HIGHLIGHTED ARTICLES

General scaling relations for locomotion in granular media

James Slonaker, D. Carrington Motley, Qiong Zhang, Stephen Townsend, Carmine Senatore, Karl Iagnemma, and Ken Kamrin

Phys. Rev. E 95, 052901 (2017) - Published 10 May, 2017

The authors find scaling relations that describe locomotion in granular media for a wide range of problems. Experimental tests and simulations demonstrate the validity of their simple model for rigid wheels of various shapes. An extension to different gravitational environments provides a model relevant for space exploration.

Local time of Lévy random walks: A path integral approach

Václav Zatloukal

Phys. Rev. E 95, 052136 (2017) - Published 23 May, 2017

This paper uses a path-integral method to study the local time of random walks, i.e. the time spent in the vicinity of an arbitrary point. The author focuses on time-independent Hamiltonians where a connection between the local time and the resolvent of the Hamiltonian is shown, and studies in detail the special case of Levy flights

Designing nucleosomal force sensors

M. Tompitak, L. de Bruin, B. Eslami-Mossallam, and H. Schiessel

Phys. Rev. E 95, 052402 (2017) - Published 8 May, 2017

The authors used a recently developed computational method to design a model nucleosome in which the DNA strand remains stably wrapped around the eight proteins in the octamer when no force is applied, but quickly unwraps under external tension. The work suggests the possibility that DNA sequences may have evolved on real genomes to affect physical properties of the nucleosome.

Model of the best-of-N nest-site selection process in honeybees

Andreagiovanni Reina, James A. R. Marshall, Vito Trianni, and Thomas Bose

Phys. Rev. E 95, 052411 (2017) - Published 22 May, 2017

This paper presents a model for collective decision making applied to a swarm of honeybees choosing a nest. The authors tackle the extension of a known binary option model to an arbitrary number of choices, and study the situation when one option is better than the rest.

Shear banding, discontinuous shear thickening, and rheological phase transitions in athermally sheared frictionless disks

Daniel Vågberg, Peter Olsson, and S. Teitel

Phys. Rev. E 95, 052903 (2017) - Published 30 May, 2017

This paper presents a model of the flow behavior of granular soft materials under shear. The authors introduce a tangentially directed viscous interaction, along with a contact force, and study a two-dimensional athermal system using computer simulations. Their results show a distinctive transition in the system’s rheological behavior which, in turn, may give rise to shear banding.

RAPID COMMUNICATIONS

Statistical Physics

Energy-dissipation anomaly in systems of localized waves

Basile Gallet

Phys. Rev. E 95, 050101(R) (2017) - Published 3 May, 2017

Quantum-to-classical transition in the work distribution for chaotic systems

Ignacio García-Mata, Augusto J. Roncaglia, and Diego A. Wisniacki

Phys. Rev. E 95, 050102(R) (2017) - Published 12 May, 2017

Driven Brownian particle as a paradigm for a nonequilibrium heat bath: Effective temperature and cyclic work extraction

R. Wulfert, M. Oechsle, T. Speck, and U. Seifert

Phys. Rev. E 95, 050103(R) (2017) - Published 22 May, 2017

Nonlinear Dynamics and Chaos

Coherent oscillations of driven rf SQUID metamaterials

Melissa Trepanier, Daimeng Zhang, Oleg Mukhanov, V. P. Koshelets, Philipp Jung, Susanne Butz, Edward Ott, Thomas M. Antonsen, Alexey V. Ustinov, and Steven M. Anlage

Phys. Rev. E 95, 050201(R) (2017) - Published 30 May, 2017

Polymers

Solvent-dependent critical properties of polymer adsorption

João A. Plascak, Paulo H. L. Martins, and Michael Bachmann

Phys. Rev. E 95, 050501(R) (2017) - Published 4 May, 2017

Colloids, Complex Fluids, and Active Matter

Nonmonotonic dynamic correlations in quasi-two-dimensional confined glass-forming liquids

Baicheng Mei, Yuyuan Lu, Lijia An, Hongfei Li, and Liang Wang

Phys. Rev. E 95, 050601(R) (2017) - Published 15 May, 2017

Granular Materials

Collisional dissipation rate in shearing flows of granular liquid crystals

Diego Berzi, Nha Thai-Quang, Yu Guo, and Jennifer Curtis

Phys. Rev. E 95, 050901(R) (2017) - Published 24 May, 2017

Fluid Dynamics

Mechanism of unconfined dust explosions: Turbulent clustering and radiation-induced ignition

Michael Liberman, Nathan Kleeorin, Igor Rogachevskii, and Nils Erland L. Haugen

Phys. Rev. E 95, 051101(R) (2017) - Published 12 May, 2017

Plasma Physics

Plasma high-order-harmonic generation from ultraintense laser pulses

Suo Tang, Naveen Kumar, and Christoph H. Keitel

Phys. Rev. E 95, 051201(R) (2017) - Published 8 May, 2017

Measurement of the shell decompression in direct-drive inertial-confinement-fusion implosions

D. T. Michel, S. X. Hu, A. K. Davis, V. Yu. Glebov, V. N. Goncharov, I. V. Igumenshchev, P. B. Radha, C. Stoeckl, and D. H. Froula

Phys. Rev. E 95, 051202(R) (2017) - Published 10 May, 2017

Computational Physics

Nearly maximally predictive features and their dimensions

Sarah E. Marzen and James P. Crutchfield

Phys. Rev. E 95, 051301(R) (2017) - Published 25 May, 2017

ARTICLES

Statistical Physics

Critical behavior of the two-dimensional Ising model with a slit

Xintian Wu

Phys. Rev. E 95, 052101 (2017) - Published 3 May, 2017

Lévy flights versus Lévy walks in bounded domains

Bartłomiej Dybiec, Ewa Gudowska-Nowak, Eli Barkai, and Alexander A. Dubkov

Phys. Rev. E 95, 052102 (2017) - Published 3 May, 2017

Multiple random walks on complex networks: A harmonic law predicts search time

Tongfeng Weng, Jie Zhang, Michael Small, and Pan Hui

Phys. Rev. E 95, 052103 (2017) - Published 3 May, 2017

Temperature distribution and heat radiation of patterned surfaces at short wavelengths

Thorsten Emig

Phys. Rev. E 95, 052104 (2017) - Published 3 May, 2017

One-dimensional irreversible aggregation with dynamics of a totally asymmetric simple exclusion process

N. Zh. Bunzarova and N. C. Pesheva

Phys. Rev. E 95, 052105 (2017) - Published 3 May, 2017

Dynamics of a mechanical system with multiple degrees of freedom out of thermal equilibrium

A. Feigel

Phys. Rev. E 95, 052106 (2017) - Published 4 May, 2017

Anomalous diffusion on a fractal mesh

Trifce Sandev, Alexander Iomin, and Holger Kantz

Phys. Rev. E 95, 052107 (2017) - Published 5 May, 2017

Asymptotic prime partitions of integers

Johann Bartel, R. K. Bhaduri, Matthias Brack, and M. V. N. Murthy

Phys. Rev. E 95, 052108 (2017) - Published 5 May, 2017

Kinetic percolation

W. R. Heinson, A. Chakrabarti, and C. M. Sorensen

Phys. Rev. E 95, 052109 (2017) - Published 5 May, 2017

Memory-induced diffusive-superdiffusive transition: Ensemble and time-averaged observables

Adrián A. Budini

Phys. Rev. E 95, 052110 (2017) - Published 8 May, 2017

Experimental investigations and phase-field simulations of triple-phase-separation kinetics within liquid ternary Co-Cu-Pb immiscible alloys

Y. H. Wu, W. L. Wang, N. Yan, and B. Wei

Phys. Rev. E 95, 052111 (2017) - Published 8 May, 2017

Composition law of κ-entropy for statistically independent systems

G. Kaniadakis, A. M. Scarfone, A. Sparavigna, and T. Wada

Phys. Rev. E 95, 052112 (2017) - Published 8 May, 2017

Viscosity of a classical gas: The rare-collision versus the frequent-collision regime

A. G. Magner, M. I. Gorenstein, and U. V. Grygoriev

Phys. Rev. E 95, 052113 (2017) - Published 8 May, 2017

Universal spatiotemporal scaling of distortions in a drifting lattice

Pritha Dolai, Abhik Basu, and Aditi Simha

Phys. Rev. E 95, 052115 (2017) - Published 10 May, 2017

Measuring effective temperatures in a generalized Gibbs ensemble

Laura Foini, Andrea Gambassi, Robert Konik, and Leticia F. Cugliandolo

Phys. Rev. E 95, 052116 (2017) - Published 11 May, 2017

Numerical study of the F model with domain-wall boundaries

Rick Keesman and Jules Lamers

Phys. Rev. E 95, 052117 (2017) - Published 11 May, 2017

Capturing Brownian dynamics with an on-lattice model of hard-sphere diffusion

Claudia Cianci, Stephen Smith, and Ramon Grima

Phys. Rev. E 95, 052118 (2017) - Published 11 May, 2017

Cavity master equation for the continuous time dynamics of discrete-spin models

E. Aurell, G. Del Ferraro, E. Domínguez, and R. Mulet

Phys. Rev. E 95, 052119 (2017) - Published 12 May, 2017

Similarity law for Widom lines and coexistence lines

D. T. Banuti, M. Raju, and M. Ihme

Phys. Rev. E 95, 052120 (2017) - Published 12 May, 2017

Global stability and H theorem in lattice models with nonconservative interactions

C. A. Plata and A. Prados

Phys. Rev. E 95, 052121 (2017) - Published 12 May, 2017

Breakdown of the Stokes-Einstein relation in pure Lennard-Jones fluids: From gas to liquid via supercritical states

Norikazu Ohtori, Shohei Miyamoto, and Yoshiki Ishii

Phys. Rev. E 95, 052122 (2017) - Published 12 May, 2017

Two coupled, driven Ising spin systems working as an engine

Debarshi Basu, Joydip Nandi, A. M. Jayannavar, and Rahul Marathe

Phys. Rev. E 95, 052123 (2017) - Published 12 May, 2017

Colored percolation

Sumanta Kundu and S. S. Manna

Phys. Rev. E 95, 052124 (2017) - Published 15 May, 2017

Large-scale structure of randomly jammed spheres

Atsushi Ikeda, Ludovic Berthier, and Giorgio Parisi

Phys. Rev. E 95, 052125 (2017) - Published 16 May, 2017

Variance of permutation entropy and the influence of ordinal pattern selection

Douglas J. Little and Deb M. Kane

Phys. Rev. E 95, 052126 (2017) - Published 16 May, 2017

Evolution of moments and correlations in nonrenewal escape-time processes

Wilhelm Braun, Rüdiger Thul, and André Longtin

Phys. Rev. E 95, 052127 (2017) - Published 16 May, 2017

Stationary engines in and beyond the linear response regime at the Carnot efficiency

Naoto Shiraishi

Phys. Rev. E 95, 052128 (2017) - Published 17 May, 2017

Finite-size corrections in the random assignment problem

Sergio Caracciolo, Matteo P. D'Achille, Enrico M. Malatesta, and Gabriele Sicuro

Phys. Rev. E 95, 052129 (2017) - Published 17 May, 2017

Diffusion-driven self-assembly of rodlike particles: Monte Carlo simulation on a square lattice

Nikolai I. Lebovka, Yuri Yu. Tarasevich, Volodymyr A. Gigiberiya, and Nikolai V. Vygornitskii

Phys. Rev. E 95, 052130 (2017) - Published 18 May, 2017

Entropy of diluted antiferromagnetic Ising models on frustrated lattices using the Wang-Landau method

Yuriy Shevchenko, Konstantin Nefedev, and Yutaka Okabe

Phys. Rev. E 95, 052132 (2017) - Published 22 May, 2017

Dual time scales in simulated annealing of a two-dimensional Ising spin glass

Shanon J. Rubin, Na Xu, and Anders W. Sandvik

Phys. Rev. E 95, 052133 (2017) - Published 22 May, 2017

Double diffusivity model under stochastic forcing

Amit K. Chattopadhyay and Elias C. Aifantis

Phys. Rev. E 95, 052134 (2017) - Published 22 May, 2017

Phase transitions at high energy vindicate negative microcanonical temperature

P. Buonsante, R. Franzosi, and A. Smerzi

Phys. Rev. E 95, 052135 (2017) - Published 22 May, 2017

Local time of Lévy random walks: A path integral approach

Václav Zatloukal

Phys. Rev. E 95, 052136 (2017) - Published 23 May, 2017

This paper uses a path-integral method to study the local time of random walks, i.e. the time spent in the vicinity of an arbitrary point. The author focuses on time-independent Hamiltonians where a connection between the local time and the resolvent of the Hamiltonian is shown, and studies in detail the special case of Levy flights

Work distributions for random sudden quantum quenches

Marcin Łobejko, Jerzy Łuczka, and Peter Talkner

Phys. Rev. E 95, 052137 (2017) - Published 23 May, 2017

Heat fluctuations of Brownian oscillators in nonstationary processes: Fluctuation theorem and condensation transition

A. Crisanti, A. Sarracino, and M. Zannetti

Phys. Rev. E 95, 052138 (2017) - Published 23 May, 2017

Nonscaling displacement distributions as may be seen in fluorescence correlation spectroscopy

S. M. J. Khadem and I. M. Sokolov

Phys. Rev. E 95, 052139 (2017) - Published 24 May, 2017

Effect of antifreeze protein on heterogeneous ice nucleation based on a two-dimensional random-field Ising model

Zhen Dong, Jianjun Wang, and Xin Zhou

Phys. Rev. E 95, 052140 (2017) - Published 25 May, 2017

Charge and spin current statistics of the open Hubbard model with weak coupling to the environment

Berislav Buča and Tomaž Prosen

Phys. Rev. E 95, 052141 (2017) - Published 25 May, 2017

Microscopic derivation of the hydrodynamics of active-Brownian-particle suspensions

Stefano Steffenoni, Gianmaria Falasco, and Klaus Kroy

Phys. Rev. E 95, 052142 (2017) - Published 25 May, 2017

Limiting the stroke of a Schmitt trigger with multiplicative noise

Gabriel A. Zarza, Sergio E. Mangioni, Javier Fernandez Acevedo, and Roberto R. Deza

Phys. Rev. E 95, 052143 (2017) - Published 25 May, 2017

Origin of the inverse energy cascade in two-dimensional quantum turbulence

Audun Skaugen and Luiza Angheluta

Phys. Rev. E 95, 052144 (2017) - Published 30 May, 2017

Condensation of Lee-Yang zeros in scalar field theory

N. G. Antoniou, F. K. Diakonos, X. N. Maintas, and C. E. Tsagkarakis

Phys. Rev. E 95, 052145 (2017) - Published 30 May, 2017

Six-vertex model and Schramm-Loewner evolution

Richard Kenyon, Jason Miller, Scott Sheffield, and David B. Wilson

Phys. Rev. E 95, 052146 (2017) - Published 30 May, 2017

Nondivergent and negative susceptibilities around critical points of a long-range Hamiltonian system with two order parameters

Yoshiyuki Y. Yamaguchi and Daiki Sawai

Phys. Rev. E 95, 052148 (2017) - Published 30 May, 2017

Localization in random bipartite graphs: Numerical and empirical study

František Slanina

Phys. Rev. E 95, 052149 (2017) - Published 30 May, 2017

Zero-temperature coarsening in the Ising model with asymmetric second-neighbor interactions in two dimensions

Pratik Mullick and Parongama Sen

Phys. Rev. E 95, 052150 (2017) - Published 30 May, 2017

Nonlinear Dynamics and Chaos

Reducing microwave absorption with fast frequency modulation

Juehang Qin and A. Hubler

Phys. Rev. E 95, 052201 (2017) - Published 2 May, 2017

Nonuniversality in the spectral properties of time-reversal-invariant microwave networks and quantum graphs

Barbara Dietz, Vitalii Yunko, Małgorzata Białous, Szymon Bauch, Michał Ławniczak, and Leszek Sirko

Phys. Rev. E 95, 052202 (2017) - Published 3 May, 2017

Qualitative changes in phase-response curve and synchronization at the saddle-node-loop bifurcation

Janina Hesse, Jan-Hendrik Schleimer, and Susanne Schreiber

Phys. Rev. E 95, 052203 (2017) - Published 3 May, 2017

Splitting in the pinning-depinning transition of fronts in long-delayed bistable systems

Francesco Marino, Giovanni Giacomelli, and Stephane Barland

Phys. Rev. E 95, 052204 (2017) - Published 4 May, 2017

Noise-induced transitions in a double-well excitable oscillator

Vladimir V. Semenov

Phys. Rev. E 95, 052205 (2017) - Published 5 May, 2017

Recurrence measure of conditional dependence and applications

Antônio M. T. Ramos, Alejandro Builes-Jaramillo, Germán Poveda, Bedartha Goswami, Elbert E. N. Macau, Jürgen Kurths, and Norbert Marwan

Phys. Rev. E 95, 052206 (2017) - Published 11 May, 2017

Hierarchical structure in sharply divided phase space for the piecewise linear map

Akira Akaishi, Kazuki Aoki, and Akira Shudo

Phys. Rev. E 95, 052207 (2017) - Published 11 May, 2017

Pattern formation in a reaction-diffusion system of Fitzhugh-Nagumo type before the onset of subcritical Turing bifurcation

Maxim Kuznetsov, Andrey Kolobov, and Andrey Polezhaev

Phys. Rev. E 95, 052208 (2017) - Published 12 May, 2017

Probability of noise- and rate-induced tipping

Paul Ritchie and Jan Sieber

Phys. Rev. E 95, 052209 (2017) - Published 12 May, 2017

Synchronization of fluctuating delay-coupled chaotic networks

Manuel Jiménez-Martín, Javier Rodríguez-Laguna, Otti D'Huys, Javier de la Rubia, and Elka Korutcheva

Phys. Rev. E 95, 052210 (2017) - Published 16 May, 2017

Dynamics of a bistable Miura-origami structure

Hongbin Fang, Suyi Li, Huimin Ji, and K. W. Wang

Phys. Rev. E 95, 052211 (2017) - Published 17 May, 2017

Spontaneous exchange of leader-laggard relationship in mutually coupled synchronized semiconductor lasers

Kazutaka Kanno, Takuya Hida, Atsushi Uchida, and Masatoshi Bunsen

Phys. Rev. E 95, 052212 (2017) - Published 17 May, 2017

Chaos in the band structure of a soft Sinai lattice

Max D. Porter, Aaron Barr, Ariel Barr, and L. E. Reichl

Phys. Rev. E 95, 052213 (2017) - Published 19 May, 2017

Localized dark solitons and vortices in defocusing media with spatially inhomogeneous nonlinearity

Jianhua Zeng and Boris A. Malomed

Phys. Rev. E 95, 052214 (2017) - Published 24 May, 2017

Intrinsic flow structure and multifractality in two-dimensional bacterial turbulence

Lipo Wang (王利坡) and Yongxiang Huang (黄永祥)

Phys. Rev. E 95, 052215 (2017) - Published 24 May, 2017

Two-dimensional localized chaotic patterns in parametrically driven systems

Deterlino Urzagasti, David Laroze, and Harald Pleiner

Phys. Rev. E 95, 052216 (2017) - Published 25 May, 2017

Dynamics of interacting electrons under effect of a Morse potential

J. L. L. dos Santos, M. O. Sales, A. Ranciaro Neto, and F. A. B. F. de Moura

Phys. Rev. E 95, 052217 (2017) - Published 30 May, 2017

Dynamics of spiral waves rotating around an obstacle and the existence of a minimal obstacle

Xiang Gao, Xia Feng, Teng-Chao Li, Shixian Qu, Xingang Wang, and Hong Zhang

Phys. Rev. E 95, 052218 (2017) - Published 30 May, 2017

Emergence of chaos in starlike networks of dissipative nonlinear oscillators by localized parametric excitations

R. Chacón, A. Martínez García-Hoz, and J. A. Martínez

Phys. Rev. E 95, 052219 (2017) - Published 30 May, 2017

Pattern of a confined chemical garden controlled by injection speed

Shu Wagatsuma, Takuro Higashi, Yutaka Sumino, and Ayumi Achiwa

Phys. Rev. E 95, 052220 (2017) - Published 31 May, 2017

Networks and Complex Systems

Simon's fundamental rich-get-richer model entails a dominant first-mover advantage

Peter Sheridan Dodds, David Rushing Dewhurst, Fletcher F. Hazlehurst, Colin M. Van Oort, Lewis Mitchell, Andrew J. Reagan, Jake Ryland Williams, and Christopher M. Danforth

Phys. Rev. E 95, 052301 (2017) - Published 1 May, 2017

Extortion provides alternative routes to the evolution of cooperation in structured populations

Xiongrui Xu, Zhihai Rong, Zhi-Xi Wu, Tao Zhou, and Chi Kong Tse

Phys. Rev. E 95, 052302 (2017) - Published 1 May, 2017

General expression for the component size distribution in infinite configuration networks

Ivan Kryven

Phys. Rev. E 95, 052303 (2017) - Published 2 May, 2017

Noise focusing in neuronal tissues: Symmetry breaking and localization in excitable networks with quenched disorder

Javier G. Orlandi and Jaume Casademunt

Phys. Rev. E 95, 052304 (2017) - Published 3 May, 2017

Optimal cost for strengthening or destroying a given network

Amikam Patron, Reuven Cohen, Daqing Li, and Shlomo Havlin

Phys. Rev. E 95, 052305 (2017) - Published 5 May, 2017

Social contagions on time-varying community networks

Mian-Xin Liu, Wei Wang, Ying Liu, Ming Tang, Shi-Min Cai, and Hai-Feng Zhang

Phys. Rev. E 95, 052306 (2017) - Published 9 May, 2017

Simple wealth distribution model causing inequality-induced crisis without external shocks

Henri Benisty

Phys. Rev. E 95, 052307 (2017) - Published 10 May, 2017

Language competition in a population of migrating agents

Dorota Lipowska and Adam Lipowski

Phys. Rev. E 95, 052308 (2017) - Published 11 May, 2017

Cyclic public goods games: Compensated coexistence among mutual cheaters stabilized by optimized penalty taxation

Christopher Griffin and Andrew Belmonte

Phys. Rev. E 95, 052309 (2017) - Published 11 May, 2017

Topology-dependent rationality and quantal response equilibria in structured populations

Sabin Roman and Markus Brede

Phys. Rev. E 95, 052310 (2017) - Published 11 May, 2017

Scale-free networks emerging from multifractal time series

Marcello A. Budroni, Andrea Baronchelli, and Romualdo Pastor-Satorras

Phys. Rev. E 95, 052311 (2017) - Published 16 May, 2017

Optimizing diffusion in multiplexes by maximizing layer dissimilarity

Alfredo B. Serrano, Jesús Gómez-Gardeñes, and Roberto F. S. Andrade

Phys. Rev. E 95, 052312 (2017) - Published 17 May, 2017

Minimum spanning tree filtering of correlations for varying time scales and size of fluctuations

Jarosław Kwapień, Paweł Oświęcimka, Marcin Forczek, and Stanisław Drożdż

Phys. Rev. E 95, 052313 (2017) - Published 17 May, 2017

Bounds of memory strength for power-law series

Fangjian Guo, Dan Yang, Zimo Yang, Zhi-Dan Zhao, and Tao Zhou

Phys. Rev. E 95, 052314 (2017) - Published 19 May, 2017

Interacting opinion and disease dynamics in multiplex networks: Discontinuous phase transition and nonmonotonic consensus times

Fátima Velásquez-Rojas and Federico Vazquez

Phys. Rev. E 95, 052315 (2017) - Published 22 May, 2017

Alliance formation with exclusion in the spatial public goods game

Attila Szolnoki and Xiaojie Chen

Phys. Rev. E 95, 052316 (2017) - Published 22 May, 2017

Epidemic extinction paths in complex networks

Jason Hindes and Ira B. Schwartz

Phys. Rev. E 95, 052317 (2017) - Published 25 May, 2017

Random walks on activity-driven networks with attractiveness

Laura Alessandretti, Kaiyuan Sun, Andrea Baronchelli, and Nicola Perra

Phys. Rev. E 95, 052318 (2017) - Published 25 May, 2017

Entropy of international trades

Chang-Young Oh and D.-S. Lee

Phys. Rev. E 95, 052319 (2017) - Published 25 May, 2017

Multiscale model for pedestrian and infection dynamics during air travel

Sirish Namilae, Pierrot Derjany, Anuj Mubayi, Mathew Scotch, and Ashok Srinivasan

Phys. Rev. E 95, 052320 (2017) - Published 31 May, 2017

Biological Physics

Torque and buckling in stretched intertwined double-helix DNAs

Sumitabha Brahmachari and John F. Marko

Phys. Rev. E 95, 052401 (2017) - Published 1 May, 2017

Designing nucleosomal force sensors

M. Tompitak, L. de Bruin, B. Eslami-Mossallam, and H. Schiessel

Phys. Rev. E 95, 052402 (2017) - Published 8 May, 2017

The authors used a recently developed computational method to design a model nucleosome in which the DNA strand remains stably wrapped around the eight proteins in the octamer when no force is applied, but quickly unwraps under external tension. The work suggests the possibility that DNA sequences may have evolved on real genomes to affect physical properties of the nucleosome.

Robustness of synthetic oscillators in growing and dividing cells

Joris Paijmans, David K. Lubensky, and Pieter Rein ten Wolde

Phys. Rev. E 95, 052403 (2017) - Published 8 May, 2017

Delayed bet-hedging resilience strategies under environmental fluctuations

Masaki Ogura, Masashi Wakaiki, Harvey Rubin, and Victor M. Preciado

Phys. Rev. E 95, 052404 (2017) - Published 10 May, 2017

Viral self-assembly pathway and mechanical stress relaxation

Martin Castelnovo

Phys. Rev. E 95, 052405 (2017) - Published 11 May, 2017

Stochastic lattice model of synaptic membrane protein domains

Yiwei Li, Osman Kahraman, and Christoph A. Haselwandter

Phys. Rev. E 95, 052406 (2017) - Published 16 May, 2017

Lateral diffusion induced by active proteins in a biomembrane

Yuto Hosaka, Kento Yasuda, Ryuichi Okamoto, and Shigeyuki Komura

Phys. Rev. E 95, 052407 (2017) - Published 16 May, 2017

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection

Nicholas Keller, Zachary T. Berndsen, Paul J. Jardine, and Douglas E. Smith

Phys. Rev. E 95, 052408 (2017) - Published 17 May, 2017

Analytical solution of the steady membrane voltage fluctuation caused by a single ion channel

Jia-Zeng Wang and Rui-Zhen Wang

Phys. Rev. E 95, 052409 (2017) - Published 17 May, 2017

Anticipated synchronization in neuronal circuits unveiled by a phase-response-curve analysis

Fernanda S. Matias, Pedro V. Carelli, Claudio R. Mirasso, and Mauro Copelli

Phys. Rev. E 95, 052410 (2017) - Published 22 May, 2017

Model of the best-of-N nest-site selection process in honeybees

Andreagiovanni Reina, James A. R. Marshall, Vito Trianni, and Thomas Bose

Phys. Rev. E 95, 052411 (2017) - Published 22 May, 2017

This paper presents a model for collective decision making applied to a swarm of honeybees choosing a nest. The authors tackle the extension of a known binary option model to an arbitrary number of choices, and study the situation when one option is better than the rest.

Symplectic and antiplectic waves in an array of beating cilia attached to a closed body

Aref Ghorbani and Ali Najafi

Phys. Rev. E 95, 052412 (2017) - Published 22 May, 2017

Torque-coupled thermodynamic model for FoF1-ATPase

Guangkuo Ai, Pengfei Liu, and Hao Ge

Phys. Rev. E 95, 052413 (2017) - Published 23 May, 2017

Actin growth profile in clathrin-mediated endocytosis

D. J. Tweten, P. V. Bayly, and A. E. Carlsson

Phys. Rev. E 95, 052414 (2017) - Published 23 May, 2017

Compressive elasticity of polydisperse biopolymer gels

Xinpeng Xu and Samuel A. Safran

Phys. Rev. E 95, 052415 (2017) - Published 25 May, 2017

β-Cyclodextrin polymer binding to DNA: Modulating the physicochemical parameters

J. C. B. Rocha, E. F. Silva, M. F. Oliveira, F. B. Sousa, A. V. N. C. Teixeira, and M. S. Rocha

Phys. Rev. E 95, 052416 (2017) - Published 25 May, 2017

Functional window of the avian compass

Vishvendra Singh Poonia, Kiran Kondabagil, Dipankar Saha, and Swaroop Ganguly

Phys. Rev. E 95, 052417 (2017) - Published 26 May, 2017

Uniform description of polymer ejection dynamics from capsid with and without hydrodynamics

J. Piili, P. M. Suhonen, and R. P. Linna

Phys. Rev. E 95, 052418 (2017) - Published 26 May, 2017

Measurements and simulations of microscopic damage to DNA in water by 30 keV electrons: A general approach applicable to other radiation sources and biological targets

Marc Benjamin Hahn, Susann Meyer, Hans-Jörg Kunte, Tihomir Solomun, and Heinz Sturm

Phys. Rev. E 95, 052419 (2017) - Published 30 May, 2017

Polymers

Exact solution for the force-extension relation of a semiflexible polymer under compression

Christina Kurzthaler and Thomas Franosch

Phys. Rev. E 95, 052501 (2017) - Published 4 May, 2017

Compressive response and helix formation of a semiflexible polymer confined in a nanochannel

Yumino Hayase, Takahiro Sakaue, and Hiizu Nakanishi

Phys. Rev. E 95, 052502 (2017) - Published 24 May, 2017

Measuring geometric frustration in twisted inextensible filament bundles

Andreea Panaitescu, Gregory M. Grason, and Arshad Kudrolli

Phys. Rev. E 95, 052503 (2017) - Published 31 May, 2017

Colloids, Complex Fluids, and Active Matter

Describing magnetorheology under a colloidal glass approach

J. P. Segovia-Gutiérrez, J. de Vicente, Antonio M. Puertas, and R. Hidalgo-Alvarez

Phys. Rev. E 95, 052601 (2017) - Published 1 May, 2017

Fluidization and wall slip of soft glassy materials by controlled surface roughness

Ladislav Derzsi, Daniele Filippi, Giampaolo Mistura, Matteo Pierno, Matteo Lulli, Mauro Sbragaglia, Massimo Bernaschi, and Piotr Garstecki

Phys. Rev. E 95, 052602 (2017) - Published 4 May, 2017

Recovery of mechanical pressure in a gas of underdamped active dumbbells with Brownian noise

Marc Joyeux

Phys. Rev. E 95, 052603 (2017) - Published 5 May, 2017

Role of the displacement current on Warburg-type behavior

I. Lelidis and G. Barbero

Phys. Rev. E 95, 052604 (2017) - Published 8 May, 2017

Tracer diffusion in active suspensions

Eric W. Burkholder and John F. Brady

Phys. Rev. E 95, 052605 (2017) - Published 9 May, 2017

Contractile actuation and dynamical gel assembly of paramagnetic filaments in fast precessing fields

Joshua M. Dempster, Pablo Vázquez-Montejo, and Monica Olvera de la Cruz

Phys. Rev. E 95, 052606 (2017) - Published 12 May, 2017

Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids

An T. Pham, Yuan Zhuang, Paige Detwiler, Joshua E. S. Socolar, Patrick Charbonneau, and Benjamin B. Yellen

Phys. Rev. E 95, 052607 (2017) - Published 12 May, 2017

Study of dynamic heterogeneity of an active particle system

Huai Ding, Huijun Jiang, and Zhonghuai Hou

Phys. Rev. E 95, 052608 (2017) - Published 24 May, 2017

Liquid Crystals

Diffusion of chiral molecules and propagation of structural chirality in anisotropic liquids

Mireille Quémener, Tigran Galstian, Thomas Marmin, Victoria Laroche, and Yves L. Dory

Phys. Rev. E 95, 052701 (2017) - Published 10 May, 2017

Role of length polydispersity in the phase behavior of freely rotating hard-rectangle fluids

Ariel Díaz-De Armas and Yuri Martínez-Ratón

Phys. Rev. E 95, 052702 (2017) - Published 22 May, 2017

Heterogeneous colloidal particles immersed in a liquid crystal

Setarehalsadat Changizrezaei and Colin Denniston

Phys. Rev. E 95, 052703 (2017) - Published 30 May, 2017

Influence of liquid crystalline phases on the tunability of a random laser

José Trull, Josep Salud, Sergio Diez-Berart, and David O. López

Phys. Rev. E 95, 052704 (2017) - Published 30 May, 2017

Highly efficient optical director reorientation of liquid-crystalline polymer induced by dye additives

I. A. Budagovsky, V. N. Ochkin, S. A. Shvetsov, A. S. Zolot'ko, A. Yu. Bobrovsky, N. I. Boiko, and V. P. Shibaev

Phys. Rev. E 95, 052705 (2017) - Published 31 May, 2017

Comparative study of the anchoring strength of reactive mesogens and industrial polyimides used for the alignment of liquid crystals

T. Sergan, I. Dozov, V. Sergan, and R. Voss

Phys. Rev. E 95, 052706 (2017) - Published 31 May, 2017

Films and Interfaces

Hydrodynamic theory of freezing: Nucleation and polycrystalline growth

Frigyes Podmaniczky, Gyula I. Tóth, György Tegze, and László Gránásy

Phys. Rev. E 95, 052801 (2017) - Published 4 May, 2017

Spreading law on a completely wettable spherical substrate: The energy balance approach

Masao Iwamatsu

Phys. Rev. E 95, 052802 (2017) - Published 12 May, 2017

Enhanced drainage and thinning of liquid films between bubbles and solids that support surface waves

Amihai Horesh, Matvey Morozov, and Ofer Manor

Phys. Rev. E 95, 052803 (2017) - Published 22 May, 2017

Relation between the porosity and tortuosity of a membrane formed by disconnected irregular pores and the spatial diffusion coefficient of the Fick-Jacobs model

Aldo Ledesma-Durán, S. I. Hernández, and Iván Santamaría-Holek

Phys. Rev. E 95, 052804 (2017) - Published 22 May, 2017

Contact angles of a drop pinned on an incline

Joël De Coninck, François Dunlop, and Thierry Huillet

Phys. Rev. E 95, 052805 (2017) - Published 25 May, 2017

Granular Materials

General scaling relations for locomotion in granular media

James Slonaker, D. Carrington Motley, Qiong Zhang, Stephen Townsend, Carmine Senatore, Karl Iagnemma, and Ken Kamrin

Phys. Rev. E 95, 052901 (2017) - Published 10 May, 2017

The authors find scaling relations that describe locomotion in granular media for a wide range of problems. Experimental tests and simulations demonstrate the validity of their simple model for rigid wheels of various shapes. An extension to different gravitational environments provides a model relevant for space exploration.

Statistical characterization of microstructure of packings of polydisperse hard cubes

Hessam Malmir, Muhammad Sahimi, and M. Reza Rahimi Tabar

Phys. Rev. E 95, 052902 (2017) - Published 22 May, 2017

Shear banding, discontinuous shear thickening, and rheological phase transitions in athermally sheared frictionless disks

Daniel Vågberg, Peter Olsson, and S. Teitel

Phys. Rev. E 95, 052903 (2017) - Published 30 May, 2017

This paper presents a model of the flow behavior of granular soft materials under shear. The authors introduce a tangentially directed viscous interaction, along with a contact force, and study a two-dimensional athermal system using computer simulations. Their results show a distinctive transition in the system’s rheological behavior which, in turn, may give rise to shear banding.

Role of particle size in the kinematic properties of silo flow

Diego Gella, Diego Maza, and Iker Zuriguel

Phys. Rev. E 95, 052904 (2017) - Published 31 May, 2017

Affine and topological structural entropies in granular statistical mechanics: Explicit calculations and equation of state

Shahar Amitai and Raphael Blumenfeld

Phys. Rev. E 95, 052905 (2017) - Published 31 May, 2017

Solid Mechanics

Coarse graining atomistic simulations of plastically deforming amorphous solids

Adam R. Hinkle, Chris H. Rycroft, Michael D. Shields, and Michael L. Falk

Phys. Rev. E 95, 053001 (2017) - Published 5 May, 2017

Strain tensor selection and the elastic theory of incompatible thin sheets

Oz Oshri and Haim Diamant

Phys. Rev. E 95, 053003 (2017) - Published 16 May, 2017

Crack propagation through disordered materials as a depinning transition: A critical test of the theory

Laurent Ponson and Nadjime Pindra

Phys. Rev. E 95, 053004 (2017) - Published 30 May, 2017

Time-dependent breakdown of fiber networks: Uncertainty of lifetime

Amanda Mattsson and Tetsu Uesaka

Phys. Rev. E 95, 053005 (2017) - Published 30 May, 2017

Fluid Dynamics

Stability of viscous film flow coating the interior of a vertical tube with a porous wall

Rong Liu and Zijing Ding

Phys. Rev. E 95, 053101 (2017) - Published 1 May, 2017

Mean-Lagrangian formalism and covariance of fluid turbulence

Taketo Ariki

Phys. Rev. E 95, 053102 (2017) - Published 4 May, 2017

Wave propagation reversal for wavy vortices in wide-gap counter-rotating cylindrical Couette flow

S. Altmeyer and Richard M. Lueptow

Phys. Rev. E 95, 053103 (2017) - Published 10 May, 2017

Radiation dynamics of a cavitation bubble in a liquid-filled cavity surrounded by an elastic solid

Catherine Drysdale, Alexander A. Doinikov, and Philippe Marmottant

Phys. Rev. E 95, 053104 (2017) - Published 10 May, 2017

Numerical simulations of vesicle and bubble dynamics in two-dimensional four-roll mill flows

Yongsam Kim, Ming-Chih Lai, and Yunchang Seol

Phys. Rev. E 95, 053105 (2017) - Published 10 May, 2017

Plateau-Rayleigh instability in solids is a simple phase separation

Chen Xuan and John Biggins

Phys. Rev. E 95, 053106 (2017) - Published 11 May, 2017

Hydrodynamics of viscous inhalant flows

Aaron C. True and John P. Crimaldi

Phys. Rev. E 95, 053107 (2017) - Published 17 May, 2017

Finite-thickness effects on the Rayleigh-Taylor instability in accelerated elastic solids

S. A. Piriz, A. R. Piriz, and N. A. Tahir

Phys. Rev. E 95, 053108 (2017) - Published 17 May, 2017

Relaxation of twist helicity in the cascade process of linked quantum vortices

Simone Zuccher and Renzo L. Ricca

Phys. Rev. E 95, 053109 (2017) - Published 18 May, 2017

Taylor cone and electrospraying at a free surface of superfluid helium charged from below

P. Moroshkin, P. Leiderer, Th. B. Möller, and K. Kono

Phys. Rev. E 95, 053110 (2017) - Published 19 May, 2017

Wetting and dewetting processes in the axial retraction of liquid filaments

Pablo D. Ravazzoli, Ingrith Cuellar, Alejandro G. González, and Javier A. Diez

Phys. Rev. E 95, 053111 (2017) - Published 24 May, 2017

Evidence for equivalence of diffusion processes of passive scalar and magnetic fields in anisotropic Navier-Stokes turbulence

E. Jurčišinová and M. Jurčišin

Phys. Rev. E 95, 053112 (2017) - Published 24 May, 2017

Experimental velocity study of non-Boussinesq Rayleigh-Bénard convection

Valentina Valori, Gerrit Elsinga, Martin Rohde, Mark Tummers, Jerry Westerweel, and Tim van der Hagen

Phys. Rev. E 95, 053113 (2017) - Published 25 May, 2017

Thermal Rayleigh-Marangoni convection in a three-layer liquid-metal-battery model

Thomas Köllner, Thomas Boeck, and Jörg Schumacher

Phys. Rev. E 95, 053114 (2017) - Published 25 May, 2017

Effect of axial electric field on the Rayleigh instability at small length scales

Darshak K. Bhuptani and Sarith P. Sathian

Phys. Rev. E 95, 053115 (2017) - Published 26 May, 2017

Completeness of inertial modes of an incompressible inviscid fluid in a corotating ellipsoid

George Backus and Michel Rieutord

Phys. Rev. E 95, 053116 (2017) - Published 30 May, 2017

Hydrodynamic mobility of a solid particle near a spherical elastic membrane. II. Asymmetric motion

Abdallah Daddi-Moussa-Ider, Maciej Lisicki, and Stephan Gekle

Phys. Rev. E 95, 053117 (2017) - Published 31 May, 2017

Plasma Physics

Fully kinetic simulation study of ion-acoustic solitons in the presence of trapped electrons

S. M. Hosseini Jenab and F. Spanier

Phys. Rev. E 95, 053201 (2017) - Published 2 May, 2017

Instabilities in bilayer complex plasmas: Wake-induced mode coupling

A. V. Ivlev and R. Kompaneets

Phys. Rev. E 95, 053202 (2017) - Published 3 May, 2017

Electrostatic Debye layer formed at a plasma-liquid interface

Paul Rumbach, Jean Pierre Clarke, and David B. Go

Phys. Rev. E 95, 053203 (2017) - Published 5 May, 2017

Magnetohydrodynamics of laser-produced high-energy-density plasma in a strong external magnetic field

Kazuki Matsuo, Hideo Nagatomo, Zhe Zhang, Philippe Nicolai, Takayoshi Sano, Shohei Sakata, Sadaoki Kojima, Seung Ho Lee, King Fai Farley Law, Yasunobu Arikawa, Youichi Sakawa, Taichi Morita, Yasuhiro Kuramitsu, Shinsuke Fujioka, and Hiroshi Azechi

Phys. Rev. E 95, 053204 (2017) - Published 9 May, 2017

Production of high-angular-momentum electron beams in laser-plasma interactions

L. B. Ju, C. T. Zhou, T. W. Huang, K. Jiang, H. Zhang, S. Z. Wu, B. Qiao, and S. C. Ruan

Phys. Rev. E 95, 053205 (2017) - Published 9 May, 2017

Two-dimensional implosion simulations with a kinetic particle code

I. Sagert, W. P. Even, and T. T. Strother

Phys. Rev. E 95, 053206 (2017) - Published 17 May, 2017

Freak oscillation in a dusty plasma

Heng Zhang, Yang Yang, Xue-Ren Hong, Xin Qi, Wen-Shan Duan, and Lei Yang

Phys. Rev. E 95, 053207 (2017) - Published 18 May, 2017

Measurements of ionization states in warm dense aluminum with betatron radiation

M. Z. Mo, Z. Chen, S. Fourmaux, A. Saraf, S. Kerr, K. Otani, R. Masoud, J.-C. Kieffer, Y. Tsui, A. Ng, and R. Fedosejevs

Phys. Rev. E 95, 053208 (2017) - Published 19 May, 2017

Bremsstrahlung from the interaction of short laser pulses with dielectrics

G. M. Petrov, J. P. Palastro, and J. Peñano

Phys. Rev. E 95, 053209 (2017) - Published 22 May, 2017

Simultaneous influence of helicity and compressibility on anomalous scaling of the magnetic field in the Kazantsev-Kraichnan model

E. Jurčišinová, M. Jurčišin, and M. Menkyna

Phys. Rev. E 95, 053210 (2017) - Published 22 May, 2017

Optimization of plasma amplifiers

James D. Sadler, Raoul M. G. M. Trines, Max Tabak, Dan Haberberger, Dustin H. Froula, Andrew S. Davies, Sara Bucht, Luís O. Silva, E. Paulo Alves, Frederico Fiúza, Luke Ceurvorst, Naren Ratan, Muhammad F. Kasim, Robert Bingham, and Peter A. Norreys

Phys. Rev. E 95, 053211 (2017) - Published 24 May, 2017

Kinetic simulations of ladder climbing by electron plasma waves

Kentaro Hara, Ido Barth, Erez Kaminski, I. Y. Dodin, and N. J. Fisch

Phys. Rev. E 95, 053212 (2017) - Published 25 May, 2017

Computational Physics

Extended lattice Boltzmann scheme for droplet combustion

Mostafa Ashna, Mohammad Hassan Rahimian, and Abbas Fakhari

Phys. Rev. E 95, 053301 (2017) - Published 1 May, 2017

Grain coarsening in two-dimensional phase-field models with an orientation field

Bálint Korbuly, Tamás Pusztai, Hervé Henry, Mathis Plapp, Markus Apel, and László Gránásy

Phys. Rev. E 95, 053303 (2017) - Published 9 May, 2017

Towards a unified lattice kinetic scheme for relativistic hydrodynamics

A. Gabbana, M. Mendoza, S. Succi, and R. Tripiccione

Phys. Rev. E 95, 053304 (2017) - Published 11 May, 2017

Surprising convergence of the Monte Carlo renormalization group for the three-dimensional Ising model

Dorit Ron, Achi Brandt, and Robert H. Swendsen

Phys. Rev. E 95, 053305 (2017) - Published 16 May, 2017

Evaluating the morphological completeness of a training image

Mingliang Gao, Qizhi Teng, Xiaohai He, Junxi Feng, and Xue Han

Phys. Rev. E 95, 053306 (2017) - Published 18 May, 2017

Implementation of dual time-stepping strategy of the gas-kinetic scheme for unsteady flow simulations

Ji Li, Chengwen Zhong, Yong Wang, and Congshan Zhuo

Phys. Rev. E 95, 053307 (2017) - Published 26 May, 2017

Multidimensional Chebyshev interpolation for warm and hot dense matter

Gérald Faussurier and Christophe Blancard

Phys. Rev. E 95, 053308 (2017) - Published 30 May, 2017

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