 25 October, 2012

Structured and complex fluids

RAPID COMMUNICATION

Tension of freely suspended fluid filaments

M. Morys, T. Trittel, A. Eremin, P. Murphy, and R. Stannarius

Phys. Rev. E 86, 040501(R) (2012) - Published 8 October, 2012

Liquid crystals

RAPID COMMUNICATION

Competition of elasticity and flexoelectricity for bistable alignment of nematic liquid crystals on patterned substrates

T. J. Atherton and J. H. Adler

Phys. Rev. E 86, 040701(R) (2012) - Published 18 October, 2012

Biological physics

RAPID COMMUNICATION

Minimal model for the inelastic mechanics of biopolymer networks and cells

Lars Wolff and Klaus Kroy

Phys. Rev. E 86, 040901(R) (2012) - Published 8 October, 2012

RAPID COMMUNICATION

Collective chemotactic dynamics in the presence of self-generated fluid flows

Enkeleida Lushi, Raymond E. Goldstein, and Michael J. Shelley

Phys. Rev. E 86, 040902(R) (2012) - Published 22 October, 2012

ARTICLES

Statistical physics

Bulk-mediated diffusion on a planar surface: Full solution

Aleksei V. Chechkin, Irwin M. Zaid, Michael A. Lomholt, Igor M. Sokolov, and Ralf Metzler

Phys. Rev. E 86, 041101 (2012) - Published 1 October, 2012

Crossover from Fermi-Pasta-Ulam to normal diffusive behavior in heat conduction through open anharmonic lattices

Dibyendu Roy

Phys. Rev. E 86, 041102 (2012) - Published 1 October, 2012

Symmetric exclusion process with a localized source

P. L. Krapivsky

Phys. Rev. E 86, 041103 (2012) - Published 1 October, 2012

Robustness against extinction by stochastic sex determination in small populations

David M. Schneider, Eduardo do Carmo, Yaneer Bar-Yam, and Marcus A. M. de Aguiar

Phys. Rev. E 86, 041104 (2012) - Published 2 October, 2012

Universal anisotropic finite-size critical behavior of the two-dimensional Ising model on a strip and of $d$ -dimensional models on films

Boris Kastening

Phys. Rev. E 86, 041105 (2012) - Published 2 October, 2012

High-efficiency dielectrophoretic ratchet

Wijnand Chr. Germs, Erik M. Roeling, Leo J. van IJzendoorn, Barry Smalbrugge, Tjibbe de Vries, Erik Jan Geluk, René A. J. Janssen, and Martijn Kemerink

Phys. Rev. E 86, 041106 (2012) - Published 2 October, 2012

Deep spin-glass hysteresis-area collapse and scaling in the three-dimensional $\pm J$ Ising model

Ozan S. Sarıyer, Alkan Kabakçıoğlu, and A. Nihat Berker

Phys. Rev. E 86, 041107 (2012) - Published 5 October, 2012

Role of the nature of noise in the thermal conductance of mechanical systems

Welles A. M. Morgado and Sílvio M. Duarte Queirós

Phys. Rev. E 86, 041108 (2012) - Published 8 October, 2012

Extreme-value distributions and renormalization group

Iván Calvo, Juan C. Cuchí, J. G. Esteve, and Fernando Falceto

Phys. Rev. E 86, 041109 (2012) - Published 8 October, 2012

Rigorous elimination of fast stochastic variables from the linear noise approximation using projection operators

Philipp Thomas, Ramon Grima, and Arthur V. Straube

Phys. Rev. E 86, 041110 (2012) - Published 8 October, 2012

Kink localization under asymmetric double-well potentials

Emilio N. M. Cirillo, Nicoletta Ianiro, and Giulio Sciarra

Phys. Rev. E 86, 041111 (2012) - Published 8 October, 2012

Logic gates for entropic transport

Moupriya Das, Debasish Mondal, and Deb Shankar Ray

Phys. Rev. E 86, 041112 (2012) - Published 9 October, 2012

Reaction-diffusion processes with nonlinear diffusion

P. L. Krapivsky

Phys. Rev. E 86, 041113 (2012) - Published 9 October, 2012

Markov chain Monte Carlo approach to parameter estimation in the FitzHugh-Nagumo model

Anders Chr. Jensen, Susanne Ditlevsen, Mathieu Kessler, and Omiros Papaspiliopoulos

Phys. Rev. E 86, 041114 (2012) - Published 10 October, 2012

Weighted Kolmogorov-Smirnov test: Accounting for the tails

Rémy Chicheportiche and Jean-Philippe Bouchaud

Phys. Rev. E 86, 041115 (2012) - Published 10 October, 2012

First-passage and escape problems in the Feller process

Jaume Masoliver and Josep Perelló

Phys. Rev. E 86, 041116 (2012) - Published 10 October, 2012

Random perfect lattices and the sphere packing problem

A. Andreanov and A. Scardicchio

Phys. Rev. E 86, 041117 (2012) - Published 11 October, 2012

Effective-average-action-based approach to correlation functions at finite momenta

N. Hasselmann

Phys. Rev. E 86, 041118 (2012) - Published 11 October, 2012

Resonant behavior of trapped Brownian particles in an oscillatory shear flow

Hanno Kählert and Hartmut Löwen

Phys. Rev. E 86, 041119 (2012) - Published 11 October, 2012

Multiscale community geometry in a network and its application

Chen Chen and Hsieh Fushing

Phys. Rev. E 86, 041120 (2012) - Published 12 October, 2012

Fortuin-Kasteleyn and damage-spreading transitions in random-bond Ising lattices

P. H. Lundow and I. A. Campbell

Phys. Rev. E 86, 041121 (2012) - Published 12 October, 2012

Noise-induced vortex reversal of self-propelled particles

Hanshuang Chen and Zhonghuai Hou

Phys. Rev. E 86, 041122 (2012) - Published 12 October, 2012

Critical phenomena of the majority voter model in a three-dimensional cubic lattice

Ana L. Acuña-Lara and Francisco Sastre

Phys. Rev. E 86, 041123 (2012) - Published 15 October, 2012

Self-assembled clusters of spheres related to spherical codes

Carolyn L. Phillips, Eric Jankowski, Michelle Marval, and Sharon C. Glotzer

Phys. Rev. E 86, 041124 (2012) - Published 15 October, 2012

Epidemic thresholds of the susceptible-infected-susceptible model on networks: A comparison of numerical and theoretical results

Silvio C. Ferreira, Claudio Castellano, and Romualdo Pastor-Satorras

Phys. Rev. E 86, 041125 (2012) - Published 15 October, 2012

Microcanonical origin of the maximum entropy principle for open systems

Julian Lee and Steve Pressé

Phys. Rev. E 86, 041126 (2012) - Published 15 October, 2012

Current-activity versus local-current fluctuations in a driven flow with exclusion

S. L. A. de Queiroz

Phys. Rev. E 86, 041127 (2012) - Published 15 October, 2012

Phase transition for cutting-plane approach to vertex-cover problem

Timo Dewenter and Alexander K. Hartmann

Phys. Rev. E 86, 041128 (2012) - Published 15 October, 2012

Energy transport in weakly nonlinear wave systems with narrow frequency band excitation

Elena Kartashova

Phys. Rev. E 86, 041129 (2012) - Published 17 October, 2012

Comparison of free-energy estimators and their dependence on dissipated work

Seongjin Kim, Yong Woon Kim, Peter Talkner, and Juyeon Yi

Phys. Rev. E 86, 041130 (2012) - Published 17 October, 2012

Percolation critical polynomial as a graph invariant

Christian R. Scullard

Phys. Rev. E 86, 041131 (2012) - Published 18 October, 2012

Universality of modulation length and time exponents

Saurish Chakrabarty, Vladimir Dobrosavljević, Alexander Seidel, and Zohar Nussinov

Phys. Rev. E 86, 041132 (2012) - Published 18 October, 2012

Usefulness of an equal-probability assumption for out-of-equilibrium states: A master equation approach

Tomoaki Nogawa, Nobuyasu Ito, and Hiroshi Watanabe

Phys. Rev. E 86, 041133 (2012) - Published 18 October, 2012

Langevin description of superdiffusive Lévy processes

S. Eule, V. Zaburdaev, R. Friedrich, and T. Geisel

Phys. Rev. E 86, 041134 (2012) - Published 19 October, 2012

Exact mean exit time for surface-mediated diffusion

J.-F. Rupprecht, O. Bénichou, D. S. Grebenkov, and R. Voituriez

Phys. Rev. E 86, 041135 (2012) - Published 19 October, 2012

Geometry of the energy landscape of the self-gravitating ring

Bernardo Monechi and Lapo Casetti

Phys. Rev. E 86, 041136 (2012) - Published 19 October, 2012

Weak subordination breaking for the quenched trap model

S. Burov and E. Barkai

Phys. Rev. E 86, 041137 (2012) - Published 19 October, 2012

Critical behavior of a tumor growth model: Directed percolation with a mean-field flavor

Adam Lipowski, António Luis Ferreira, and Jacek Wendykier

Phys. Rev. E 86, 041138 (2012) - Published 22 October, 2012

Microscopic meaning of grand potential resulting from combinatorial approach to a general system of particles

Agata Fronczak

Phys. Rev. E 86, 041139 (2012) - Published 22 October, 2012

Poissonian steady states: From stationary densities to stationary intensities

Iddo Eliazar

Phys. Rev. E 86, 041140 (2012) - Published 22 October, 2012

Families of tessellations of space by elementary polyhedra via retessellations of face-centered-cubic and related tilings

Ruggero Gabbrielli, Yang Jiao, and Salvatore Torquato

Phys. Rev. E 86, 041141 (2012) - Published 22 October, 2012

Phase-locking-level statistics of coupled random fiber lasers

Moti Fridman, Rami Pugatch, Micha Nixon, Asher A. Friesem, and Nir Davidson

Phys. Rev. E 86, 041142 (2012) - Published 23 October, 2012

Nanosize pattern formation in overdamped stochastic reaction-diffusion systems with interacting adsorbate

Vasyl O. Kharchenko and Dmitrii O. Kharchenko

Phys. Rev. E 86, 041143 (2012) - Published 24 October, 2012

Efficiency at maximum power for classical particle transport

Christian Van den Broeck and Katja Lindenberg

Phys. Rev. E 86, 041144 (2012) - Published 24 October, 2012

Linear response at criticality

Adam Svenkeson, Mauro Bologna, and Paolo Grigolini

Phys. Rev. E 86, 041145 (2012) - Published 24 October, 2012

Cyclotron-Bloch dynamics of a quantum particle in a two-dimensional lattice. II. Arbitrary electric field directions

Andrey R. Kolovsky, Ilya Chesnokov, and Giorgio Mantica

Phys. Rev. E 86, 041146 (2012) - Published 25 October, 2012

Efimov effect of triple-stranded DNA: Real-space renormalization group and zeros of the partition function

Jaya Maji and Somendra M. Bhattacharjee

Phys. Rev. E 86, 041147 (2012) - Published 25 October, 2012

Geometry of thermodynamic control

Patrick R. Zulkowski, David A. Sivak, Gavin E. Crooks, and Michael R. DeWeese

Phys. Rev. E 86, 041148 (2012) - Published 26 October, 2012

Finite-size behavior of the critical Ising model on a rectangle with free boundaries

Xintian Wu, Nickolay Izmailian, and Wenan Guo

Phys. Rev. E 86, 041149 (2012) - Published 26 October, 2012

Tuning spreading and avalanche-size exponents in directed percolation with modified activation probabilities

François Landes, Alberto Rosso, and E. A. Jagla

Phys. Rev. E 86, 041150 (2012) - Published 26 October, 2012

Short-time growth of a Kardar-Parisi-Zhang interface with flat initial conditions

Thomas Gueudré, Pierre Le Doussal, Alberto Rosso, Adrien Henry, and Pasquale Calabrese

Phys. Rev. E 86, 041151 (2012) - Published 31 October, 2012

Granular materials

Nonlinear effects of particle shape angularity in sheared granular media

Emilien Azéma, Nicolas Estrada, and Farhang Radjaï

Phys. Rev. E 86, 041301 (2012) - Published 1 October, 2012

Uniform shock waves in disordered granular matter

Leopoldo R. Gómez, Ari M. Turner, and Vincenzo Vitelli

Phys. Rev. E 86, 041302 (2012) - Published 8 October, 2012

Structural relaxation in dense liquids composed of anisotropic particles

Tianqi Shen, Carl Schreck, Bulbul Chakraborty, Denise E. Freed, and Corey S. O'Hern

Phys. Rev. E 86, 041303 (2012) - Published 10 October, 2012

Shape and dynamics of seepage erosion in a horizontal granular bed

Michael Berhanu, Alexander Petroff, Olivier Devauchelle, Arshad Kudrolli, and Daniel H. Rothman

Phys. Rev. E 86, 041304 (2012) - Published 10 October, 2012

Amplitude-dependent phononic processes in a diatomic granular chain in the weakly nonlinear regime

Jérémy Cabaret, Vincent Tournat, and Philippe Béquin

Phys. Rev. E 86, 041305 (2012) - Published 12 October, 2012

Influence of network topology on sound propagation in granular materials

Danielle S. Bassett, Eli T. Owens, Karen E. Daniels, and Mason A. Porter

Phys. Rev. E 86, 041306 (2012) - Published 16 October, 2012

Friction and the oscillatory motion of granular flows

L. Staron

Phys. Rev. E 86, 041307 (2012) - Published 17 October, 2012

Simulation of granular jets: Is granular flow really a perfect fluid?

Tomohiko G. Sano and Hisao Hayakawa

Phys. Rev. E 86, 041308 (2012) - Published 22 October, 2012

Yield loci for an anisotropic granular assembly

Luigi La Ragione and Luc Oger

Phys. Rev. E 86, 041309 (2012) - Published 22 October, 2012

Colloidal dispersions, suspensions, and aggregates

Aging of rotational diffusion in colloidal gels and glasses

S. Jabbari-Farouji, G. H. Wegdam, and Daniel Bonn

Phys. Rev. E 86, 041401 (2012) - Published 5 October, 2012

Long-range hydrodynamic correlations in quasi-one-dimensional circular and straight geometries

Ekaterina Kosheleva, Brian Leahy, Haim Diamant, Binhua Lin, and Stuart A. Rice

Phys. Rev. E 86, 041402 (2012) - Published 31 October, 2012

Structured and complex fluids

Time dependence of the segmental relaxation time of poly(vinyl acetate)-silica nanocomposites

Virginie M. Boucher, Daniele Cangialosi, Angel Alegría, and Juan Colmenero

Phys. Rev. E 86, 041501 (2012) - Published 1 October, 2012

Pressure coefficient of the glass transition temperature in the thermodynamic scaling regime

K. Koperwas, A. Grzybowski, K. Grzybowska, Z. Wojnarowska, J. Pionteck, A. P. Sokolov, and M. Paluch

Phys. Rev. E 86, 041502 (2012) - Published 8 October, 2012

Numerical and experimental study of a rotating magnetic particle chain in a viscous fluid

Y. Gao, M. A. Hulsen, T. G. Kang, and J. M. J. den Toonder

Phys. Rev. E 86, 041503 (2012) - Published 9 October, 2012

Relationship between bond-breakage correlations and four-point correlations in heterogeneous glassy dynamics: Configuration changes and vibration modes

Hayato Shiba, Takeshi Kawasaki, and Akira Onuki

Phys. Rev. E 86, 041504 (2012) - Published 10 October, 2012

Using mutual information to measure order in model glass formers

Andrew J. Dunleavy, Karoline Wiesner, and C. Patrick Royall

Phys. Rev. E 86, 041505 (2012) - Published 18 October, 2012

Effect of attractions on correlation length scales in a glass-forming liquid

Wen-Sheng Xu, Zhao-Yan Sun, and Li-Jia An

Phys. Rev. E 86, 041506 (2012) - Published 19 October, 2012

From boiling point to glass transition temperature: Transport coefficients in molecular liquids follow three-parameter scaling

B. Schmidtke, N. Petzold, R. Kahlau, M. Hofmann, and E. A. Rössler

Phys. Rev. E 86, 041507 (2012) - Published 19 October, 2012

Correlation effect for dynamics in silica liquid

P. K. Hung, N. T. T. Ha, and N. V. Hong

Phys. Rev. E 86, 041508 (2012) - Published 25 October, 2012

Films, interfaces, and crystal growth

Nonmonotonic dynamics in Lifshitz-Slyozov-Wagner theory: Ostwald ripening in nanoparticle catalysts

Steven G. Rinaldo, Wendy Lee, Jürgen Stumper, and Michael Eikerling

Phys. Rev. E 86, 041601 (2012) - Published 5 October, 2012

Electric-field-induced interfacial instabilities of a soft elastic membrane confined between viscous layers

Mohar Dey, Dipankar Bandyopadhyay, Ashutosh Sharma, Shizhi Qian, and Sang Woo Joo

Phys. Rev. E 86, 041602 (2012) - Published 10 October, 2012

Quantitative phase-field modeling for boiling phenomena

Arnoldo Badillo

Phys. Rev. E 86, 041603 (2012) - Published 16 October, 2012

Nucleation pathway of core-shell composite nucleus in size and composition space and in component space

Masao Iwamatsu

Phys. Rev. E 86, 041604 (2012) - Published 31 October, 2012

Liquid crystals

Influence of shear flow on the linear response of a nematic liquid crystal to external electric fields

Hiroshi Orihara, Fan Yang, Yuta Takigami, Yoshinori Takikawa, and Yang Ho Na

Phys. Rev. E 86, 041701 (2012) - Published 4 October, 2012

Elastic and hydrodynamic torques on a colloidal disk within a nematic liquid crystal

Joel B. Rovner, Dan S. Borgnia, Daniel H. Reich, and Robert L. Leheny

Phys. Rev. E 86, 041702 (2012) - Published 5 October, 2012

Understanding the distinctive elastic constants in an oxadiazole bent-core nematic liquid crystal

S. Kaur, J. Addis, C. Greco, A. Ferrarini, V. Görtz, J. W. Goodby, and H. F. Gleeson

Phys. Rev. E 86, 041703 (2012) - Published 5 October, 2012

Stability of cholesteric blue phases in the presence of a guest component

Jun-ichi Fukuda (福田順一)

Phys. Rev. E 86, 041704 (2012) - Published 10 October, 2012

Critical behavior of a nonpolar smectogen from high-resolution birefringence measurements

Selen Erkan, Mehmetcan Çetinkaya, Sevtap Yildiz, and Haluk Özbek

Phys. Rev. E 86, 041705 (2012) - Published 11 October, 2012

Generalized Berreman's model of the elastic surface free energy of a nematic liquid crystal on a sawtoothed substrate

O. A. Rojas-Gómez and J. M. Romero-Enrique

Phys. Rev. E 86, 041706 (2012) - Published 26 October, 2012

Competing alignments of nematic liquid crystals on square-patterned substrates

C. Anquetil-Deck, D. J. Cleaver, and T. J. Atherton

Phys. Rev. E 86, 041707 (2012) - Published 31 October, 2012

Polymers

Molecular dynamics simulation of rupture in glassy polymer bridges within filler aggregates

Vladimir A. Froltsov, Manfred Klüppel, and Guido Raos

Phys. Rev. E 86, 041801 (2012) - Published 5 October, 2012

Orientational correlations in confined DNA

E. Werner, F. Persson, F. Westerlund, J. O. Tegenfeldt, and B. Mehlig

Phys. Rev. E 86, 041802 (2012) - Published 11 October, 2012

Relaxation dynamics of scale-free polymer networks

M. Galiceanu

Phys. Rev. E 86, 041803 (2012) - Published 17 October, 2012

Colloids and polymers in random colloidal matrices: Demixing under good-solvent conditions

Mario Alberto Annunziata and Andrea Pelissetto

Phys. Rev. E 86, 041804 (2012) - Published 22 October, 2012

Density functional theory for inhomogeneous ring polymeric fluids

Jian Jiang, Xiaofei Xu, and Dapeng Cao

Phys. Rev. E 86, 041805 (2012) - Published 24 October, 2012

Biological physics

Framework to study dynamic dependencies in networks of interacting processes

Daniel Chicharro and Anders Ledberg

Phys. Rev. E 86, 041901 (2012) - Published 3 October, 2012

Natural stiffening increases flaw tolerance of biological fibers

Tristan Giesa, Nicola M. Pugno, and Markus J. Buehler

Phys. Rev. E 86, 041902 (2012) - Published 8 October, 2012

Entrainment of the suprachiasmatic nucleus network by a light-dark cycle

Jinshan Xu, Changgui Gu, Alain Pumir, Nicolas Garnier, and Zonghua Liu

Phys. Rev. E 86, 041903 (2012) - Published 8 October, 2012

Structure of a micropipette-aspirated vesicle determined from the bending-energy model

Jeff Z. Y. Chen

Phys. Rev. E 86, 041904 (2012) - Published 8 October, 2012

DNA as a one-dimensional chiral material. II. Dynamics of the structural transition between B form and Z form

Teruaki Okushima and Hiroshi Kuratsuji

Phys. Rev. E 86, 041905 (2012) - Published 8 October, 2012

Hysteresis and nonequilibrium work theorem for DNA unzipping

Rajeev Kapri

Phys. Rev. E 86, 041906 (2012) - Published 9 October, 2012

Purely competitive evolutionary dynamics for games

Carl Veller and Vinesh Rajpaul

Phys. Rev. E 86, 041907 (2012) - Published 10 October, 2012

Front acceleration by dynamic selection in Fisher population waves

O. Bénichou, V. Calvez, N. Meunier, and R. Voituriez

Phys. Rev. E 86, 041908 (2012) - Published 10 October, 2012

Experimental study of the effect of disorder on DNA dynamics in post arrays during electrophoresis

Daniel W. Olson and Kevin D. Dorfman

Phys. Rev. E 86, 041909 (2012) - Published 12 October, 2012

Molecular simulations of the fluctuating conformational dynamics of intrinsically disordered proteins

W. Wendell Smith, Carl F. Schreck, Nabeem Hashem, Sherwin Soltani, Abhinav Nath, Elizabeth Rhoades, and Corey S. O’Hern

Phys. Rev. E 86, 041910 (2012) - Published 12 October, 2012

Spatial propagation of excitonic coherence enables ratcheted energy transfer

Stephan Hoyer, Akihito Ishizaki, and K. Birgitta Whaley

Phys. Rev. E 86, 041911 (2012) - Published 15 October, 2012

Fractional process as a unified model for subdiffusive dynamics in experimental data

Krzysztof Burnecki, Grzegorz Sikora, and Aleksander Weron

Phys. Rev. E 86, 041912 (2012) - Published 17 October, 2012

Chemically controlled unfolding of a RNA-like polymer model

C. Buzano and M. Pretti

Phys. Rev. E 86, 041913 (2012) - Published 22 October, 2012

Control of traveling-wave oscillations and bifurcation behavior in central pattern generators

Alexandra S. Landsman and Jean-Jacques Slotine

Phys. Rev. E 86, 041914 (2012) - Published 23 October, 2012

Cracking phase diagram for the dynamics of an enzyme

Hao Qu, Jonathan Landy, and Giovanni Zocchi

Phys. Rev. E 86, 041915 (2012) - Published 24 October, 2012

Velocity plateaus in traveling-wave electrophoresis

Robert Correll and Boyd F. Edwards

Phys. Rev. E 86, 041916 (2012) - Published 25 October, 2012

Self-arrangement of cellular circadian rhythms through phase-resetting in plant roots

Hirokazu Fukuda, Kazuya Ukai, and Tokitaka Oyama

Phys. Rev. E 86, 041917 (2012) - Published 26 October, 2012

Dynamics and length distribution of microtubules under force and confinement

Björn Zelinski, Nina Müller, and Jan Kierfeld

Phys. Rev. E 86, 041918 (2012) - Published 31 October, 2012

Influence of homology and node age on the growth of protein-protein interaction networks

Arianna Bottinelli, Bruno Bassetti, Marco Cosentino Lagomarsino, and Marco Gherardi

Phys. Rev. E 86, 041919 (2012) - Published 31 October, 2012

Influence of decoys on the noise and dynamics of gene expression

Anat Burger, Aleksandra M. Walczak, and Peter G. Wolynes

Phys. Rev. E 86, 041920 (2012) - Published 31 October, 2012

BRIEF REPORTS

Statistical physics

Alzheimer random walk model: Two previously overlooked diffusion regimes

J. C. Cressoni, G. M. Viswanathan, A. S. Ferreira, and M. A. A. da Silva

Phys. Rev. E 86, 042101 (2012) - Published 2 October, 2012

One-parameter extension of the Doi-Peliti formalism and its relation with orthogonal polynomials

Jun Ohkubo

Phys. Rev. E 86, 042102 (2012) - Published 23 October, 2012

Structured and complex fluids

$[N] p T$ ensemble and finite-size-scaling study of the critical isostructural transition in the generalized exponential model of index 4

Kai Zhang (张凯) and Patrick Charbonneau

Phys. Rev. E 86, 042501 (2012) - Published 15 October, 2012

Liquid crystals

Universality of the nematic mesophase

D. S. Simeão and M. Simões

Phys. Rev. E 86, 042701 (2012) - Published 2 October, 2012

Biological physics

Assessment of radiation damage in single-shot coherent diffraction of DNA molecules by an extreme-ultraviolet free-electron laser

Jaehyun Park, Daewoong Nam, Yoshiki Kohmura, Mitsuru Nagasono, Yongmoon Jeon, Jong-Bong Lee, Tetsuya Ishikawa, and Changyong Song

Phys. Rev. E 86, 042901 (2012) - Published 25 October, 2012

COMMENTS

Comment on “Maximum or minimum entropy production? How to select a necessary criterion of stability for a dissipative fluid or plasma”

Giorgio Sonnino, Mustapha Tlidi, and Jarah Evslin

Phys. Rev. E 86, 043101 (2012) - Published 8 October, 2012

Reply to “Comment on ‘Maximum or minimum entropy production? How to select a necessary criterion of stability for a dissipative fluid or plasma’”

A. Di Vita

Phys. Rev. E 86, 043102 (2012) - Published 8 October, 2012

RAPID COMMUNICATIONS

Interdisciplinary physics

RAPID COMMUNICATION

Optimizing cooperation on complex networks in the presence of failure

Yu-Zhong Chen and Ying-Cheng Lai

Phys. Rev. E 86, 045101(R) (2012) - Published 11 October, 2012

RAPID COMMUNICATION

Analytical solution of metapopulation dynamics in a stochastic environment

Satoru Morita and Jin Yoshimura

Phys. Rev. E 86, 045102(R) (2012) - Published 11 October, 2012

RAPID COMMUNICATION

Predicted formation of localized superlattices in spatially distributed reaction-diffusion solutions

M. Tlidi, G. Sonnino, and M. Bachir

Phys. Rev. E 86, 045103(R) (2012) - Published 16 October, 2012

Chaos and pattern formation

RAPID COMMUNICATION

Finite-time statistics of scalar diffusion in Lagrangian coherent structures

Wenbo Tang and Phillip Walker

Phys. Rev. E 86, 045201(R) (2012) - Published 11 October, 2012

RAPID COMMUNICATION

Two- and three-dimensional standing waves in a reaction-diffusion system

Tamás Bánsági, Jr., Vladimir K. Vanag, and Irving R. Epstein

Phys. Rev. E 86, 045202(R) (2012) - Published 15 October, 2012

Fluid dynamics

RAPID COMMUNICATION

Experimental observation of von Kármán vortices during drop impact

A. A. Castrejón-Pita, J. R. Castrejón-Pita, and I. M. Hutchings

Phys. Rev. E 86, 045301(R) (2012) - Published 10 October, 2012

RAPID COMMUNICATION

Time scales of turbulent relative dispersion

Rehab Bitane, Holger Homann, and Jérémie Bec

Phys. Rev. E 86, 045302(R) (2012) - Published 31 October, 2012

Plasma physics

RAPID COMMUNICATION

Nonlinear dynamics of beta-induced Alfvén eigenmode driven by energetic particles

X. Wang, S. Briguglio, L. Chen, C. Di Troia, G. Fogaccia, G. Vlad, and F. Zonca

Phys. Rev. E 86, 045401(R) (2012) - Published 4 October, 2012

RAPID COMMUNICATION

Observation of multifractal intermittent dust-acoustic-wave turbulence

Ya-Yi Tsai, Mei-Chu Chang, and Lin I

Phys. Rev. E 86, 045402(R) (2012) - Published 9 October, 2012

Computational physics

RAPID COMMUNICATION

Spectral solution of delayed random walks

H. S. Bhat and N. Kumar

Phys. Rev. E 86, 045701(R) (2012) - Published 17 October, 2012

ARTICLES

Interdisciplinary physics

Coupled intermittent maps modeling the statistics of genomic sequences: A network approach

Astero Provata and Christian Beck

Phys. Rev. E 86, 046101 (2012) - Published 1 October, 2012

Generalized master equations for non-Poisson dynamics on networks

Till Hoffmann, Mason A. Porter, and Renaud Lambiotte

Phys. Rev. E 86, 046102 (2012) - Published 8 October, 2012

Diffusion, annihilation, and chemical reactions in complex networks with spatial constraints

Thorsten Emmerich, Armin Bunde, and Shlomo Havlin

Phys. Rev. E 86, 046103 (2012) - Published 10 October, 2012

Sampling properties of directed networks

S.-W. Son, C. Christensen, G. Bizhani, D. V. Foster, P. Grassberger, and M. Paczuski

Phys. Rev. E 86, 046104 (2012) - Published 10 October, 2012

Stochastic Turing patterns on a network

Malbor Asslani, Francesca Di Patti, and Duccio Fanelli

Phys. Rev. E 86, 046105 (2012) - Published 12 October, 2012

Inferring topologies of complex networks with hidden variables

Xiaoqun Wu, Weihan Wang, and Wei Xing Zheng

Phys. Rev. E 86, 046106 (2012) - Published 12 October, 2012

Earthquake networks based on similar activity patterns

Joel N. Tenenbaum, Shlomo Havlin, and H. Eugene Stanley

Phys. Rev. E 86, 046107 (2012) - Published 15 October, 2012

Natural discretization of pedestrian movement in continuous space

Michael J. Seitz and Gerta Köster

Phys. Rev. E 86, 046108 (2012) - Published 15 October, 2012

Connections between the Sznajd model with general confidence rules and graph theory

André M. Timpanaro and Carmen P. C. Prado

Phys. Rev. E 86, 046109 (2012) - Published 19 October, 2012

Search for the optimality signature of river network development

Kyungrock Paik

Phys. Rev. E 86, 046110 (2012) - Published 26 October, 2012

Properties of pedestrians walking in line. II. Stepping behavior

Asja Jelić, Cécile Appert-Rolland, Samuel Lemercier, and Julien Pettré

Phys. Rev. E 86, 046111 (2012) - Published 31 October, 2012

Chaos and pattern formation

Influence of carrier lifetimes on the dynamical behavior of quantum-dot lasers subject to optical feedback

Björn Globisch, Christian Otto, Eckehard Schöll, and Kathy Lüdge

Phys. Rev. E 86, 046201 (2012) - Published 3 October, 2012

Eigenvector dynamics: General theory and some applications

Romain Allez and Jean-Philippe Bouchaud

Phys. Rev. E 86, 046202 (2012) - Published 3 October, 2012

Impact of chaos and Brownian diffusion on irreversibility in Stokes flows

P. Sundararajan, J. D. Kirtland, D. L. Koch, and A. D. Stroock

Phys. Rev. E 86, 046203 (2012) - Published 4 October, 2012

Impedance and power fluctuations in linear chains of coupled wave chaotic cavities

Gabriele Gradoni, Thomas M. Antonsen,, Jr., and Edward Ott

Phys. Rev. E 86, 046204 (2012) - Published 5 October, 2012

Polynomial search and global modeling: Two algorithms for modeling chaos

S. Mangiarotti, R. Coudret, L. Drapeau, and L. Jarlan

Phys. Rev. E 86, 046205 (2012) - Published 8 October, 2012

Nonrandomness, nonlinear dependence, and nonstationarity of electroencephalographic recordings from epilepsy patients

Ralph G. Andrzejak, Kaspar Schindler, and Christian Rummel

Phys. Rev. E 86, 046206 (2012) - Published 12 October, 2012

Synchronization and quorum sensing in an ensemble of indirectly coupled chaotic oscillators

Bing-Wei Li, Chenbo Fu, Hong Zhang, and Xingang Wang

Phys. Rev. E 86, 046207 (2012) - Published 15 October, 2012

Dynamics of a suspended nanowire driven by an ac Josephson current in an inhomogeneous magnetic field

Milton E. Peña-Aza

Phys. Rev. E 86, 046208 (2012) - Published 15 October, 2012

Effects of noise on interference phenomena in the presence of subharmonic Shapiro steps

Petar Mali, Jasmina Tekić, Zoran Ivić, and Milan Pantić

Phys. Rev. E 86, 046209 (2012) - Published 17 October, 2012

Distinguishing chaotic and stochastic dynamics from time series by using a multiscale symbolic approach

L. Zunino, M. C. Soriano, and O. A. Rosso

Phys. Rev. E 86, 046210 (2012) - Published 17 October, 2012

Pulse propagation and failure in the discrete FitzHugh-Nagumo model subject to high-frequency stimulation

Irmantas Ratas and Kestutis Pyragas

Phys. Rev. E 86, 046211 (2012) - Published 18 October, 2012

Kuramoto model with time-varying parameters

Spase Petkoski and Aneta Stefanovska

Phys. Rev. E 86, 046212 (2012) - Published 23 October, 2012

Experimental time-delayed feedback control with variable and distributed delays

Thomas Jüngling, Aleksandar Gjurchinovski, and Viktor Urumov

Phys. Rev. E 86, 046213 (2012) - Published 24 October, 2012

Spectral element method and the delayed feedback control of chaos

Dennis J. Tweten and Brian P. Mann

Phys. Rev. E 86, 046214 (2012) - Published 31 October, 2012

Fluid dynamics

Ferrofilm in a magnetic field

Randy Back and J. Regan Beckham

Phys. Rev. E 86, 046301 (2012) - Published 1 October, 2012

Fractal space-scale unfolding mechanism for energy-efficient turbulent mixing

S. Laizet and J. C. Vassilicos

Phys. Rev. E 86, 046302 (2012) - Published 1 October, 2012

Calculation of effective slip on rough chemically heterogeneous surfaces using a homogenization approach

Nat J. Lund, Xingyou Philip Zhang, Keoni Mahelona, and Shaun C. Hendy

Phys. Rev. E 86, 046303 (2012) - Published 2 October, 2012

Maximum drag reduction simulation using rodlike polymers

J. J. J. Gillissen

Phys. Rev. E 86, 046304 (2012) - Published 5 October, 2012

Shear viscosity of dilute suspensions of ellipsoidal particles with a lattice Boltzmann method

Haibo Huang, YanFeng Wu, and Xiyun Lu

Phys. Rev. E 86, 046305 (2012) - Published 8 October, 2012

Numerical study on the permeability in a tensorial form for laminar flow in anisotropic porous media

S. A. Galindo-Torres, A. Scheuermann, and L. Li

Phys. Rev. E 86, 046306 (2012) - Published 10 October, 2012

Model for propagation speed in turbulent channel flows

J. Pei, J. Chen, Z.-S. She, and F. Hussain

Phys. Rev. E 86, 046307 (2012) - Published 10 October, 2012

Particle and particle pair dispersion in turbulence modeled with spatially and temporally correlated stochastic processes

Thomas Burgener, Dirk Kadau, and Hans J. Herrmann

Phys. Rev. E 86, 046308 (2012) - Published 10 October, 2012

Waves and instability in a one-dimensional microfluidic array

Bin Liu, J. Goree, and Yan Feng

Phys. Rev. E 86, 046309 (2012) - Published 11 October, 2012

Direct numerical simulation of electroconvective instability and hysteretic current-voltage response of a permselective membrane

Van Sang Pham, Zirui Li, Kian Meng Lim, Jacob K. White, and Jongyoon Han

Phys. Rev. E 86, 046310 (2012) - Published 11 October, 2012

Nonlinear wave evolution equation for critical layers

P. Caillol and R. Grimshaw

Phys. Rev. E 86, 046311 (2012) - Published 12 October, 2012

Viscoelastic convection: Few-modes model and numerical simulations of field equations for Maxwellian fluids

M. Salm and M. Lücke

Phys. Rev. E 86, 046312 (2012) - Published 15 October, 2012

Visualization and quantification of two-phase flow in transparent miniature packed beds

Peixi Zhu and Kyriakos D. Papadopoulos

Phys. Rev. E 86, 046313 (2012) - Published 16 October, 2012

Re-examining Archie's law: Conductance description by tortuosity and constriction

Carl Fredrik Berg

Phys. Rev. E 86, 046314 (2012) - Published 17 October, 2012

Energy partition at the collapse of spherical cavitation bubbles

M. Tinguely, D. Obreschkow, P. Kobel, N. Dorsaz, A. de Bosset, and M. Farhat

Phys. Rev. E 86, 046315 (2012) - Published 17 October, 2012

Symmetry-breaking Hopf bifurcations to 1-, 2-, and 3-tori in small-aspect-ratio counterrotating Taylor-Couette flow

S. Altmeyer, Y. Do, F. Marques, and J. M. Lopez

Phys. Rev. E 86, 046316 (2012) - Published 18 October, 2012

Self-consistent simulations of a von Kármán type dynamo in a spherical domain with metallic walls

Céline Guervilly and Nicholas H. Brummell

Phys. Rev. E 86, 046317 (2012) - Published 19 October, 2012

Molecular tagging velocimetry in turbulence using biacetyl

M. Mirzaei, N. J. Dam, and W. van de Water

Phys. Rev. E 86, 046318 (2012) - Published 19 October, 2012

Competition between Dukhin's and Rubinstein's electrokinetic modes

H.-C. Chang, E. A. Demekhin, and V. S. Shelistov

Phys. Rev. E 86, 046319 (2012) - Published 19 October, 2012

Local flow structure of turbulence in three, four, and five dimensions

T. Yamamoto, H. Shimizu, T. Inoshita, T. Nakano, and T. Gotoh

Phys. Rev. E 86, 046320 (2012) - Published 22 October, 2012

Particles at fluid-fluid interfaces: A new Navier-Stokes-Cahn-Hilliard surface- phase-field-crystal model

Sebastian Aland, John Lowengrub, and Axel Voigt

Phys. Rev. E 86, 046321 (2012) - Published 25 October, 2012

Variational scheme towards an optimal lifting drive in fluid adhesion

Eduardo O. Dias and José A. Miranda

Phys. Rev. E 86, 046322 (2012) - Published 26 October, 2012

Pattern formation of Rayleigh-Bénard convection of cold water near its density maximum in a vertical cylindrical container

You-Rong Li, Yu-Qing Ouyang, and Yu-Peng Hu

Phys. Rev. E 86, 046323 (2012) - Published 31 October, 2012

Plasma physics

Kinetics of the melting front in two-dimensional plasma crystals: Complementary analysis with the particle image and particle tracking velocimetries

J. D. Williams, E. Thomas, Jr., L. Couëdel, A. V. Ivlev, S. K. Zhdanov, V. Nosenko, H. M. Thomas, and G. E. Morfill

Phys. Rev. E 86, 046401 (2012) - Published 11 October, 2012

Nonlinear dynamics of large-amplitude dust acoustic shocks and solitary pulses in dusty plasmas

P. K. Shukla and B. Eliasson

Phys. Rev. E 86, 046402 (2012) - Published 15 October, 2012

Investigation of plasma instabilities in the stagnated $Z$ pinch

V. V. Ivanov, J. P. Chittenden, R. C. Mancini, D. Papp, N. Niasse, S. D. Altemara, and A. A. Anderson

Phys. Rev. E 86, 046403 (2012) - Published 22 October, 2012

Wire ablation dynamics model and its application to imploding wire arrays of different geometries

A. A. Esaulov, V. L. Kantsyrev, A. S. Safronova, A. L. Velikovich, I. K. Shrestha, K. M. Williamson, and G. C. Osborne

Phys. Rev. E 86, 046404 (2012) - Published 22 October, 2012

Late-time quadratic growth in single-mode Rayleigh-Taylor instability

Tie Wei and Daniel Livescu

Phys. Rev. E 86, 046405 (2012) - Published 22 October, 2012

Molecular dynamics simulations and generalized Lenard-Balescu calculations of electron-ion temperature equilibration in plasmas

Lorin X. Benedict, Michael P. Surh, John I. Castor, Saad A. Khairallah, Heather D. Whitley, David F. Richards, James N. Glosli, Michael S. Murillo, Christian R. Scullard, Paul E. Grabowski, David Michta, and Frank R. Graziani

Phys. Rev. E 86, 046406 (2012) - Published 25 October, 2012