Volume 95, Issue 6

June 2017

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Critical behavior of a two-step contagion model with multiple seeds

Wonjun Choi, Deokjae Lee, and B. Kahng

Phys. Rev. E 95, 062115 (2017) - Published 12 June, 2017

Using a two-step extension of a well-known epidemic model with multiple seeds, the authors observe two different spreading behaviors. Depending on the concentration of initially infected seeds, the epidemic transition can be a hybrid one showing both continuous and discontinuous behavior, or a continuous one.

EDITORS' SUGGESTION

Bubble gating in biological ion channels: A density functional theory study

Florian Gußmann and Roland Roth

Phys. Rev. E 95, 062407 (2017) - Published 12 June, 2017

This paper presents results on the distribution of a liquid inside a biological ion channel, using density functional theory. The authors find their results consistent with the bubble-gating model, in which pockets of low density fluid that appear in narrow passages trigger the gating of the channel.

EDITORS' SUGGESTION

Modeling polymorphic transformation of rotating bacterial flagella in a viscous fluid

William Ko, Sookkyung Lim, Wanho Lee, Yongsam Kim, Howard C. Berg, and Charles S. Peskin

Phys. Rev. E 95, 063106 (2017) - Published 14 June, 2017

In this paper, the authors study two different mechanisms that cause shape changes in the flagella of swimming bacteria. They describe the motion of the flagellar filaments with a model that includes a fluid-structure interaction, and find agreement with previously obtained experimental results.

RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Temporal disorder as a mechanism for spatially heterogeneous diffusion

Paul C. Bressloff and Sean D. Lawley

Phys. Rev. E 95, 060101(R) (2017) - Published 6 June, 2017

RAPID COMMUNICATION

Information trimming: Sufficient statistics, mutual information, and predictability from effective channel states

Ryan G. James, John R. Mahoney, and James P. Crutchfield

Phys. Rev. E 95, 060102(R) (2017) - Published 13 June, 2017

RAPID COMMUNICATION

Columnar domains and anisotropic growth laws in dipolar systems

Arunkumar Bupathy, Varsha Banerjee, and Sanjay Puri

Phys. Rev. E 95, 060103(R) (2017) - Published 28 June, 2017

Nonlinear Dynamics and Chaos

RAPID COMMUNICATION

From bulk self-assembly to electrical diffuse layer in a continuum approach for ionic liquids: The impact of anion and cation size asymmetry

Sariel Bier, Nir Gavish, Hannes Uecker, and Arik Yochelis

Phys. Rev. E 95, 060201(R) (2017) - Published 2 June, 2017

RAPID COMMUNICATION

Intermittent many-body dynamics at equilibrium

C. Danieli, D. K. Campbell, and S. Flach

Phys. Rev. E 95, 060202(R) (2017) - Published 2 June, 2017

RAPID COMMUNICATION

Escape routes, weak links, and desynchronization in fluctuation-driven networks

Benjamin Schäfer, Moritz Matthiae, Xiaozhu Zhang, Martin Rohden, Marc Timme, and Dirk Witthaut

Phys. Rev. E 95, 060203(R) (2017) - Published 9 June, 2017

Colloids, Complex Fluids, and Active Matter

RAPID COMMUNICATION

Ultra-long-range dynamic correlations in a microscopic model for aging gels

Pinaki Chaudhuri and Ludovic Berthier

Phys. Rev. E 95, 060601(R) (2017) - Published 15 June, 2017

RAPID COMMUNICATION

Structural interactions in ionic liquids linked to higher-order Poisson-Boltzmann equations

R. Blossey, A. C. Maggs, and R. Podgornik

Phys. Rev. E 95, 060602(R) (2017) - Published 28 June, 2017

Liquid Crystals

RAPID COMMUNICATION

Chiral edge fluctuations of colloidal membranes

Leroy L. Jia, Mark J. Zakhary, Zvonimir Dogic, Robert A. Pelcovits, and Thomas R. Powers

Phys. Rev. E 95, 060701(R) (2017) - Published 30 June, 2017

Granular Materials

RAPID COMMUNICATION

Universality in quasi-two-dimensional granular shock fronts above an intruder

M. Yasinul Karim and Eric I. Corwin

Phys. Rev. E 95, 060901(R) (2017) - Published 23 June, 2017

Plasma Physics

RAPID COMMUNICATION

Energy transfer channels and turbulence cascade in Vlasov-Maxwell turbulence

Yan Yang, W. H. Matthaeus, T. N. Parashar, P. Wu, M. Wan, Y. Shi, S. Chen, V. Roytershteyn, and W. Daughton

Phys. Rev. E 95, 061201(R) (2017) - Published 29 June, 2017

Computational Physics

RAPID COMMUNICATION

Transient hydrodynamic finite-size effects in simulations under periodic boundary conditions

Adelchi J. Asta, Maximilien Levesque, Rodolphe Vuilleumier, and Benjamin Rotenberg

Phys. Rev. E 95, 061301(R) (2017) - Published 20 June, 2017

RAPID COMMUNICATION

Sparse modeling approach to analytical continuation of imaginary-time quantum Monte Carlo data

Junya Otsuki, Masayuki Ohzeki, Hiroshi Shinaoka, and Kazuyoshi Yoshimi

Phys. Rev. E 95, 061302(R) (2017) - Published 21 June, 2017

ARTICLES

Statistical Physics

Stochastic thermodynamics in the strong coupling regime: An unambiguous approach based on coarse graining

Philipp Strasberg and Massimiliano Esposito

Phys. Rev. E 95, 062101 (2017) - Published 1 June, 2017

Extended states with Poisson spectral statistics

Triparna Mondal, Suchetana Sadhukhan, and Pragya Shukla

Phys. Rev. E 95, 062102 (2017) - Published 2 June, 2017

Performance optimization in two-dimensional Brownian rotary ratchet models

Hiroki Tutu, Katsuya Ouchi, and Takehiko Horita

Phys. Rev. E 95, 062103 (2017) - Published 2 June, 2017

Representation of the direct correlation function of the hard-sphere fluid

S. Pieprzyk, A. C. Brańka, and D. M. Heyes

Phys. Rev. E 95, 062104 (2017) - Published 2 June, 2017

Bose-Einstein condensation in chains with power-law hoppings: Exact mapping on the critical behavior in $d$ -dimensional regular lattices

W. S. Dias, D. Bertrand, and M. L. Lyra

Phys. Rev. E 95, 062105 (2017) - Published 5 June, 2017

Characterizing time series via complexity-entropy curves

Haroldo V. Ribeiro, Max Jauregui, Luciano Zunino, and Ervin K. Lenzi

Phys. Rev. E 95, 062106 (2017) - Published 5 June, 2017

Geometric structure and information change in phase transitions

Eun-jin Kim and Rainer Hollerbach

Phys. Rev. E 95, 062107 (2017) - Published 6 June, 2017

Symmetries and nonequilibrium thermodynamics

Sergio Bordel

Phys. Rev. E 95, 062108 (2017) - Published 8 June, 2017

Gain and loss in open quantum systems

Hichem Eleuch and Ingrid Rotter

Phys. Rev. E 95, 062109 (2017) - Published 8 June, 2017

Strong correlations between the exponent $α$ and the particle number for a Renyi monoatomic gas in Gibbs' statistical mechanics

A. Plastino and M. C. Rocca

Phys. Rev. E 95, 062110 (2017) - Published 8 June, 2017

Nonequilibrium dynamics of a pure dry friction model subjected to colored noise

Paul M. Geffert and Wolfram Just

Phys. Rev. E 95, 062111 (2017) - Published 8 June, 2017

Fluctuation-induced forces in confined ideal and imperfect Bose gases

H. W. Diehl and Sergei B. Rutkevich

Phys. Rev. E 95, 062112 (2017) - Published 8 June, 2017

Multicritical points and topology-induced inverse transition in the random-field Blume-Capel model in a random network

R. Erichsen, Jr., Amanda Azevedo Lopes, and S. G. Magalhaes

Phys. Rev. E 95, 062113 (2017) - Published 9 June, 2017

Entropy measures, entropy estimators, and their performance in quantifying complex dynamics: Effects of artifacts, nonstationarity, and long-range correlations

Wanting Xiong, Luca Faes, and Plamen Ch. Ivanov

Phys. Rev. E 95, 062114 (2017) - Published 12 June, 2017

EDITORS' SUGGESTION

Critical behavior of a two-step contagion model with multiple seeds

Wonjun Choi, Deokjae Lee, and B. Kahng

Phys. Rev. E 95, 062115 (2017) - Published 12 June, 2017

Diffusion in the presence of a local attracting factor: Theory and interdisciplinary applications

Hardi Veermäe and Marco Patriarca

Phys. Rev. E 95, 062116 (2017) - Published 13 June, 2017

Interference of two codirectional exclusion processes in the presence of a static bottleneck: A biologically motivated model

Bhavya Mishra and Debashish Chowdhury

Phys. Rev. E 95, 062117 (2017) - Published 13 June, 2017

Genuine localization transition in a long-range hopping model

Xiangyu Cao, Alberto Rosso, Jean-Philippe Bouchaud, and Pierre Le Doussal

Phys. Rev. E 95, 062118 (2017) - Published 14 June, 2017

Does greed help a forager survive?

U. Bhat, S. Redner, and O. Bénichou

Phys. Rev. E 95, 062119 (2017) - Published 15 June, 2017

Frustrated crystallization of a monolayer of magnetized beads under geometrical confinement

J. Schockmel, N. Vandewalle, E. Opsomer, and G. Lumay

Phys. Rev. E 95, 062120 (2017) - Published 15 June, 2017

Memory erasure using time-multiplexed potentials

Saurav Talukdar, Shreyas Bhaban, and Murti V. Salapaka

Phys. Rev. E 95, 062121 (2017) - Published 19 June, 2017

Discovering phases, phase transitions, and crossovers through unsupervised machine learning: A critical examination

Wenjian Hu, Rajiv R. P. Singh, and Richard T. Scalettar

Phys. Rev. E 95, 062122 (2017) - Published 19 June, 2017

Entropy production and time asymmetry in the presence of strong interactions

H. J. D. Miller and J. Anders

Phys. Rev. E 95, 062123 (2017) - Published 19 June, 2017

Fluctuations of absorption of interacting diffusing particles by multiple absorbers

Tal Agranov and Baruch Meerson

Phys. Rev. E 95, 062124 (2017) - Published 19 June, 2017

Population density equations for stochastic processes with memory kernels

Yi Ming Lai and Marc de Kamps

Phys. Rev. E 95, 062125 (2017) - Published 20 June, 2017

Monte Carlo study of the ordering in a strongly frustrated liquid crystal

S. George, C. Bentham, X. Zeng, G. Ungar, and G. A. Gehring

Phys. Rev. E 95, 062126 (2017) - Published 20 June, 2017

Thermodynamics of quantum information scrambling

Michele Campisi and John Goold

Phys. Rev. E 95, 062127 (2017) - Published 20 June, 2017

Einstein relation and hydrodynamics of nonequilibrium mass transport processes

Arghya Das, Anupam Kundu, and Punyabrata Pradhan

Phys. Rev. E 95, 062128 (2017) - Published 21 June, 2017

Influence of measurement error on Maxwell's demon

Vegard Sørdal, Joakim Bergli, and Y. M. Galperin

Phys. Rev. E 95, 062129 (2017) - Published 21 June, 2017

Phase ordering dynamics of reconstituting particles

F. A. Gómez Albarracín, H. D. Rosales, and M. D. Grynberg

Phys. Rev. E 95, 062130 (2017) - Published 22 June, 2017

Autonomous rotor heat engine

Alexandre Roulet, Stefan Nimmrichter, Juan Miguel Arrazola, Stella Seah, and Valerio Scarani

Phys. Rev. E 95, 062131 (2017) - Published 23 June, 2017

Out-of-equilibrium protocol for Rényi entropies via the Jarzynski equality

Vincenzo Alba

Phys. Rev. E 95, 062132 (2017) - Published 26 June, 2017

Log-log growth of channel capacity for nondispersive nonlinear optical fiber channel in intermediate power range

I. S. Terekhov, A. V. Reznichenko, Ya. A. Kharkov, and S. K. Turitsyn

Phys. Rev. E 95, 062133 (2017) - Published 26 June, 2017

Finite-time and finite-size scalings in the evaluation of large-deviation functions: Numerical approach in continuous time

Esteban Guevara Hidalgo, Takahiro Nemoto, and Vivien Lecomte

Phys. Rev. E 95, 062134 (2017) - Published 28 June, 2017

Stochastic dynamics for reinfection by transmitted diseases

Alessandro S. Barros and Suani T. R. Pinho

Phys. Rev. E 95, 062135 (2017) - Published 29 June, 2017

Equilibrium structure and off-equilibrium kinetics of a magnet with tunable frustration

Federico Corberi, Manoj Kumar, Sanjay Puri, and Eugenio Lippiello

Phys. Rev. E 95, 062136 (2017) - Published 29 June, 2017

Diffusion-controlled formation and collapse of a $d$ -dimensional $A$ -particle island in the $B$ -particle sea

Boris M. Shipilevsky

Phys. Rev. E 95, 062137 (2017) - Published 30 June, 2017

Correspondence between spanning trees and the Ising model on a square lattice

G. M. Viswanathan

Phys. Rev. E 95, 062138 (2017) - Published 30 June, 2017

Thermodynamics of random number generation

Cina Aghamohammadi and James P. Crutchfield

Phys. Rev. E 95, 062139 (2017) - Published 30 June, 2017

Heat perturbation spreading in the Fermi-Pasta-Ulam- $β$ system with next-nearest-neighbor coupling: Competition between phonon dispersion and nonlinearity

Daxing Xiong

Phys. Rev. E 95, 062140 (2017) - Published 30 June, 2017

Unjamming in models with analytic pairwise potentials

Stefan Kooij and Edan Lerner

Phys. Rev. E 95, 062141 (2017) - Published 30 June, 2017

Continuous-variable approach to the spectral properties and quantum states of the two-component Bose-Hubbard dimer

F. Lingua and V. Penna

Phys. Rev. E 95, 062142 (2017) - Published 30 June, 2017

Minimal motor for powering particle motion from spin imbalance

Ulf Bissbort, Colin Teo, Chu Guo, Giulio Casati, Giuliano Benenti, and Dario Poletti

Phys. Rev. E 95, 062143 (2017) - Published 30 June, 2017

When memory pays: Discord in hidden Markov models

Emma Lathouwers and John Bechhoefer

Phys. Rev. E 95, 062144 (2017) - Published 30 June, 2017

Work extraction in an isolated quantum lattice system: Grand canonical and generalized Gibbs ensemble predictions

Ranjan Modak and Marcos Rigol

Phys. Rev. E 95, 062145 (2017) - Published 30 June, 2017

Nonlinear Dynamics and Chaos

Stochastic uncertainty of advected curves in finite-time unsteady flows

Sanjeeva Balasuriya

Phys. Rev. E 95, 062201 (2017) - Published 2 June, 2017

Classical counterparts of quantum attractors in generic dissipative systems

Gabriel G. Carlo, Leonardo Ermann, Alejandro M. F. Rivas, María E. Spina, and Dario Poletti

Phys. Rev. E 95, 062202 (2017) - Published 5 June, 2017

Nonlinear dynamics and band transport in a superlattice driven by a plane wave

A. Apostolakis, M. K. Awodele, K. N. Alekseev, F. V. Kusmartsev, and A. G. Balanov

Phys. Rev. E 95, 062203 (2017) - Published 5 June, 2017

Coupling conditions for globally stable and robust synchrony of chaotic systems

Suman Saha, Arindam Mishra, E. Padmanaban, Sourav K. Bhowmick, Prodyot K. Roy, Bivas Dam, and Syamal K. Dana

Phys. Rev. E 95, 062204 (2017) - Published 9 June, 2017

GOE-GUE-Poisson transitions in the nearest-neighbor spacing distribution of magnetoexcitons

Frank Schweiner, Jörg Main, and Günter Wunner

Phys. Rev. E 95, 062205 (2017) - Published 9 June, 2017

Revoking amplitude and oscillation deaths by low-pass filter in coupled oscillators

Wei Zou, Meng Zhan, and Jürgen Kurths

Phys. Rev. E 95, 062206 (2017) - Published 12 June, 2017

Rattleback dynamics and its reversal time of rotation

Yoichiro Kondo and Hiizu Nakanishi

Phys. Rev. E 95, 062207 (2017) - Published 12 June, 2017

Solitons in the nonlinear Schrödinger equation with two power-law nonlinear terms modulated in time and space

Houria Triki, K. Porsezian, and Amitava Choudhuri

Phys. Rev. E 95, 062208 (2017) - Published 12 June, 2017

Achilles' heel of a traveling pulse subject to a local external stimulus

Kei Nishi, Shogo Suzuki, Katsuhiko Kayahara, Masakazu Kuze, Hiroyuki Kitahata, Satoshi Nakata, and Yasumasa Nishiura

Phys. Rev. E 95, 062209 (2017) - Published 12 June, 2017

Predicting mixing via resonances: Application to spherical piecewise isometries

Lauren D. Smith, Paul P. Park, Paul B. Umbanhowar, Julio M. Ottino, and Richard M. Lueptow

Phys. Rev. E 95, 062210 (2017) - Published 13 June, 2017

Multiple and exact soliton solutions of the perturbed Korteweg–de Vries equation of long surface waves in a convective fluid via Painlevé analysis, factorization, and simplest equation methods

Ehab S. Selima, Xiaohua Yao, and Abdul-Majid Wazwaz

Phys. Rev. E 95, 062211 (2017) - Published 14 June, 2017

Bifurcation trees of Stark-Wannier ladders for accelerated Bose-Einstein condensates in an optical lattice

Andrea Sacchetti

Phys. Rev. E 95, 062212 (2017) - Published 15 June, 2017

From synchronous to one-time delayed dynamics in coupled maps

Celia Anteneodo, Juan Carlos González-Avella, and Raúl O. Vallejos

Phys. Rev. E 95, 062213 (2017) - Published 16 June, 2017

From dynamical systems with time-varying delay to circle maps and Koopman operators

David Müller, Andreas Otto, and Günter Radons

Phys. Rev. E 95, 062214 (2017) - Published 16 June, 2017

Asymmetry-induced synchronization in oscillator networks

Yuanzhao Zhang, Takashi Nishikawa, and Adilson E. Motter

Phys. Rev. E 95, 062215 (2017) - Published 16 June, 2017

Emergence of dispersive shocks and rarefaction waves in power-law contact models

H. Yasuda, C. Chong, J. Yang, and P. G. Kevrekidis

Phys. Rev. E 95, 062216 (2017) - Published 16 June, 2017

Output-only parameter identification of a colored-noise-driven Van-der-Pol oscillator: Thermoacoustic instabilities as an example

Giacomo Bonciolini, Edouard Boujo, and Nicolas Noiray

Phys. Rev. E 95, 062217 (2017) - Published 19 June, 2017

Escape dynamics through a continuously growing leak

Tamás Kovács and József Vanyó

Phys. Rev. E 95, 062218 (2017) - Published 20 June, 2017

Extreme events in FitzHugh-Nagumo oscillators coupled with two time delays

Arindam Saha and Ulrike Feudel

Phys. Rev. E 95, 062219 (2017) - Published 22 June, 2017

Amplitude death in a pair of one-dimensional complex Ginzburg-Landau systems coupled by diffusive connections

Hakui Teki, Keiji Konishi, and Naoyuki Hara

Phys. Rev. E 95, 062220 (2017) - Published 23 June, 2017

Noise-induced stabilization of collective dynamics

Pau Clusella and Antonio Politi

Phys. Rev. E 95, 062221 (2017) - Published 23 June, 2017

Entanglement and its relationship to classical dynamics

Joshua B. Ruebeck, Jie Lin, and Arjendu K. Pattanayak

Phys. Rev. E 95, 062222 (2017) - Published 26 June, 2017

Analytic solutions throughout a period doubling route to chaos

Marko S. Milosavljevic, Jonathan N. Blakely, Aubrey N. Beal, and Ned J. Corron

Phys. Rev. E 95, 062223 (2017) - Published 29 June, 2017

Geometric determination of classical actions of heteroclinic and unstable periodic orbits

Jizhou Li and Steven Tomsovic

Phys. Rev. E 95, 062224 (2017) - Published 29 June, 2017

Ensemble dynamics and the emergence of correlations in one- and two-dimensional wave turbulence

Thomas Y. Sheffield and Benno Rumpf

Phys. Rev. E 95, 062225 (2017) - Published 30 June, 2017

Breather-to-soliton transformation rules in the hierarchy of nonlinear Schrödinger equations

Amdad Chowdury and Wieslaw Krolikowski

Phys. Rev. E 95, 062226 (2017) - Published 30 June, 2017

Networks and Complex Systems

Weighted growing simplicial complexes

Owen T. Courtney and Ginestra Bianconi

Phys. Rev. E 95, 062301 (2017) - Published 12 June, 2017

$Q$ -voter model with nonconformity in freely forming groups: Does the size distribution matter?

Wojciech Radosz, Adam Mielnik-Pyszczorski, Marta Brzezińska, and Katarzyna Sznajd-Weron

Phys. Rev. E 95, 062302 (2017) - Published 12 June, 2017

Effects of communication burstiness on consensus formation and tipping points in social dynamics

C. Doyle, B. K. Szymanski, and G. Korniss

Phys. Rev. E 95, 062303 (2017) - Published 12 June, 2017

Finite-size analysis of the detectability limit of the stochastic block model

Jean-Gabriel Young, Patrick Desrosiers, Laurent Hébert-Dufresne, Edward Laurence, and Louis J. Dubé

Phys. Rev. E 95, 062304 (2017) - Published 19 June, 2017

Consensus formation times in anisotropic societies

Juan Neirotti

Phys. Rev. E 95, 062305 (2017) - Published 19 June, 2017

How the fittest compete for leadership: A tale of tails

J. M. Luck and A. Mehta

Phys. Rev. E 95, 062306 (2017) - Published 23 June, 2017

Collapse of resilience patterns in generalized Lotka-Volterra dynamics and beyond

Chengyi Tu, Jacopo Grilli, Friedrich Schuessler, and Samir Suweis

Phys. Rev. E 95, 062307 (2017) - Published 27 June, 2017

Emergence of robustness in networks of networks

Kevin Roth, Flaviano Morone, Byungjoon Min, and Hernán A. Makse

Phys. Rev. E 95, 062308 (2017) - Published 30 June, 2017

Relating the large-scale structure of time series and visibility networks

Miguel A. Rodríguez

Phys. Rev. E 95, 062309 (2017) - Published 30 June, 2017

Spectral partitioning in equitable graphs

Paolo Barucca

Phys. Rev. E 95, 062310 (2017) - Published 30 June, 2017

Biological Physics

Fluctuation relations between hierarchical kinetically equivalent networks with Arrhenius-type transitions and their roles in systems and structural biology

De-Ming Deng, Yi-Ta Lu, and Cheng-Hung Chang

Phys. Rev. E 95, 062401 (2017) - Published 2 June, 2017

Orientational phase transitions and the assembly of viral capsids

Sanjay Dharmavaram, Fangming Xie, William Klug, Joseph Rudnick, and Robijn Bruinsma

Phys. Rev. E 95, 062402 (2017) - Published 6 June, 2017

Coexisting origins of subdiffusion in internal dynamics of proteins

Yasmine Meroz, Victor Ovchinnikov, and Martin Karplus

Phys. Rev. E 95, 062403 (2017) - Published 6 June, 2017

Growth-dependent behavioral difference in bacterial chemotaxis

Chi Zhang, Rongjing Zhang, and Junhua Yuan

Phys. Rev. E 95, 062404 (2017) - Published 7 June, 2017

Crossing fitness canyons by a finite population

David B. Saakian, Alexander S. Bratus, and Chin-Kun Hu

Phys. Rev. E 95, 062405 (2017) - Published 9 June, 2017

Phenomenology of stochastic exponential growth

Dan Pirjol, Farshid Jafarpour, and Srividya Iyer-Biswas

Phys. Rev. E 95, 062406 (2017) - Published 9 June, 2017

EDITORS' SUGGESTION

Bubble gating in biological ion channels: A density functional theory study

Florian Gußmann and Roland Roth

Phys. Rev. E 95, 062407 (2017) - Published 12 June, 2017

Fluorescence correlation spectroscopy experiments to quantify free diffusion coefficients in reaction-diffusion systems: The case of ${Ca}^{2 +}$ and its dyes

Lorena Sigaut, Cecilia Villarruel, María Laura Ponce, and Silvina Ponce Dawson

Phys. Rev. E 95, 062408 (2017) - Published 12 June, 2017

Coherence of biochemical oscillations is bounded by driving force and network topology

Andre C. Barato and Udo Seifert

Phys. Rev. E 95, 062409 (2017) - Published 14 June, 2017

Universal lower bound on the free-energy cost of molecular measurements

Suman G. Das, Madan Rao, and Garud Iyengar

Phys. Rev. E 95, 062410 (2017) - Published 15 June, 2017

Apex predator and the cyclic competition in a rock-paper-scissors game of three species

C. A. Souza-Filho, D. Bazeia, and J. G. G. S. Ramos

Phys. Rev. E 95, 062411 (2017) - Published 19 June, 2017

Three-dimensional mechanisms of macro-to-micro-scale transport and absorption enhancement by gut villi motions

Yanxing Wang and James G. Brasseur

Phys. Rev. E 95, 062412 (2017) - Published 19 June, 2017

Lateral trapping of DNA inside a voltage gated nanopore

Thomas Töws and Peter Reimann

Phys. Rev. E 95, 062413 (2017) - Published 19 June, 2017

Mode-locking behavior of Izhikevich neurons under periodic external forcing

AmirAli Farokhniaee and Edward W. Large

Phys. Rev. E 95, 062414 (2017) - Published 22 June, 2017

Backward renormalization-group inference of cortical dipole sources and neural connectivity efficacy

Selene da Rocha Amaral, Luiz A. Baccalá, Leonardo S. Barbosa, and Nestor Caticha

Phys. Rev. E 95, 062415 (2017) - Published 23 June, 2017

Empirical resistive-force theory for slender biological filaments in shear-thinning fluids

Emily E. Riley and Eric Lauga

Phys. Rev. E 95, 062416 (2017) - Published 23 June, 2017

Weak nanoscale chaos and anomalous relaxation in DNA

Alexey K. Mazur

Phys. Rev. E 95, 062417 (2017) - Published 26 June, 2017

Careful accounting of extrinsic noise in protein expression reveals correlations among its sources

John A. Cole and Zaida Luthey-Schulten

Phys. Rev. E 95, 062418 (2017) - Published 27 June, 2017

Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics

Daniele De Martino

Phys. Rev. E 95, 062419 (2017) - Published 28 June, 2017

Polymers

Magnetorheological response of highly filled magnetoactive elastomers from perspective of mechanical energy density: Fractal aggregates above the nanometer scale?

Vladislav V. Sorokin, Inna A. Belyaeva, Mikhail Shamonin, and Elena Yu. Kramarenko

Phys. Rev. E 95, 062501 (2017) - Published 5 June, 2017

Colloids, Complex Fluids, and Active Matter

Anisotropic hydrodynamic function of dense confined colloids

Kim Nygård, Johan Buitenhuis, Matias Kagias, Konstantins Jefimovs, Federico Zontone, and Yuriy Chushkin

Phys. Rev. E 95, 062601 (2017) - Published 2 June, 2017

Artificial living crystals in confined environment

Wen Yang, Vyacheslav R. Misko, Jacques Tempere, Minghui Kong, and Francois M. Peeters

Phys. Rev. E 95, 062602 (2017) - Published 5 June, 2017

Pragmatical access to the viscous flow of undercooled liquids

U. Buchenau

Phys. Rev. E 95, 062603 (2017) - Published 13 June, 2017

Aggregation and fragmentation dynamics in random flows: From tracers to inertial aggregates

Ksenia Guseva and Ulrike Feudel

Phys. Rev. E 95, 062604 (2017) - Published 15 June, 2017

Shear-induced laning transition in a confined colloidal film

Sascha Gerloff, Tarlan A. Vezirov, and Sabine H. L. Klapp

Phys. Rev. E 95, 062605 (2017) - Published 20 June, 2017

Structure and reentrant percolation in an inverse patchy colloidal system

J. L. B. de Araújo, F. F. Munarin, G. A. Farias, F. M. Peeters, and W. P. Ferreira

Phys. Rev. E 95, 062606 (2017) - Published 26 June, 2017

Self-propulsion and crossing statistics under random initial conditions

M. Hubert, M. Labousse, and S. Perrard

Phys. Rev. E 95, 062607 (2017) - Published 26 June, 2017

Transient flows in active porous media

Lefteris I. Kosmidis and Kaare H. Jensen

Phys. Rev. E 95, 062608 (2017) - Published 26 June, 2017

Curvature-controlled defect dynamics in active systems

Sebastian Ehrig, Jonathan Ferracci, Richard Weinkamer, and John W. C. Dunlop

Phys. Rev. E 95, 062609 (2017) - Published 27 June, 2017

Transitions between multiple dynamical states in a confined dense active-particle system

Pallab Sinha Mahapatra, Ajinkya Kulkarni, Sam Mathew, Mahesh V. Panchagnula, and Srikanth Vedantam

Phys. Rev. E 95, 062610 (2017) - Published 28 June, 2017

Separation of two attractive ferromagnetic ellipsoidal particles by hydrodynamic interactions under alternating magnetic field

Micheline Abbas and Georges Bossis

Phys. Rev. E 95, 062611 (2017) - Published 29 June, 2017

Tuning bacterial hydrodynamics with magnetic fields

C. J. Pierce, E. Mumper, E. E. Brown, J. T. Brangham, B. H. Lower, S. K. Lower, F. Y. Yang, and R. Sooryakumar

Phys. Rev. E 95, 062612 (2017) - Published 30 June, 2017

Dynamical transition in a jammed state of a quasi-two-dimensional foam

Rei Kurita, Yujiro Furuta, Naoya Yanagisawa, and Noriko Oikawa

Phys. Rev. E 95, 062613 (2017) - Published 30 June, 2017

Liquid Crystals

Anisotropy of electrostatic interaction in free-standing smectic- $C^{*}$ films

S. V. Ulyanov

Phys. Rev. E 95, 062701 (2017) - Published 7 June, 2017

Dielectric relaxation process of a partially unwound helical structure in ferroelectric liquid crystals

Amit Choudhary, Ambika Bawa, Rajesh, Surinder P. Singh, and Ashok M. Biradar

Phys. Rev. E 95, 062702 (2017) - Published 8 June, 2017

Effect of head group orientation on phospholipid assembly

Tanay Paul and Jayashree Saha

Phys. Rev. E 95, 062703 (2017) - Published 19 June, 2017

Chiral smectic- $A$ and smectic- $C$ phases with de Vries characteristics

Neelam Yadav, V. P. Panov, V. Swaminathan, S. P. Sreenilayam, J. K. Vij, T. S. Perova, R. Dhar, A. Panov, D. Rodriguez-Lojo, and P. J. Stevenson

Phys. Rev. E 95, 062704 (2017) - Published 21 June, 2017

Spatially periodic deformations in planar and twisted flexoelectric nematic layers

M. Buczkowska and G. Derfel

Phys. Rev. E 95, 062705 (2017) - Published 26 June, 2017

Curvature-driven stability of defects in nematic textures over spherical disks

Xiuqing Duan and Zhenwei Yao

Phys. Rev. E 95, 062706 (2017) - Published 26 June, 2017

Films and Interfaces

Size dependence of the surface tension of a free surface of an isotropic fluid

Sergii Burian, Mykola Isaiev, Konstantinos Termentzidis, Vladimir Sysoev, and Leonid Bulavin

Phys. Rev. E 95, 062801 (2017) - Published 8 June, 2017

Multiscaling behavior of atomic-scale friction

M. Jannesar, T. Jamali, A. Sadeghi, S. M. S. Movahed, G. Fesler, E. Meyer, B. Khoshnevisan, and G. R. Jafari

Phys. Rev. E 95, 062802 (2017) - Published 19 June, 2017

Phase-field-crystal investigation of the morphology of a steady-state dendrite tip on the atomic scale

Sai Tang, Jincheng Wang, Junjie Li, Zhijun Wang, Yaolin Guo, Can Guo, and Yaohe Zhou

Phys. Rev. E 95, 062803 (2017) - Published 30 June, 2017

Effect of impurities on chirality conversion by grinding

Hiroyasu Katsuno and Makio Uwaha

Phys. Rev. E 95, 062804 (2017) - Published 30 June, 2017

Granular Materials

Pneumatic fractures in confined granular media

Fredrik K. Eriksen, Renaud Toussaint, Antoine L. Turquet, Knut J. Måløy, and Eirik G. Flekkøy

Phys. Rev. E 95, 062901 (2017) - Published 12 June, 2017

Discontinuous change of shear modulus for frictional jammed granular materials

Michio Otsuki and Hisao Hayakawa

Phys. Rev. E 95, 062902 (2017) - Published 14 June, 2017

Charging changes contact composition in binary sphere packings

André Schella, Simon Weis, and Matthias Schröter

Phys. Rev. E 95, 062903 (2017) - Published 15 June, 2017

Mechanical excitation of rodlike particles by a vibrating plate

Torsten Trittel, Kirsten Harth, and Ralf Stannarius

Phys. Rev. E 95, 062904 (2017) - Published 21 June, 2017

Stability of gas channels in a dense suspension in the presence of obstacles

Raphaël Poryles, Germán Varas, and Valérie Vidal

Phys. Rev. E 95, 062905 (2017) - Published 23 June, 2017

Shear-rate-dependent transport coefficients in granular suspensions

Vicente Garzó

Phys. Rev. E 95, 062906 (2017) - Published 28 June, 2017

Solid Mechanics

Modeling energy storage and structural evolution during finite viscoplastic deformation of glassy polymers

Rui Xiao, Gagik Ghazaryan, Theo A. Tervoort, and Thao D. Nguyen

Phys. Rev. E 95, 063001 (2017) - Published 6 June, 2017

Broadband cloaking of flexural waves

Ahmad Zareei and Mohammad-Reza Alam

Phys. Rev. E 95, 063002 (2017) - Published 21 June, 2017

Golf-course and funnel energy landscapes: Protein folding concepts in martensites

N. Shankaraiah

Phys. Rev. E 95, 063003 (2017) - Published 26 June, 2017

Three-dimensional to two-dimensional transition in mode-I fracture microbranching in a perturbed hexagonal close-packed lattice

Shay I. Heizler and David A. Kessler

Phys. Rev. E 95, 063004 (2017) - Published 29 June, 2017

Fluid Dynamics

Direct numerical simulation study of statistically stationary propagation of a reaction wave in homogeneous turbulence

Rixin Yu and Andrei N. Lipatnikov

Phys. Rev. E 95, 063101 (2017) - Published 1 June, 2017

Nested polyhedra model of turbulence

Ö. D. Gürcan

Phys. Rev. E 95, 063102 (2017) - Published 6 June, 2017

Criteria for drop generation in multiphase microfluidic devices

Joseph D. Buttacci, Michael Loewenberg, Christine C. Roberts, Martin B. Nemer, and Rekha R. Rao

Phys. Rev. E 95, 063103 (2017) - Published 6 June, 2017

Internal rupture and rapid bouncing of impacting drops induced by submillimeter-scale textures

Rui Zhang, Xiwen Zhang, Pengfei Hao, and Feng He

Phys. Rev. E 95, 063104 (2017) - Published 9 June, 2017

Electro-osmotic flow through nanopores in thin and ultrathin membranes

Dmitriy V. Melnikov, Zachery K. Hulings, and Maria E. Gracheva

Phys. Rev. E 95, 063105 (2017) - Published 12 June, 2017

EDITORS' SUGGESTION

Modeling polymorphic transformation of rotating bacterial flagella in a viscous fluid

William Ko, Sookkyung Lim, Wanho Lee, Yongsam Kim, Howard C. Berg, and Charles S. Peskin

Phys. Rev. E 95, 063106 (2017) - Published 14 June, 2017

Direct numerical simulation of an arbitrarily shaped particle at a fluidic interface

Gregory Lecrivain, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi

Phys. Rev. E 95, 063107 (2017) - Published 15 June, 2017

Impact of diffusion on transverse dispersion in two-dimensional ordered and random porous media

Dzmitry Hlushkou, Stanislau Piatrusha, and Ulrich Tallarek

Phys. Rev. E 95, 063108 (2017) - Published 19 June, 2017

Electrohydrodynamic instability of ion-concentration shock wave in electrophoresis

Rahul Gaur and Supreet Singh Bahga

Phys. Rev. E 95, 063109 (2017) - Published 19 June, 2017

Experimental investigations on characteristics of stable water electrospray in air without discharge

Inyong Park, Won Seok Hong, Sang Bok Kim, and Sang Soo Kim

Phys. Rev. E 95, 063110 (2017) - Published 19 June, 2017

Linear and nonlinear perturbation analysis of the symmetry breaking in time-periodic propulsive wakes

Damien Jallas, Olivier Marquet, and David Fabre

Phys. Rev. E 95, 063111 (2017) - Published 20 June, 2017

Instability evolution of the viscous elliptic liquid jet in the Rayleigh regime

Shibo Gu, Lipo Wang, and David L. S. Hung

Phys. Rev. E 95, 063112 (2017) - Published 21 June, 2017

Combustion instability mitigation by magnetic fields

Agnes Jocher, Heinz Pitsch, Thomas Gomez, Jérôme Bonnety, and Guillaume Legros

Phys. Rev. E 95, 063113 (2017) - Published 22 June, 2017

Plasma Physics

Degeneracy and relativistic microreversibility relations for collisional-radiative equilibrium models

Gérald Faussurier and Christophe Blancard

Phys. Rev. E 95, 063201 (2017) - Published 1 June, 2017

Correlation and transport properties for mixtures at constant pressure and temperature

Alexander J. White, Lee A. Collins, Joel D. Kress, Christopher Ticknor, Jean Clérouin, Philippe Arnault, and Nicolas Desbiens

Phys. Rev. E 95, 063202 (2017) - Published 2 June, 2017

Kinetic modeling of x-ray laser-driven solid Al plasmas via particle-in-cell simulation

R. Royle, Y. Sentoku, R. C. Mancini, I. Paraschiv, and T. Johzaki

Phys. Rev. E 95, 063203 (2017) - Published 6 June, 2017

Picosecond time-resolved measurements of dense plasma line shifts

C. R. Stillman, P. M. Nilson, S. T. Ivancic, I. E. Golovkin, C. Mileham, I. A. Begishev, and D. H. Froula

Phys. Rev. E 95, 063204 (2017) - Published 13 June, 2017

Laser-driven shock waves studied by x-ray radiography

L. Antonelli, S. Atzeni, A. Schiavi, S. D. Baton, E. Brambrink, M. Koenig, C. Rousseaux, M. Richetta, D. Batani, P. Forestier-Colleoni, E. Le Bel, Y. Maheut, T. Nguyen-Bui, X. Ribeyre, and J. Trela

Phys. Rev. E 95, 063205 (2017) - Published 14 June, 2017

Numerical investigations of potential systematic uncertainties in iron opacity measurements at solar interior temperatures

T. Nagayama, J. E. Bailey, G. P. Loisel, G. A. Rochau, J. J. MacFarlane, and I. E. Golovkin

Phys. Rev. E 95, 063206 (2017) - Published 26 June, 2017

Plasma anisotropy around a dust particle placed in an external electric field

G. I. Sukhinin, A. V. Fedoseev, M. V. Salnikov, A. Rostom, M. M. Vasiliev, and O. F. Petrov

Phys. Rev. E 95, 063207 (2017) - Published 29 June, 2017

Contribution of electron-atom collisions to the plasma conductivity of noble gases

S. Rosmej, H. Reinholz, and G. Röpke

Phys. Rev. E 95, 063208 (2017) - Published 29 June, 2017

Coulomb collision model for use in nonthermal plasma simulation

Andrew M. Chap and Raymond J. Sedwick

Phys. Rev. E 95, 063209 (2017) - Published 29 June, 2017

Computational Physics

Acoustic multipole sources for the regularized lattice Boltzmann method: Comparison with multiple-relaxation-time models in the inviscid limit

Congshan Zhuo and Pierre Sagaut

Phys. Rev. E 95, 063301 (2017) - Published 6 June, 2017

Asymptotic modeling of transport phenomena at the interface between a fluid and a porous layer: Jump conditions

Philippe Angot, Benoît Goyeau, and J. Alberto Ochoa-Tapia

Phys. Rev. E 95, 063302 (2017) - Published 8 June, 2017

Kaiser-Bessel basis for particle-mesh interpolation

Xingyu Gao, Jun Fang, and Han Wang

Phys. Rev. E 95, 063303 (2017) - Published 9 June, 2017

Auxiliary variables for numerically solving nonlinear equations with softly broken symmetries

Ken D. Olum and Ali Masoumi

Phys. Rev. E 95, 063304 (2017) - Published 12 June, 2017

Chemical-potential-based lattice Boltzmann method for nonideal fluids

Binghai Wen, Xuan Zhou, Bing He, Chaoying Zhang, and Haiping Fang

Phys. Rev. E 95, 063305 (2017) - Published 13 June, 2017

Entropic multirelaxation-time lattice Boltzmann method for moving and deforming geometries in three dimensions

B. Dorschner, S. S. Chikatamarla, and I. V. Karlin

Phys. Rev. E 95, 063306 (2017) - Published 13 June, 2017

Modeling of nanoscale liquid mixture transport by density functional hydrodynamics

Oleg Yu. Dinariev and Nikolay V. Evseev

Phys. Rev. E 95, 063307 (2017) - Published 13 June, 2017

Determination of the conformal-field-theory central charge by the Wang-Landau algorithm

P. A. Belov, A. A. Nazarov, and A. O. Sorokin

Phys. Rev. E 95, 063308 (2017) - Published 14 June, 2017

Lattice Boltzmann simulations of heat transfer in fully developed periodic incompressible flows

Zimeng Wang, Helen Shang, and Junfeng Zhang

Phys. Rev. E 95, 063309 (2017) - Published 14 June, 2017

Flow and mass transfer around a core-shell reservoir

Badr Kaoui

Phys. Rev. E 95, 063310 (2017) - Published 15 June, 2017

Fourth-order analysis of a diffusive lattice Boltzmann method for barrier coatings

Kyle T. Strand, Aaron J. Feickert, and Alexander J. Wagner

Phys. Rev. E 95, 063311 (2017) - Published 20 June, 2017

Linearization-based method for solving a multicomponent diffusion phase-field model with arbitrary solution thermodynamics

M. J. Welland, E. Tenuta, and A. A. Prudil

Phys. Rev. E 95, 063312 (2017) - Published 23 June, 2017

Lattice Boltzmann solution of the transient Boltzmann transport equation in radiative and neutron transport

Yahui Wang, Liming Yan, and Yu Ma

Phys. Rev. E 95, 063313 (2017) - Published 23 June, 2017

Hybrid smoothed dissipative particle dynamics and immersed boundary method for simulation of red blood cells in flows

Ting Ye, Nhan Phan-Thien, Chwee Teck Lim, Lina Peng, and Huixin Shi

Phys. Rev. E 95, 063314 (2017) - Published 26 June, 2017

Population annealing simulations of a binary hard-sphere mixture

Jared Callaham and Jonathan Machta

Phys. Rev. E 95, 063315 (2017) - Published 27 June, 2017

Computational aspects of the smectization process in liquid crystals: An example study of a perfectly aligned two-dimensional hard-boomerang system

Agnieszka Chrzanowska

Phys. Rev. E 95, 063316 (2017) - Published 27 June, 2017

ERRATA

Erratum: Relationship between bond-breakage correlations and four-point correlations in heterogeneous glassy dynamics: Configuration changes and vibration modes [Phys. Rev. E 86, 041504 (2012)]

Hayato Shiba, Takeshi Kawasaki, and Akira Onuki

Phys. Rev. E 95, 069901 (2017) - Published 6 June, 2017

Publisher's Note: General scaling relations for locomotion in granular media [Phys. Rev. E 95, 052901 (2017)]

James Slonaker, D. Carrington Motley, Qiong Zhang, Stephen Townsend, Carmine Senatore, Karl Iagnemma, and Ken Kamrin

Phys. Rev. E 95, 069902 (2017) - Published 7 June, 2017

Publisher's Note: Fluctuating lattice Boltzmann method for the diffusion equation [Phys. Rev. E 94, 033302 (2016)]

Alexander J. Wagner and Kyle Strand

Phys. Rev. E 95, 069903 (2017) - Published 22 June, 2017

Erratum: Modeling rigid magnetically rotated microswimmers: Rotation axes, bistability, and controllability [Phys. Rev. E 90, 063006 (2014)]

Farshad Meshkati and Henry Chien Fu

Phys. Rev. E 95, 069904 (2017) - Published 22 June, 2017

Publisher's Note: X-ray shadow imprint of hydrodynamic instabilities on the surface of inertial confinement fusion capsules by the fuel fill tube [Phys. Rev. E 95, 031204(R) (2017)]

A. G. MacPhee, D. T. Casey, D. S. Clark, S. Felker, J. E. Field, S. W. Haan, B. A. Hammel, J. Kroll, O. L. Landen, D. A. Martinez, P. Michel, J. Milovich, A. Moore, A. Nikroo, N. Rice, H. F. Robey, V. A. Smalyuk, M. Stadermann, and C. R. Weber

Phys. Rev. E 95, 069905 (2017) - Published 27 June, 2017