Volume 80, Issue 3

September 2009

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HIGHLIGHTED ARTICLES

FEATURED IN PHYSICS

Enhanced mixing and spatial instability in concentrated bacterial suspensions

Andrey Sokolov, Raymond E. Goldstein, Felix I. Feldchtein, and Igor S. Aranson

Phys. Rev. E 80, 031903 (2009) - Published 10 September, 2009

RAPID COMMUNICATIONS

Statistical physics

RAPID COMMUNICATION

Suppression of thermally activated escape by heating

Sebastian Getfert and Peter Reimann

Phys. Rev. E 80, 030101(R) (2009) - Published 4 September, 2009

RAPID COMMUNICATION

Shared information in stationary states of stochastic processes

F. C. Alcaraz, V. Rittenberg, and G. Sierra

Phys. Rev. E 80, 030102(R) (2009) - Published 8 September, 2009

RAPID COMMUNICATION

Solutions of renormalization-group flow equations with full momentum dependence

F. Benitez, J.-P. Blaizot, H. Chaté, B. Delamotte, R. Méndez-Galain, and N. Wschebor

Phys. Rev. E 80, 030103(R) (2009) - Published 9 September, 2009

RAPID COMMUNICATION

Multiplicative noise induces zero critical frequency

Y. Peleg and E. Barkai

Phys. Rev. E 80, 030104(R) (2009) - Published 14 September, 2009

RAPID COMMUNICATION

Non-Gaussian tails in the probability distribution function of heat exchanged during isothermal stretching of aluminum and gold nanowires

L. Pastor-Abia, M. J. Caturla, E. SanFabián, G. Chiappe, and E. Louis

Phys. Rev. E 80, 030105(R) (2009) - Published 15 September, 2009

RAPID COMMUNICATION

Phase instability and coarsening in two dimensions

Chaouqi Misbah and Paolo Politi

Phys. Rev. E 80, 030106(R) (2009) - Published 15 September, 2009

RAPID COMMUNICATION

Target annihilation by diffusing particles in inhomogeneous geometries

Davide Cassi

Phys. Rev. E 80, 030107(R) (2009) - Published 16 September, 2009

Granular materials

RAPID COMMUNICATION

Crossover transition in flowing granular chains

Xialing Ulrich, Eliot Fried, and Amy Q. Shen

Phys. Rev. E 80, 030301(R) (2009) - Published 14 September, 2009

Colloidal dispersions, suspensions, and aggregates

RAPID COMMUNICATION

Scenario for equilibrium solid-stabilized emulsions

Willem K. Kegel and Jan Groenewold

Phys. Rev. E 80, 030401(R) (2009) - Published 8 September, 2009

Liquid crystals

RAPID COMMUNICATION

Structure studies of the nematic phase formed by bent-core molecules

N. Vaupotič, J. Szydlowska, M. Salamonczyk, A. Kovarova, J. Svoboda, M. Osipov, D. Pociecha, and E. Gorecka

Phys. Rev. E 80, 030701(R) (2009) - Published 29 September, 2009

Polymers

RAPID COMMUNICATION

Deformation mechanism of nanocomposite gels studied by contrast variation small-angle neutron scattering

Toshihiko Nishida, Hitoshi Endo, Noboru Osaka, Huan-jun Li, Kazutoshi Haraguchi, and Mitsuhiro Shibayama

Phys. Rev. E 80, 030801(R) (2009) - Published 14 September, 2009

Biological physics

RAPID COMMUNICATION

$λ$ -prophage induction modeled as a cooperative failure mode of lytic repression

Nicholas Chia, Ido Golding, and Nigel Goldenfeld

Phys. Rev. E 80, 030901(R) (2009) - Published 1 September, 2009

RAPID COMMUNICATION

Robust ecological pattern formation induced by demographic noise

Thomas Butler and Nigel Goldenfeld

Phys. Rev. E 80, 030902(R) (2009) - Published 15 September, 2009

RAPID COMMUNICATION

Cells, cancer, and rare events: Homeostatic metastability in stochastic nonlinear dynamical models of skin cell proliferation

Patrick B. Warren

Phys. Rev. E 80, 030903(R) (2009) - Published 22 September, 2009

RAPID COMMUNICATION

Free-running period of neurons in the suprachiasmatic nucleus: Its dependence on the distribution of neuronal coupling strengths

Changgui Gu, Jianxiong Wang, and Zonghua Liu

Phys. Rev. E 80, 030904(R) (2009) - Published 30 September, 2009

ARTICLES

Statistical physics

Investigating quantum transport with an initial value representation of the semiclassical propagator

Christoph-Marian Goletz, Frank Grossmann, and Steven Tomsovic

Phys. Rev. E 80, 031101 (2009) - Published 2 September, 2009

Coarse-graining the dynamics of a driven interface in the presence of mobile impurities: Effective description via diffusion maps

Benjamin E. Sonday, Mikko Haataja, and Ioannis G. Kevrekidis

Phys. Rev. E 80, 031102 (2009) - Published 3 September, 2009

Arbitrary-order corrections for finite-time drift and diffusion coefficients

C. Anteneodo and R. Riera

Phys. Rev. E 80, 031103 (2009) - Published 3 September, 2009

Critical behavior of the Ising model on the four-dimensional cubic lattice

P. H. Lundow and K. Markström

Phys. Rev. E 80, 031104 (2009) - Published 3 September, 2009

Interactions leading to disordered ground states and unusual low-temperature behavior

Robert D. Batten, Frank H. Stillinger, and Salvatore Torquato

Phys. Rev. E 80, 031105 (2009) - Published 4 September, 2009

Mapping of forced diffusion in quasi-one-dimensional systems

Pavol Kalinay

Phys. Rev. E 80, 031106 (2009) - Published 4 September, 2009

Explicit solution of the optimal fluctuation problem for an elastic string in a random medium

I. V. Kolokolov and S. E. Korshunov

Phys. Rev. E 80, 031107 (2009) - Published 4 September, 2009

Einstein relation and effective temperature for systems with quenched disorder

Z. Shemer and E. Barkai

Phys. Rev. E 80, 031108 (2009) - Published 9 September, 2009

Closure-based perturbative density-functional theory of hard-sphere freezing: Properties of the bridge functional

Anurag Verma and David M. Ford

Phys. Rev. E 80, 031109 (2009) - Published 9 September, 2009

Bistable-monostable transition in the Ising model on two connected complex networks

Krzysztof Suchecki and Janusz A. Hołyst

Phys. Rev. E 80, 031110 (2009) - Published 9 September, 2009

Characteristic of Bennett’s acceptance ratio method

Aljoscha M. Hahn and Holger Then

Phys. Rev. E 80, 031111 (2009) - Published 10 September, 2009

Continuous-time random walk with correlated waiting times

Aleksei V. Chechkin, Michael Hofmann, and Igor M. Sokolov

Phys. Rev. E 80, 031112 (2009) - Published 10 September, 2009

Lévy flights in confining potentials

Piotr Garbaczewski and Vladimir Stephanovich

Phys. Rev. E 80, 031113 (2009) - Published 10 September, 2009

Polymer growth through radical polymerization and termination

Shun-You Yang, Sheng-Qing Zhu, and Jianhong Ke

Phys. Rev. E 80, 031114 (2009) - Published 10 September, 2009

Phase transition in a long-range antiferromagnetic model

Anindita Ganguli and Subinay Dasgupta

Phys. Rev. E 80, 031115 (2009) - Published 10 September, 2009

Extended defects in the Potts-percolation model of a solid: Renormalization group and Monte Carlo analysis

H. T. Diep and Miron Kaufman

Phys. Rev. E 80, 031116 (2009) - Published 14 September, 2009

Stochastic analysis of dimerization systems

Baruch Barzel and Ofer Biham

Phys. Rev. E 80, 031117 (2009) - Published 16 September, 2009

Theory of single-file multiparticle diffusion in narrow pores

Valery N. Kharkyanen and Semen O. Yesylevskyy

Phys. Rev. E 80, 031118 (2009) - Published 16 September, 2009

Finite-size effects in presence of gravity: The behavior of the susceptibility in ${}^{3}H e$ and ${}^{4}H e$ films near the liquid-vapor critical point

Daniel Dantchev, Joseph Rudnick, and M. Barmatz

Phys. Rev. E 80, 031119 (2009) - Published 16 September, 2009

Glassy properties of frustrated arrays of nonlinear devices

A. J. Fendrik, L. Romanelli, and R. P. J. Perazzo

Phys. Rev. E 80, 031120 (2009) - Published 16 September, 2009

Geometry of phase separation

Alberto Sicilia, Yoann Sarrazin, Jeferson J. Arenzon, Alan J. Bray, and Leticia F. Cugliandolo

Phys. Rev. E 80, 031121 (2009) - Published 16 September, 2009

Dynamics of a microorganism moving by chemotaxis in its own secretion

Ankush Sengupta, Sven van Teeffelen, and Hartmut Löwen

Phys. Rev. E 80, 031122 (2009) - Published 17 September, 2009

Topology, symmetry, phase transitions, and noncollinear spin structures

F. A. N. Santos and M. D. Coutinho-Filho

Phys. Rev. E 80, 031123 (2009) - Published 17 September, 2009

Dynamic scaling functions and amplitude ratios of stochastic models with energy conservation above $T_{c}$

M. Dudka, R. Folk, and G. Moser

Phys. Rev. E 80, 031124 (2009) - Published 17 September, 2009

Random walks on deterministic scale-free networks: Exact results

E. Agliari and R. Burioni

Phys. Rev. E 80, 031125 (2009) - Published 17 September, 2009

Critical exponents from cluster coefficients

Z. Rotman and E. Eisenberg

Phys. Rev. E 80, 031126 (2009) - Published 18 September, 2009

Kramers-Moyal coefficients in the analysis and modeling of heart rate variability

M. Petelczyc, J. J. Żebrowski, and R. Baranowski

Phys. Rev. E 80, 031127 (2009) - Published 18 September, 2009

Rocking feedback-controlled ratchets

M. Feito, J. P. Baltanás, and F. J. Cao

Phys. Rev. E 80, 031128 (2009) - Published 21 September, 2009

Long delay times in reaction rates increase intrinsic fluctuations

Matthew Scott

Phys. Rev. E 80, 031129 (2009) - Published 22 September, 2009

Dissipative dynamics of a harmonic oscillator: A nonperturbative approach

Jishad Kumar, S. Sinha, and P. A. Sreeram

Phys. Rev. E 80, 031130 (2009) - Published 22 September, 2009

Nonequilibrium thermodynamics of driven amorphous materials. I. Internal degrees of freedom and volume deformation

Eran Bouchbinder and J. S. Langer

Phys. Rev. E 80, 031131 (2009) - Published 22 September, 2009

Nonequilibrium thermodynamics of driven amorphous materials. II. Effective-temperature theory

Eran Bouchbinder and J. S. Langer

Phys. Rev. E 80, 031132 (2009) - Published 22 September, 2009

Nonequilibrium thermodynamics of driven amorphous materials. III. Shear-transformation-zone plasticity

Eran Bouchbinder and J. S. Langer

Phys. Rev. E 80, 031133 (2009) - Published 22 September, 2009

Thermal breakage of a discrete one-dimensional string

Chiu Fan Lee (李超帆)

Phys. Rev. E 80, 031134 (2009) - Published 23 September, 2009

Site-diluted Ising model in four dimensions

A. Gordillo-Guerrero, R. Kenna, and J. J. Ruiz-Lorenzo

Phys. Rev. E 80, 031135 (2009) - Published 23 September, 2009

One-dimensional hard-point gas as a thermoelectric engine

Jiao Wang, Giulio Casati, Tomaž Prosen, and C.-H. Lai

Phys. Rev. E 80, 031136 (2009) - Published 24 September, 2009

Geometric and projection effects in Kramers-Moyal analysis

Steven J. Lade

Phys. Rev. E 80, 031137 (2009) - Published 24 September, 2009

Equilibrium properties of disordered spin models with two-scale interactions

Jack Raymond and David Saad

Phys. Rev. E 80, 031138 (2009) - Published 24 September, 2009

Equilibrium long-ranged charge correlations at the interface between media coupled to the electromagnetic radiation

Bernard Jancovici and Ladislav Šamaj

Phys. Rev. E 80, 031139 (2009) - Published 25 September, 2009

Soft random solids and their heterogeneous elasticity

Xiaoming Mao, Paul M. Goldbart, Xiangjun Xing, and Annette Zippelius

Phys. Rev. E 80, 031140 (2009) - Published 25 September, 2009

Harmonic measure for critical Potts clusters

D. A. Adams, Yen Ting Lin, L. M. Sander, and R. M. Ziff

Phys. Rev. E 80, 031141 (2009) - Published 28 September, 2009

Competition between multiple totally asymmetric simple exclusion processes for a finite pool of resources

L. Jonathan Cook, R. K. P. Zia, and B. Schmittmann

Phys. Rev. E 80, 031142 (2009) - Published 28 September, 2009

Stochastic Langevin equations: Markovian and non-Markovian dynamics

R. L. S. Farias, Rudnei O. Ramos, and L. A. da Silva

Phys. Rev. E 80, 031143 (2009) - Published 28 September, 2009

Reducing the heterogeneity of payoffs: An effective way to promote cooperation in the prisoner’s dilemma game

Luo-Luo Jiang (姜罗罗), Ming Zhao (赵明), Han-Xin Yang (杨涵新), Joseph Wakeling, Bing-Hong Wang (汪秉宏), and Tao Zhou (周涛)

Phys. Rev. E 80, 031144 (2009) - Published 28 September, 2009

Finite bath fluctuation theorem

Michele Campisi, Peter Talkner, and Peter Hänggi

Phys. Rev. E 80, 031145 (2009) - Published 28 September, 2009

Robustness of optimal intermittent search strategies in one, two, and three dimensions

C. Loverdo, O. Bénichou, M. Moreau, and R. Voituriez

Phys. Rev. E 80, 031146 (2009) - Published 30 September, 2009

Noise-induced escape from bifurcating attractors: Symplectic approach in the weak-noise limit

Jonathan Demaeyer and Pierre Gaspard

Phys. Rev. E 80, 031147 (2009) - Published 30 September, 2009

Continuous-time multidimensional Markovian description of Lévy walks

Ihor Lubashevsky, Rudolf Friedrich, and Andreas Heuer

Phys. Rev. E 80, 031148 (2009) - Published 30 September, 2009

Granular materials

Measurement of granular entropy

Sean McNamara, Patrick Richard, Sébastien Kiesgen de Richter, Gérard Le Caër, and Renaud Delannay

Phys. Rev. E 80, 031301 (2009) - Published 10 September, 2009

Unsteady granular flows in a rotating tumbler

Nicholas A. Pohlman, Julio M. Ottino, and Richard M. Lueptow

Phys. Rev. E 80, 031302 (2009) - Published 10 September, 2009

Pulse propagation in tapered granular chains: An analytic study

Upendra Harbola, Alexandre Rosas, Massimiliano Esposito, and Katja Lindenberg

Phys. Rev. E 80, 031303 (2009) - Published 15 September, 2009

Orientational ordering in sheared inelastic dumbbells

K. Anki Reddy, V. Kumaran, and J. Talbot

Phys. Rev. E 80, 031304 (2009) - Published 24 September, 2009

Physical test of a particle simulation model in a sheared granular system

Chris H. Rycroft, Ashish V. Orpe, and Arshad Kudrolli

Phys. Rev. E 80, 031305 (2009) - Published 24 September, 2009

Dilute wet granular particles: Nonequilibrium dynamics and structure formation

Stephan Ulrich, Timo Aspelmeier, Annette Zippelius, Klaus Roeller, Axel Fingerle, and Stephan Herminghaus

Phys. Rev. E 80, 031306 (2009) - Published 24 September, 2009

Colloidal dispersions, suspensions, and aggregates

Contact and stress anisotropies in start-up flow of colloidal suspensions

Nicos S. Martys, Didier Lootens, William George, and Pascal Hébraud

Phys. Rev. E 80, 031401 (2009) - Published 11 September, 2009

Supersaturated dispersions of rodlike viruses with added attraction

P. Holmqvist, M. Ratajczyk, G. Meier, H. H. Wensink, and M. P. Lettinga

Phys. Rev. E 80, 031402 (2009) - Published 21 September, 2009

Scattering information obtained by optical microscopy: Differential dynamic microscopy and beyond

Fabio Giavazzi, Doriano Brogioli, Veronique Trappe, Tommaso Bellini, and Roberto Cerbino

Phys. Rev. E 80, 031403 (2009) - Published 21 September, 2009

Ground state structures in ferrofluid monolayers

Taisia A. Prokopieva, Victor A. Danilov, Sofia S. Kantorovich, and Christian Holm

Phys. Rev. E 80, 031404 (2009) - Published 29 September, 2009

Structured and complex fluids

Phase behavior of the hard-sphere Maier-Saupe fluid under spatial confinement

N. G. Almarza, C. Martín, and E. Lomba

Phys. Rev. E 80, 031501 (2009) - Published 3 September, 2009

Anomalous phase behavior of a soft-repulsive potential with a strictly monotonic force

Franz Saija, Santi Prestipino, and Gianpietro Malescio

Phys. Rev. E 80, 031502 (2009) - Published 10 September, 2009

Universality in multicomponent glass-forming liquids near the glass transition

Michio Tokuyama

Phys. Rev. E 80, 031503 (2009) - Published 11 September, 2009

Films, interfaces, and crystal growth

Self-organized dendritic sidebranching in directional solidification: Sidebranch coherence within uncorrelated bursts

Alain Pocheau, Simona Bodea, and Marc Georgelin

Phys. Rev. E 80, 031601 (2009) - Published 3 September, 2009

Thermodynamics of bcc metals in phase-field-crystal models

A. Jaatinen, C. V. Achim, K. R. Elder, and T. Ala-Nissila

Phys. Rev. E 80, 031602 (2009) - Published 9 September, 2009

Quantized liquid density-functional theory for hydrogen adsorption in nanoporous materials

Serguei Patchkovskii and Thomas Heine

Phys. Rev. E 80, 031603 (2009) - Published 16 September, 2009

Condensation-induced jumping water drops

R. D. Narhe, M. D. Khandkar, P. B. Shelke, A. V. Limaye, and D. A. Beysens

Phys. Rev. E 80, 031604 (2009) - Published 17 September, 2009

Freezing in the bulk controlled by prefreezing at a surface

A. J. Page and R. P. Sear

Phys. Rev. E 80, 031605 (2009) - Published 18 September, 2009

Observation of local thickness fluctuations in surfactant membranes using neutron spin echo

Michihiro Nagao

Phys. Rev. E 80, 031606 (2009) - Published 22 September, 2009

Understanding adsorption and desorption processes in mesoporous materials with independent disordered channels

Sergej Naumov, Rustem Valiullin, Jörg Kärger, and Peter A. Monson

Phys. Rev. E 80, 031607 (2009) - Published 22 September, 2009

Shear rate threshold for the boundary slip in dense polymer films

Nikolai V. Priezjev

Phys. Rev. E 80, 031608 (2009) - Published 24 September, 2009

Liquid crystals

Spontaneously chiral domains of an achiral bent-core nematic liquid crystal in a planar aligned device

P. S. Salter, P. W. Benzie, R. A. Reddy, C. Tschierske, S. J. Elston, and E. P. Raynes

Phys. Rev. E 80, 031701 (2009) - Published 3 September, 2009

Mesogenic lattice models with partly antinematic interactions producing uniaxial nematic phases

Giovanni De Matteis and Silvano Romano

Phys. Rev. E 80, 031702 (2009) - Published 8 September, 2009

Liquid-crystal transitions: A first-principles multiscale approach

Z. Shreif, S. Pankavich, and P. Ortoleva

Phys. Rev. E 80, 031703 (2009) - Published 10 September, 2009

Dispersions of pyrogenic alumina in pentylcyanobiphenyl studied by deuteron NMR

C. T. Yim

Phys. Rev. E 80, 031704 (2009) - Published 10 September, 2009

Variational theory for nematoacoustics

Epifanio G. Virga

Phys. Rev. E 80, 031705 (2009) - Published 14 September, 2009

Simulation of cholesteric blue phases using a Landau–de Gennes theory: Effect of an applied electric field

Jun-ichi Fukuda (福田順一), Makoto Yoneya (米谷慎), and Hiroshi Yokoyama (横山浩)

Phys. Rev. E 80, 031706 (2009) - Published 15 September, 2009

Comparison between experiment and theory in the temperature variation of film tension above the bulk isotropic transition in free-standing liquid-crystal films

M. Veum, L. Duelge, J. Droske, H. T. Nguyen, C. C. Huang, and L. V. Mirantsev

Phys. Rev. E 80, 031707 (2009) - Published 16 September, 2009

Liquid-crystal pumping in a cylindrical capillary with radial temperature gradient

A. V. Zakharov and A. A. Vakulenko

Phys. Rev. E 80, 031708 (2009) - Published 18 September, 2009

Flexoelectro-optic properties of chiral nematic liquid crystals in the uniform standing helix configuration

F. Castles, S. M. Morris, and H. J. Coles

Phys. Rev. E 80, 031709 (2009) - Published 18 September, 2009

Mechanically induced Helfrich-Hurault effect in lamellar systems

Gaetano Napoli and Andrea Nobili

Phys. Rev. E 80, 031710 (2009) - Published 21 September, 2009

Director reorientation in a hybrid-oriented liquid-crystal film induced by thermomechanical effect

A. V. Zakharov and A. A. Vakulenko

Phys. Rev. E 80, 031711 (2009) - Published 24 September, 2009

Extension of the Hamaneh-Taylor model using the macroscopic polarization for the description of chiral smectic liquid crystals

H. Dhaouadi, N. Bitri, S. Essid, T. Soltani, A. Gharbi, and J. P. Marcerou

Phys. Rev. E 80, 031712 (2009) - Published 28 September, 2009

Polymers

Gel-like elasticity in glass-forming side-chain liquid-crystal polymers

O. Pozo, D. Collin, H. Finkelmann, D. Rogez, and P. Martinoty

Phys. Rev. E 80, 031801 (2009) - Published 22 September, 2009

Glass transition and molecular mobility in polymer thin films

R. Inoue, T. Kanaya, K. Nishida, I. Tsukushi, M. T. F. Telling, B. J. Gabrys, M. Tyagi, C. Soles, and W.-l. Wu

Phys. Rev. E 80, 031802 (2009) - Published 22 September, 2009

Topological analysis of polymeric melts: Chain-length effects and fast-converging estimators for entanglement length

Robert S. Hoy, Katerina Foteinopoulou, and Martin Kröger

Phys. Rev. E 80, 031803 (2009) - Published 29 September, 2009

Biological physics

Budding and vesiculation induced by conical membrane inclusions

Thorsten Auth and Gerhard Gompper

Phys. Rev. E 80, 031901 (2009) - Published 3 September, 2009

Isotropic-nematic phase transition in amyloid fibrilization

Chiu Fan Lee (李超帆)

Phys. Rev. E 80, 031902 (2009) - Published 9 September, 2009

FEATURED IN PHYSICS

Enhanced mixing and spatial instability in concentrated bacterial suspensions

Andrey Sokolov, Raymond E. Goldstein, Felix I. Feldchtein, and Igor S. Aranson

Phys. Rev. E 80, 031903 (2009) - Published 10 September, 2009

Continuous model for microtubule dynamics with catastrophe, rescue, and nucleation processes

Peter Hinow, Vahid Rezania, and Jack A. Tuszyński

Phys. Rev. E 80, 031904 (2009) - Published 11 September, 2009

Structural variability and the incoherent addition of scattered intensities in single-particle diffraction

Filipe R. N. C. Maia, Tomas Ekeberg, Nicuşor Tîmneanu, David van der Spoel, and Janos Hajdu

Phys. Rev. E 80, 031905 (2009) - Published 18 September, 2009

Interaction of electrically evoked responses in networks of dissociated cortical neurons

Pieter Laurens Baljon, Michela Chiappalone, and Sergio Martinoia

Phys. Rev. E 80, 031906 (2009) - Published 18 September, 2009

Inhibition and modulation of rhythmic neuronal spiking by noise

Henry C. Tuckwell, Jürgen Jost, and Boris S. Gutkin

Phys. Rev. E 80, 031907 (2009) - Published 18 September, 2009

Fluctuation dynamics of spherical vesicles: Frustration of regular bulk dissipation into subdiffusive relaxation

Laura R. Arriaga, Iván López-Montero, Guillermo Orts-Gil, Bela Farago, Thomas Hellweg, and Francisco Monroy

Phys. Rev. E 80, 031908 (2009) - Published 21 September, 2009

Comparative study of different integrate-and-fire neurons: Spontaneous activity, dynamical response, and stimulus-induced correlation

Rafael D. Vilela and Benjamin Lindner

Phys. Rev. E 80, 031909 (2009) - Published 21 September, 2009

Scale coloration change following water absorption in the beetle Hoplia coerulea (Coleoptera)

Marie Rassart, Priscilla Simonis, Annick Bay, Olivier Deparis, and Jean Pol Vigneron

Phys. Rev. E 80, 031910 (2009) - Published 21 September, 2009

Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on a POPG membrane

Igor S. Tolokh, Victor Vivcharuk, Bruno Tomberli, and C. G. Gray

Phys. Rev. E 80, 031911 (2009) - Published 22 September, 2009

From a discrete to a continuum model of cell dynamics in one dimension

Philip J. Murray, Carina M. Edwards, Marcus J. Tindall, and Philip K. Maini

Phys. Rev. E 80, 031912 (2009) - Published 23 September, 2009

Temperature and pressure spikes in ion-beam cancer therapy

Marcel Toulemonde, Eugene Surdutovich, and Andrey V. Solov’yov

Phys. Rev. E 80, 031913 (2009) - Published 23 September, 2009

Maximally informative pairwise interactions in networks

Jeffrey D. Fitzgerald and Tatyana O. Sharpee

Phys. Rev. E 80, 031914 (2009) - Published 23 September, 2009

DNA stretching and multivalent-cation-induced condensation

Yevgeni Sh. Mamasakhlisov, Brian A. Todd, Artem. V. Badasyan, Anna. V. Mkrtchyan, Vladimir. F. Morozov, and V. Adrian Parsegian

Phys. Rev. E 80, 031915 (2009) - Published 24 September, 2009

Probing noise in gene expression and protein production

Sandro Azaele, Jayanth R. Banavar, and Amos Maritan

Phys. Rev. E 80, 031916 (2009) - Published 24 September, 2009

Unraveling DNA tori under tension

C. Battle, B. van den Broek, M. C. Noom, J. van Mameren, G. J. L. Wuite, and F. C. MacKintosh

Phys. Rev. E 80, 031917 (2009) - Published 25 September, 2009

Network-induced chaos in integrate-and-fire neuronal ensembles

Douglas Zhou, Aaditya V. Rangan, Yi Sun, and David Cai

Phys. Rev. E 80, 031918 (2009) - Published 28 September, 2009

Symmetry breaking mechanism for epithelial cell polarization

A. Veglio, A. Gamba, M. Nicodemi, F. Bussolino, and G. Serini

Phys. Rev. E 80, 031919 (2009) - Published 29 September, 2009

Optimizing information flow in small genetic networks

Gašper Tkačik, Aleksandra M. Walczak, and William Bialek

Phys. Rev. E 80, 031920 (2009) - Published 29 September, 2009

Dynamical structures in binary media of potassium-driven neurons

D. E. Postnov, F. Müller, R. B. Schuppner, and L. Schimansky-Geier

Phys. Rev. E 80, 031921 (2009) - Published 30 September, 2009

Self-assembly of protein amyloids: A competition between amorphous and ordered aggregation

Chiu Fan Lee (李超帆)

Phys. Rev. E 80, 031922 (2009) - Published 30 September, 2009

BRIEF REPORTS

Liquid crystals

Optical waveguiding in bent-core liquid-crystal filaments

J. Fontana, C. Bailey, W. Weissflog, I. Jánossy, and A. Jákli

Phys. Rev. E 80, 032701 (2009) - Published 29 September, 2009

Biological physics

Optimality properties of a proposed precursor to the genetic code

Thomas Butler and Nigel Goldenfeld

Phys. Rev. E 80, 032901 (2009) - Published 30 September, 2009

RAPID COMMUNICATIONS

Interdisciplinary physics

RAPID COMMUNICATION

Curvature and temperature of complex networks

Dmitri Krioukov, Fragkiskos Papadopoulos, Amin Vahdat, and Marián Boguñá

Phys. Rev. E 80, 035101(R) (2009) - Published 23 September, 2009

Chaos and pattern formation

RAPID COMMUNICATION

Quasimodes of a chaotic elastic cavity with increasing local losses

O. Xeridat, C. Poli, O. Legrand, F. Mortessagne, and P. Sebbah

Phys. Rev. E 80, 035201(R) (2009) - Published 4 September, 2009

RAPID COMMUNICATION

Quantum chaotic resonances from short periodic orbits

M. Novaes, J. M. Pedrosa, D. Wisniacki, G. G. Carlo, and J. P. Keating

Phys. Rev. E 80, 035202(R) (2009) - Published 15 September, 2009

RAPID COMMUNICATION

Noise-reversed stability of Turing patterns versus Hopf oscillations near codimension-two conditions

Sergio Alonso and Francesc Sagués

Phys. Rev. E 80, 035203(R) (2009) - Published 21 September, 2009

RAPID COMMUNICATION

Avoided-level-crossing statistics in open chaotic billiards

Charles Poli, Barbara Dietz, Olivier Legrand, Fabrice Mortessagne, and Achim Richter

Phys. Rev. E 80, 035204(R) (2009) - Published 25 September, 2009

RAPID COMMUNICATION

Method to modify random matrix theory using short-time behavior in chaotic systems

A. Matthew Smith and Lev Kaplan

Phys. Rev. E 80, 035205(R) (2009) - Published 29 September, 2009

RAPID COMMUNICATION

Pseudoclassical theory for fidelity of nearly resonant quantum rotors

Martina Abb, Italo Guarneri, and Sandro Wimberger

Phys. Rev. E 80, 035206(R) (2009) - Published 29 September, 2009

Fluid dynamics

RAPID COMMUNICATION

Dynamics of light particles in oscillating cellular flows

Roberto Festa, Andrea Mazzino, and Manuela Todini

Phys. Rev. E 80, 035301(R) (2009) - Published 16 September, 2009

RAPID COMMUNICATION

From reversing to hemispherical dynamos

Basile Gallet and François Pétrélis

Phys. Rev. E 80, 035302(R) (2009) - Published 28 September, 2009

Plasma physics

RAPID COMMUNICATION

Self-field and wake of a charged particle in a plasma

Hai Lin, Baifei Shen, Xuejun Zha, Ruxin Li, Li-Ming Chen, and Zhizhan Xu

Phys. Rev. E 80, 035401(R) (2009) - Published 10 September, 2009

ARTICLES

Interdisciplinary physics

Diagrammatic expansion of pulse-coupled network dynamics in terms of subnetworks

Aaditya V. Rangan

Phys. Rev. E 80, 036101 (2009) - Published 1 September, 2009

Experimental study of short-range interactions in vehicular traffic

Cécile Appert-Rolland

Phys. Rev. E 80, 036102 (2009) - Published 2 September, 2009

Nonequilibrium phase transition due to isolation of communities

Julian Sienkiewicz and Janusz A. Hołyst

Phys. Rev. E 80, 036103 (2009) - Published 2 September, 2009

Backbone of complex networks of corporations: The flow of control

J. B. Glattfelder and S. Battiston

Phys. Rev. E 80, 036104 (2009) - Published 8 September, 2009

Structure of shells in complex networks

Jia Shao, Sergey V. Buldyrev, Lidia A. Braunstein, Shlomo Havlin, and H. Eugene Stanley

Phys. Rev. E 80, 036105 (2009) - Published 9 September, 2009

Diversity of reproduction time scale promotes cooperation in spatial prisoner’s dilemma games

Zhi-Xi Wu, Zhihai Rong, and Petter Holme

Phys. Rev. E 80, 036106 (2009) - Published 9 September, 2009

Bond percolation on a class of clustered random networks

James P. Gleeson

Phys. Rev. E 80, 036107 (2009) - Published 10 September, 2009

Superstatistical fluctuations in time series: Applications to share-price dynamics and turbulence

Erik Van der Straeten and Christian Beck

Phys. Rev. E 80, 036108 (2009) - Published 14 September, 2009

Abnormal cascading on complex networks

Wen-Xu Wang and Ying-Cheng Lai

Phys. Rev. E 80, 036109 (2009) - Published 14 September, 2009

Introduction of frictional and turning function for pedestrian outflow with an obstacle

Daichi Yanagisawa, Ayako Kimura, Akiyasu Tomoeda, Ryosuke Nishi, Yushi Suma, Kazumichi Ohtsuka, and Katsuhiro Nishinari

Phys. Rev. E 80, 036110 (2009) - Published 15 September, 2009

Spectral tripartitioning of networks

Thomas Richardson, Peter J. Mucha, and Mason A. Porter

Phys. Rev. E 80, 036111 (2009) - Published 16 September, 2009

Graph-based analysis of kinetics on multidimensional potential-energy surfaces

T. Okushima, T. Niiyama, K. S. Ikeda, and Y. Shimizu

Phys. Rev. E 80, 036112 (2009) - Published 17 September, 2009

Analytical calculation of the frequency shift in phase oscillators driven by colored noise: Implications for electrical engineering and neuroscience

Roberto F. Galán

Phys. Rev. E 80, 036113 (2009) - Published 17 September, 2009

Long-time correlations in company profit fluctuations: Presence of extreme events

H. Eduardo Roman, Riccardo A. Siliprandi, Christian Dose, and Markus Porto

Phys. Rev. E 80, 036114 (2009) - Published 18 September, 2009

Community detection in networks with positive and negative links

V. A. Traag and Jeroen Bruggeman

Phys. Rev. E 80, 036115 (2009) - Published 21 September, 2009

Drying and cracking mechanisms in a starch slurry

Lucas Goehring

Phys. Rev. E 80, 036116 (2009) - Published 21 September, 2009

Stripe domain coarsening in geographical small-world networks on a Euclidean lattice

R. Imayama and Y. Shiwa

Phys. Rev. E 80, 036117 (2009) - Published 22 September, 2009

Hypergraph topological quantities for tagged social networks

Vinko Zlatić, Gourab Ghoshal, and Guido Caldarelli

Phys. Rev. E 80, 036118 (2009) - Published 25 September, 2009

Exact encounter times for many random walkers on regular and complex networks

David P. Sanders

Phys. Rev. E 80, 036119 (2009) - Published 29 September, 2009

Multiscaling in an $Y X$ model of networks

Petter Holme, Zhi-Xi Wu, and Petter Minnhagen

Phys. Rev. E 80, 036120 (2009) - Published 29 September, 2009

Chaos and pattern formation

Delocalization and spreading in a nonlinear Stark ladder

Dmitry O. Krimer, Ramaz Khomeriki, and Sergej Flach

Phys. Rev. E 80, 036201 (2009) - Published 4 September, 2009

Swift-Hohenberg equation with broken reflection symmetry

J. Burke, S. M. Houghton, and E. Knobloch

Phys. Rev. E 80, 036202 (2009) - Published 11 September, 2009

Real-time estimation of interaction delays

Dongchuan Yu and Stefano Boccaletti

Phys. Rev. E 80, 036203 (2009) - Published 14 September, 2009

Generic behavior of master-stability functions in coupled nonlinear dynamical systems

Liang Huang, Qingfei Chen, Ying-Cheng Lai, and Louis M. Pecora

Phys. Rev. E 80, 036204 (2009) - Published 15 September, 2009

Self-similar nested sequences on a chaotic attractor for traveling-wave electrophoresis

Boyd F. Edwards

Phys. Rev. E 80, 036205 (2009) - Published 16 September, 2009

Renormalization group approach to oscillator synchronization

Oleg Kogan, Jeffrey L. Rogers, M. C. Cross, and G. Refael

Phys. Rev. E 80, 036206 (2009) - Published 18 September, 2009

Collective-phase description of coupled oscillators with general network structure

Hiroshi Kori, Yoji Kawamura, Hiroya Nakao, Kensuke Arai, and Yoshiki Kuramoto

Phys. Rev. E 80, 036207 (2009) - Published 21 September, 2009

Lagrangian topology of a periodically reoriented potential flow: Symmetry, optimization, and mixing

D. R. Lester, G. Metcalfe, M. G. Trefry, A. Ord, B. Hobbs, and M. Rudman

Phys. Rev. E 80, 036208 (2009) - Published 21 September, 2009

Stability of splay states in globally coupled rotators

Massimo Calamai, Antonio Politi, and Alessandro Torcini

Phys. Rev. E 80, 036209 (2009) - Published 21 September, 2009

Instability statistics and mixing rates

Roberto Artuso and Cesar Manchein

Phys. Rev. E 80, 036210 (2009) - Published 21 September, 2009

Nonlinear waves with negative phase velocity

Xiaoqing Huang, Xuhong Liao, Xiaohua Cui, Hong Zhang, and Gang Hu

Phys. Rev. E 80, 036211 (2009) - Published 22 September, 2009

Nonperiodic echoes from quantum mushroom-billiard hats

B. Dietz, T. Friedrich, M. Miski-Oglu, A. Richter, F. Schäfer, and T. H. Seligmann

Phys. Rev. E 80, 036212 (2009) - Published 24 September, 2009

Plasma physics

Steady-shear-enhanced microdiffusion with multiple time scales of confined, mesoscopic, two-dimensional dusty-plasma liquids

Chong-Wai Io and Lin I

Phys. Rev. E 80, 036401 (2009) - Published 4 September, 2009

Why the local-mean-energy approximation should be used in hydrodynamic plasma descriptions instead of the local-field approximation

G. K. Grubert, M. M. Becker, and D. Loffhagen

Phys. Rev. E 80, 036405 (2009) - Published 22 September, 2009

Exact solutions to three-dimensional generalized nonlinear Schrödinger equations with varying potential and nonlinearities

Zhenya Yan and V. V. Konotop

Phys. Rev. E 80, 036607 (2009) - Published 28 September, 2009

Self-induced gap solitons in nonlinear magnetic metamaterials

Weina Cui, Yongyuan Zhu, Hongxia Li, and Sumei Liu

Phys. Rev. E 80, 036608 (2009) - Published 30 September, 2009

Computational physics

Simulation of the time evolution of the Wigner function with a first-principles Monte Carlo method

M. S. Torres, Jr., G. Tosi, and J. M. A. Figueiredo

Phys. Rev. E 80, 036701 (2009) - Published 4 September, 2009

Incorporating forcing terms in cascaded lattice Boltzmann approach by method of central moments

Kannan N. Premnath and Sanjoy Banerjee

Phys. Rev. E 80, 036702 (2009) - Published 11 September, 2009

Analysis of the lattice Boltzmann Bhatnagar-Gross-Krook no-slip boundary condition: Ways to improve accuracy and stability

Joris C. G. Verschaeve

Phys. Rev. E 80, 036703 (2009) - Published 11 September, 2009

Comparison of the static and dynamic properties of a semiflexible polymer using lattice Boltzmann and Brownian-dynamics simulations

Anthony J. C. Ladd, Rahul Kekre, and Jason E. Butler

Phys. Rev. E 80, 036704 (2009) - Published 22 September, 2009

Dissipative forces for Lagrangian models in computational fluid dynamics and application to smoothed-particle hydrodynamics

D. Violeau

Phys. Rev. E 80, 036705 (2009) - Published 25 September, 2009

Algorithms for Brownian first-passage-time estimation

Artur B. Adib

Phys. Rev. E 80, 036706 (2009) - Published 29 September, 2009

Single-cluster dynamics for the random-cluster model

Youjin Deng, Xiaofeng Qian, and Henk W. J. Blöte

Phys. Rev. E 80, 036707 (2009) - Published 30 September, 2009

BRIEF REPORTS

Interdisciplinary physics

Modeling scientific-citation patterns and other triangle-rich acyclic networks

Zhi-Xi Wu and Petter Holme

Phys. Rev. E 80, 037101 (2009) - Published 14 September, 2009

From complex structures to complex processes: Percolation theory applied to the formation of a city

Agnieszka Bitner, Robert Hołyst, and Marcin Fiałkowski

Phys. Rev. E 80, 037102 (2009) - Published 25 September, 2009

Chaos and pattern formation

Spreading for the generalized nonlinear Schrödinger equation with disorder

Hagar Veksler, Yevgeny Krivolapov, and Shmuel Fishman

Phys. Rev. E 80, 037201 (2009) - Published 8 September, 2009

Moving breathing pulses in the one-dimensional complex cubic-quintic Ginzburg-Landau equation

Pablo Gutiérrez, Daniel Escaff, Santiago Pérez-Oyarzún, and Orazio Descalzi

Phys. Rev. E 80, 037202 (2009) - Published 30 September, 2009

Fluid dynamics

Prime modes of fluid circulation in large-aspect-ratio turbulent Rayleigh-Bénard convection

Jos Verdoold, Mark J. Tummers, and Kemo Hanjalić

Phys. Rev. E 80, 037301 (2009) - Published 29 September, 2009

Plasma physics

Effects of nonthermal distribution of electrons and polarity of net dust-charge number density on nonplanar dust-ion-acoustic solitary waves

A. A. Mamun and P. K. Shukla

Phys. Rev. E 80, 037401 (2009) - Published 25 September, 2009

Classical physics

Dynamics of wave packets for the nonlinear Schrödinger equation with a random potential

Alexander Iomin

Phys. Rev. E 80, 037601 (2009) - Published 3 September, 2009

Short waves in ferromagnetic media

H. Leblond and M. Manna

Phys. Rev. E 80, 037602 (2009) - Published 18 September, 2009

Computational physics

Explicit symplectic integrators for solving nonseparable Hamiltonians

Siu A. Chin

Phys. Rev. E 80, 037701 (2009) - Published 21 September, 2009

Lattice Boltzmann model for axisymmetric thermal flows

Q. Li, Y. L. He, G. H. Tang, and W. Q. Tao

Phys. Rev. E 80, 037702 (2009) - Published 28 September, 2009

ERRATA

Publisher's Note: Master equation approach to line shape in dissipative systems [Phys. Rev. E 80, 021128 (2009)]

Chikako Uchiyama, Masaki Aihara, Mizuhiko Saeki, and Seiji Miyashita

Phys. Rev. E 80, 039901 (2009) - Published 2 September, 2009

Erratum: Universal scaling functions of critical Casimir forces obtained by Monte Carlo simulations [Phys. Rev. E 79, 041142 (2009)]

O. Vasilyev, A. Gambassi, A. Maciołek, and S. Dietrich

Phys. Rev. E 80, 039902 (2009) - Published 28 September, 2009