Volume 104, Issue 2

August 2021

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

High-dimensional percolation criticality and hints of mean-field-like caging of the random Lorentz gas

Benoit Charbonneau, Patrick Charbonneau, Yi Hu, and Zhen Yang

Phys. Rev. E 104, 024137 (2021) - Published 27 August, 2021

This work examines theoretical and computational methods for studying the random Lorentz gas, which is considered as a minimal model for transport in disordered media. The authors find an additional intermediate-time dynamical slowdown in some methods. They suggest a modified model that clarifies previous inconsistencies found in the interplay between percolation and glass physics.

EDITORS' SUGGESTION

Extrusion of chromatin loops by a composite loop extrusion factor

Hao Yan, Ivan Surovtsev, Jessica F. Williams, Mary Lou P. Bailey, Megan C. King, and Simon G. J. Mochrie

Phys. Rev. E 104, 024414 (2021) - Published 23 August, 2021

Chromatin, a structure consisting of DNA and other proteins, can fold and form loops. Experiments show loop formation may be hindered by nucleosomes that surround chromatin in cells. This paper describes a scenario under which loop formation can happen and proposes a mechanism of relocation or removal of nucleosomes that enables this.

EDITORS' SUGGESTION

Active elasticity drives the formation of periodic beading in damaged axons

Davide Riccobelli

Phys. Rev. E 104, 024417 (2021) - Published 30 August, 2021

Certain diseases can cause axons, the nerve fiber portions of neurons, to form a periodic series of bulges. Evidence suggests that these bulges are caused by the disruption of the axon’s cytoskeleton, and the author describes their formation with a model based on continuum mechanics and nonlinear elasticity.

LETTERS

Statistical Physics

LETTER

Steps minimize dissipation in rapidly driven stochastic systems

Steven Blaber, Miranda D. Louwerse, and David A. Sivak

Phys. Rev. E 104, L022101 (2021) - Published 5 August, 2021

LETTER

Improved bound on entropy production in a quantum annealer

Michele Campisi and Lorenzo Buffoni

Phys. Rev. E 104, L022102 (2021) - Published 9 August, 2021

LETTER

Clausius inequality for finite baths reveals universal efficiency improvements

Philipp Strasberg, María García Díaz, and Andreu Riera-Campeny

Phys. Rev. E 104, L022103 (2021) - Published 19 August, 2021

Nonlinear Dynamics and Chaos

LETTER

Algebraic approach to the Kuramoto model

Lyle Muller, Ján Mináč, and Tung T. Nguyen

Phys. Rev. E 104, L022201 (2021) - Published 5 August, 2021

LETTER

Asymmetry-induced isolated fully synchronized state in coupled oscillator populations

Oleh E. Omel'chenko, Jorge Luis Ocampo-Espindola, and István Z. Kiss

Phys. Rev. E 104, L022202 (2021) - Published 11 August, 2021

LETTER

Moving spiral wave chimeras

Martin Bataille-Gonzalez, Marcel G. Clerc, and Oleh E. Omel'chenko

Phys. Rev. E 104, L022203 (2021) - Published 20 August, 2021

Biological Physics

LETTER

Mechanics of cup-shaped caveolae

Ahis Shrestha, Fabien Pinaud, and Christoph A. Haselwandter

Phys. Rev. E 104, L022401 (2021) - Published 6 August, 2021

LETTER

Shear-induced phase transition and critical exponents in three-dimensional fiber networks

Sadjad Arzash, Jordan L. Shivers, and Fred C. MacKintosh

Phys. Rev. E 104, L022402 (2021) - Published 17 August, 2021

Colloids, Complex Fluids, and Active Matter

LETTER

Violation of triboelectric charge conservation on colliding particles

Felix Jungmann, Hannah van Unen, Jens Teiser, and Gerhard Wurm

Phys. Rev. E 104, L022601 (2021) - Published 20 August, 2021

Liquid Crystals

LETTER

Cooling a spherical nematic shell

Gaetano Napoli and Luigi Vergori

Phys. Rev. E 104, L022701 (2021) - Published 2 August, 2021

Films and Interfaces

LETTER

Kink propagation and solute partitioning in an atomic monolayer on a substrate

Metehan Çam, Seth Lichter, and Christopher G. Goedde

Phys. Rev. E 104, L022801 (2021) - Published 17 August, 2021

Plasma Physics

LETTER

Mitigation of magneto-Rayleigh-Taylor instability growth in a triple-nozzle, neutron-producing gas-puff $Z$ pinch

J. Narkis, F. Conti, A. L. Velikovich, and F. N. Beg

Phys. Rev. E 104, L023201 (2021) - Published 12 August, 2021

LETTER

Fundamental interactions in a classical Wigner system

Matthew Lippy, Hayden Bland, and Alexander Bataller

Phys. Rev. E 104, L023202 (2021) - Published 26 August, 2021

ARTICLES

Statistical Physics

Densest ternary sphere packings

Ryotaro Koshoji and Taisuke Ozaki

Phys. Rev. E 104, 024101 (2021) - Published 2 August, 2021

Continuous nonequilibrium transition driven by heat flow

Yirui Zhang, Marek Litniewski, Karol Makuch, Paweł J. Żuk, Anna Maciołek, and Robert Hołyst

Phys. Rev. E 104, 024102 (2021) - Published 2 August, 2021

Roughness in the periodic potential enhances transport in a driven inertial ratchet

Archana G. R. and Debashis Barik

Phys. Rev. E 104, 024103 (2021) - Published 2 August, 2021

Fixed-dimension renormalization group analysis of conserved surface roughening

Viktor Škultéty and Juha Honkonen

Phys. Rev. E 104, 024104 (2021) - Published 4 August, 2021

Time averaging and emerging nonergodicity upon resetting of fractional Brownian motion and heterogeneous diffusion processes

Wei Wang, Andrey G. Cherstvy, Holger Kantz, Ralf Metzler, and Igor M. Sokolov

Phys. Rev. E 104, 024105 (2021) - Published 5 August, 2021

Extinctions of coupled populations, and rare event dynamics under non-Gaussian noise

Tal Agranov and Guy Bunin

Phys. Rev. E 104, 024106 (2021) - Published 5 August, 2021

Robust parameter estimation based on the generalized log-likelihood in the context of Sharma-Taneja-Mittal measure

Sérgio Luiz E. F. da Silva and G. Kaniadakis

Phys. Rev. E 104, 024107 (2021) - Published 6 August, 2021

Monte Carlo study of the two-dimensional kinetic Blume-Capel model in a quenched random crystal field

Alexandros Vasilopoulos, Zeynep Demir Vatansever, Erol Vatansever, and Nikolaos G. Fytas

Phys. Rev. E 104, 024108 (2021) - Published 9 August, 2021

Universal properties of the Kardar-Parisi-Zhang equation with quenched columnar disorders

Astik Haldar

Phys. Rev. E 104, 024109 (2021) - Published 9 August, 2021

Stochastic model for football's collective dynamics

A. Chacoma, N. Almeira, J. I. Perotti, and O. V. Billoni

Phys. Rev. E 104, 024110 (2021) - Published 9 August, 2021

Nonhydrodynamic initial conditions are not soon forgotten

T. R. Kirkpatrick, D. Belitz, and J. R. Dorfman

Phys. Rev. E 104, 024111 (2021) - Published 10 August, 2021

Asymmetric excitation of left- and right-tail extreme events probed using a Hawkes model: Application to financial returns

Matthew F. Tomlinson, David Greenwood, and Marcin Mucha-Kruczyński

Phys. Rev. E 104, 024112 (2021) - Published 10 August, 2021

Integral decomposition for the solutions of the generalized Cattaneo equation

K. Górska

Phys. Rev. E 104, 024113 (2021) - Published 11 August, 2021

Zeroth-order phase transition in the Blume-Emery-Griffiths model without bilinear exchange coupling

Ji-Xuan Hou

Phys. Rev. E 104, 024114 (2021) - Published 11 August, 2021

Inertia triggers nonergodicity of fractional Brownian motion

Andrey G. Cherstvy, Wei Wang, Ralf Metzler, and Igor M. Sokolov

Phys. Rev. E 104, 024115 (2021) - Published 13 August, 2021

Response and flux of information in extended nonequilibrium dynamics

Camilla Sarra, Marco Baldovin, and Angelo Vulpiani

Phys. Rev. E 104, 024116 (2021) - Published 16 August, 2021

Generating discrete-time constrained random walks and Lévy flights

Benjamin De Bruyne, Satya N. Majumdar, and Grégory Schehr

Phys. Rev. E 104, 024117 (2021) - Published 16 August, 2021

Tensor network simulation for the frustrated $J_{1} − J_{2}$ Ising model on the square lattice

Hong Li and Li-Ping Yang

Phys. Rev. E 104, 024118 (2021) - Published 16 August, 2021

Inference of stochastic time series with missing data

Sangwon Lee, Vipul Periwal, and Junghyo Jo

Phys. Rev. E 104, 024119 (2021) - Published 16 August, 2021

Potential-driven random walks on interconnected systems

Barbara Benigni, Riccardo Gallotti, and Manlio De Domenico

Phys. Rev. E 104, 024120 (2021) - Published 16 August, 2021

Mori-Zwanzig projection operator formalism: Particle-based coarse-grained dynamics of open classical systems far from equilibrium

Sergei Izvekov

Phys. Rev. E 104, 024121 (2021) - Published 16 August, 2021

Critical behavior of magnetic polymers in two and three dimensions

Damien Paul Foster and Debjyoti Majumdar

Phys. Rev. E 104, 024122 (2021) - Published 16 August, 2021

Attraction and condensation of driven tracers in a narrow channel

Asaf Miron, David Mukamel, and Harald A. Posch

Phys. Rev. E 104, 024123 (2021) - Published 17 August, 2021

Density functional for the lattice gas from fundamental measure theory

M. Maeritz and M. Oettel

Phys. Rev. E 104, 024124 (2021) - Published 18 August, 2021

Noise-to-noise ratios in correlation length calculations near criticality

Avishay Efrat

Phys. Rev. E 104, 024125 (2021) - Published 19 August, 2021

Dipolar Ising model: Phases, growth laws, and universality

Shikha Kumari, Sanjay Puri, and Varsha Banerjee

Phys. Rev. E 104, 024126 (2021) - Published 19 August, 2021

Complexity and information geometry in the transverse $X Y$ model

Nitesh Jaiswal, Mamta Gautam, and Tapobrata Sarkar

Phys. Rev. E 104, 024127 (2021) - Published 20 August, 2021

Structural properties of additive binary hard-sphere mixtures. II. Asymptotic behavior and structural crossovers

Sławomir Pieprzyk, Santos B. Yuste, Andrés Santos, Mariano López de Haro, and Arkadiusz C. Brańka

Phys. Rev. E 104, 024128 (2021) - Published 23 August, 2021

High-capacity and high-power collective charging with spin chargers

Yong Huangfu and Jun Jing

Phys. Rev. E 104, 024129 (2021) - Published 23 August, 2021

Polar swimmers induce several phases in active nematics

Pranay Bimal Sampat and Shradha Mishra

Phys. Rev. E 104, 024130 (2021) - Published 24 August, 2021

Large heat-capacity jump in cooling-heating of fragile glass from kinetic Monte Carlo simulations based on a two-state picture

Chun-Shing Lee, Hai-Yao Deng, Cho-Tung Yip, and Chi-Hang Lam

Phys. Rev. E 104, 024131 (2021) - Published 25 August, 2021

Arcsine law and multistable Brownian dynamics in a tilted periodic potential

J. Spiechowicz and J. Łuczka

Phys. Rev. E 104, 024132 (2021) - Published 26 August, 2021

Stochastic resonance of abundance fluctuations and mean time to extinction in an ecological community

Jong Il Park, Beom Jun Kim, and Hye Jin Park

Phys. Rev. E 104, 024133 (2021) - Published 26 August, 2021

Phase diagrams of the antiferromagnetic $X Y$ model on a triangular lattice with higher-order interactions

M. Lach and M. Žukovič

Phys. Rev. E 104, 024134 (2021) - Published 26 August, 2021

Eigenstate thermalization on average

Joe Dunlop, Oliver Cohen, and Anthony J. Short

Phys. Rev. E 104, 024135 (2021) - Published 26 August, 2021

Diagnosing first- and second-order phase transitions with probes of quantum chaos

Kyoung-Bum Huh, Kazuki Ikeda, Viktor Jahnke, and Keun-Young Kim

Phys. Rev. E 104, 024136 (2021) - Published 27 August, 2021

EDITORS' SUGGESTION

High-dimensional percolation criticality and hints of mean-field-like caging of the random Lorentz gas

Benoit Charbonneau, Patrick Charbonneau, Yi Hu, and Zhen Yang

Phys. Rev. E 104, 024137 (2021) - Published 27 August, 2021

Magnetization profiles at the upper critical dimension as solutions of the integer Yamabe problem

Alessandro Galvani, Giacomo Gori, and Andrea Trombettoni

Phys. Rev. E 104, 024138 (2021) - Published 30 August, 2021

Superstatistics and quantum entanglement in the isotropic spin-1/2 $X X$ dimer from a nonadditive thermodynamics perspective

Jorge David Castaño-Yepes and Cristian Felipe Ramirez-Gutierrez

Phys. Rev. E 104, 024139 (2021) - Published 30 August, 2021

Excess and loss of entropy production for different levels of coarse graining

Pierpaolo Bilotto, Lorenzo Caprini, and Angelo Vulpiani

Phys. Rev. E 104, 024140 (2021) - Published 30 August, 2021

Nonlinear Dynamics and Chaos

Collective coordinate framework to study solitary waves in stochastically perturbed Korteweg–de Vries equations

Madeleine Cartwright and Georg A. Gottwald

Phys. Rev. E 104, 024201 (2021) - Published 2 August, 2021

Metacommunity persistence to environmental change: Stabilizing and destabilizing effects of individual species dispersal

Ramesh Arumugam, V. K. Chandrasekar, and D. V. Senthilkumar

Phys. Rev. E 104, 024202 (2021) - Published 3 August, 2021

Kuramoto model with run-and-tumble dynamics

Derek Frydel

Phys. Rev. E 104, 024203 (2021) - Published 4 August, 2021

Bistability in the synchronization of identical neurons

B. R. R. Boaretto, R. C. Budzinski, K. L. Rossi, C. Manchein, T. L. Prado, U. Feudel, and S. R. Lopes

Phys. Rev. E 104, 024204 (2021) - Published 5 August, 2021

Learning Hamiltonian dynamics with reservoir computing

Han Zhang, Huawei Fan, Liang Wang, and Xingang Wang

Phys. Rev. E 104, 024205 (2021) - Published 6 August, 2021

Chaos in the quantum Duffing oscillator in the semiclassical regime under parametrized dissipation

Andrew D. Maris, Bibek Pokharel, Sharan Ganjam Seshachallam, Moses Z. R. Misplon, and Arjendu K. Pattanayak

Phys. Rev. E 104, 024206 (2021) - Published 6 August, 2021

Symbiotic solitons in quasi-one- and quasi-two-dimensional spin-1 condensates

S. K. Adhikari

Phys. Rev. E 104, 024207 (2021) - Published 11 August, 2021

Time reversal symmetry and the difference between relaxations and building-up periods

Philipp G. Meyer and Holger Kantz

Phys. Rev. E 104, 024208 (2021) - Published 11 August, 2021

Operating regimes of cavity solitons by virtue of a graphene flake saturable absorber

Jaspreet Kaur Nagi and Soumendu Jana

Phys. Rev. E 104, 024209 (2021) - Published 12 August, 2021

Multiscale physics of rotating detonation waves: Autosolitons and modulational instabilities

James Koch, Mitsuru Kurosaka, Carl Knowlen, and J. Nathan Kutz

Phys. Rev. E 104, 024210 (2021) - Published 12 August, 2021

Period-doubling route to mixed-mode chaos

Naziru M. Awal and Irving R. Epstein

Phys. Rev. E 104, 024211 (2021) - Published 12 August, 2021

Stability and superfluidity of the Bose-Einstein condensate in a two-leg ladder with magnetic field

Yue Jian, Xin Qiao, Jun-Cheng Liang, Zi-Fa Yu, Ai-Xia Zhang, and Ju-Kui Xue

Phys. Rev. E 104, 024212 (2021) - Published 13 August, 2021

Applications of optimal nonlinear control to a whole-brain network of FitzHugh-Nagumo oscillators

Teresa Chouzouris, Nicolas Roth, Caglar Cakan, and Klaus Obermayer

Phys. Rev. E 104, 024213 (2021) - Published 19 August, 2021

Quantum Turing bifurcation: Transition from quantum amplitude death to quantum oscillation death

Biswabibek Bandyopadhyay, Taniya Khatun, and Tanmoy Banerjee

Phys. Rev. E 104, 024214 (2021) - Published 20 August, 2021

Extreme spectral asymmetry of Akhmediev breathers and Fermi-Pasta-Ulam recurrence in a Manakov system

Shao-Chun Chen, Chong Liu, Xiankun Yao, Li-Chen Zhao, and Nail Akhmediev

Phys. Rev. E 104, 024215 (2021) - Published 20 August, 2021

Low-order modeling of the mutual synchronization between two turbulent thermoacoustic oscillators

Yu Guan, Kihun Moon, Kyu Tae Kim, and Larry K. B. Li

Phys. Rev. E 104, 024216 (2021) - Published 23 August, 2021

Dynamical route to ergodicity and quantum scarring in kicked coupled top

Debabrata Mondal, Sudip Sinha, and S. Sinha

Phys. Rev. E 104, 024217 (2021) - Published 23 August, 2021

Effect of gravity on synchronization of two coupled buoyancy-induced turbulent flames

Takumi Tokami, Masaharu Toyoda, Takaya Miyano, Isao T. Tokuda, and Hiroshi Gotoda

Phys. Rev. E 104, 024218 (2021) - Published 24 August, 2021

Fractional nonlinear electrical lattice

Mario I. Molina

Phys. Rev. E 104, 024219 (2021) - Published 24 August, 2021

Estimating the variance of Shannon entropy

Leonardo Ricci, Alessio Perinelli, and Michele Castelluzzo

Phys. Rev. E 104, 024220 (2021) - Published 25 August, 2021

$Q$ -switching bifurcation dynamics of passively mode-locked lasers

N. Akhmediev and J. M. Soto-Crespo

Phys. Rev. E 104, 024221 (2021) - Published 26 August, 2021

Matter waves in atomic-molecular condensates with Feshbach resonance management

F. Kh. Abdullaev, M. Ögren, and J. S. Yuldashev

Phys. Rev. E 104, 024222 (2021) - Published 26 August, 2021

Delay-time distribution in the scattering of short Gaussian pulses in microwave networks

Małgorzata Białous, Piotr Dulian, Adam Sawicki, and Leszek Sirko

Phys. Rev. E 104, 024223 (2021) - Published 30 August, 2021

Ratchet universality in coupled dissipative oscillators without external bias

Pedro J. Martínez and Ricardo Chacón

Phys. Rev. E 104, 024224 (2021) - Published 30 August, 2021

Networks and Complex Systems

Layer reconstruction and missing link prediction of a multilayer network with maximum $a posteriori$ estimation

Junyao Kuang and Caterina Scoglio

Phys. Rev. E 104, 024301 (2021) - Published 2 August, 2021

Asymmetry-induced order in multilayer networks

Everton S. Medeiros, Ulrike Feudel, and Anna Zakharova

Phys. Rev. E 104, 024302 (2021) - Published 3 August, 2021

Symbiotic and antagonistic disease dynamics on networks using bond percolation

Peter Mann, V. Anne Smith, John B. O. Mitchell, and Simon Dobson

Phys. Rev. E 104, 024303 (2021) - Published 3 August, 2021

Exact formula for bond percolation on cliques

Peter Mann, V. Anne Smith, John B. O. Mitchell, Christopher Jefferson, and Simon Dobson

Phys. Rev. E 104, 024304 (2021) - Published 4 August, 2021

Breakdown of random matrix universality in Markov models

Faheem Mosam, Diego Vidaurre, and Eric De Giuli

Phys. Rev. E 104, 024305 (2021) - Published 6 August, 2021

Microscopic edge-based compartmental modeling method for analyzing the susceptible-infected-recovered epidemic spreading on networks

Qingchu Wu and Shufang Chen

Phys. Rev. E 104, 024306 (2021) - Published 9 August, 2021

Towards the Heider balance: Cellular automaton with a global neighborhood

Malgorzata J. Krawczyk, Krzysztof Kulakowski, and Zdzislaw Burda

Phys. Rev. E 104, 024307 (2021) - Published 9 August, 2021

Agent-based neutral competition in two-community networks

Kota Ishida, Beata Oborny, and Michael T. Gastner

Phys. Rev. E 104, 024308 (2021) - Published 9 August, 2021

Detecting hidden layers from spreading dynamics on complex networks

Łukasz G. Gajewski, Jan Chołoniewski, and Mateusz Wilinski

Phys. Rev. E 104, 024309 (2021) - Published 11 August, 2021

Balanced-imbalanced transitions in indirect reciprocity dynamics on networks

Koji Oishi, Shuhei Miyano, Kimmo Kaski, and Takashi Shimada

Phys. Rev. E 104, 024310 (2021) - Published 12 August, 2021

Optimally coordinated traffic diversion by statistical physics

Tak Shing Tai and Chi Ho Yeung

Phys. Rev. E 104, 024311 (2021) - Published 12 August, 2021

Pedestrian flow in two dimensions: Optimal psychological stress leads to less evacuation time and decongestion

M. Ramírez, B. A. Toledo, F. Torres, J. Rogan, J. A. Valdivia, and P. Correa-Burrows

Phys. Rev. E 104, 024312 (2021) - Published 12 August, 2021

Impact of field heterogeneity on the dynamics of the forced Kuramoto model

S. Yoon, E. A. P. Wright, J. F. F. Mendes, and A. V. Goltsev

Phys. Rev. E 104, 024313 (2021) - Published 16 August, 2021

Game-theoretic modeling of collective decision making during epidemics

Mengbin Ye, Lorenzo Zino, Alessandro Rizzo, and Ming Cao

Phys. Rev. E 104, 024314 (2021) - Published 19 August, 2021

Shannon information criterion for low-high diversity transition in Moran and voter models

Gabriella Dantas Franco, Flavia Maria Darcie Marquitti, Lucas D. Fernandes, Dan Braha, and Marcus Aloizio Martinez de Aguiar

Phys. Rev. E 104, 024315 (2021) - Published 25 August, 2021

Dynamics of majority rule on hypergraphs

James Noonan and Renaud Lambiotte

Phys. Rev. E 104, 024316 (2021) - Published 25 August, 2021

Biological Physics

Hysteresis loop area scaling exponents in DNA unzipping by a periodic force: A Langevin dynamics simulation study

Rajeev Kapri

Phys. Rev. E 104, 024401 (2021) - Published 2 August, 2021

Multilayer network structure enhances the coexistence of competitive species

Cong Li, Tian-Jiao Feng, He-Lin Zhang, Da-Hua Chen, Ross Cressman, Jin-Bao Liao, and Yi Tao

Phys. Rev. E 104, 024402 (2021) - Published 3 August, 2021

Motor strategies and adiabatic invariants: The case of rhythmic motion in parabolic flights

N. Boulanger, F. Buisseret, V. Dehouck, F. Dierick, and O. White

Phys. Rev. E 104, 024403 (2021) - Published 4 August, 2021

Two-cell interactions in autologous chemotaxis

Aditya S. Khair

Phys. Rev. E 104, 024404 (2021) - Published 4 August, 2021

Increased oscillatory power in a computational model of the olfactory bulb due to synaptic degeneration

J. Kendall Berry and Daniel Cox

Phys. Rev. E 104, 024405 (2021) - Published 4 August, 2021

Optogenetic control of intracellular flows and cell migration: A comprehensive mathematical analysis with a minimal active gel model

Oliver M. Drozdowski, Falko Ziebert, and Ulrich S. Schwarz

Phys. Rev. E 104, 024406 (2021) - Published 4 August, 2021

Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families

Pierre Barrat-Charlaix, Anna Paola Muntoni, Kai Shimagaki, Martin Weigt, and Francesco Zamponi

Phys. Rev. E 104, 024407 (2021) - Published 6 August, 2021

Steady-state joint distribution for first-order stochastic reaction kinetics

Youming Li, Da-Quan Jiang, and Chen Jia

Phys. Rev. E 104, 024408 (2021) - Published 10 August, 2021

Single-molecule force spectroscopy reveals structural differences of heparan sulfate chains during binding to vitronectin

Katarzyna Herman, Joanna Zemła, Arkadiusz Ptak, and Małgorzata Lekka

Phys. Rev. E 104, 024409 (2021) - Published 11 August, 2021

Efficient and flexible methods for simulating models of time since infection

Joseph D. Peterson and Ronojoy Adhikari

Phys. Rev. E 104, 024410 (2021) - Published 11 August, 2021

Mean-field interactions between living cells in linear and nonlinear elastic matrices

Chaviva Sirote and Yair Shokef

Phys. Rev. E 104, 024411 (2021) - Published 12 August, 2021

Reaction-diffusion spatial modeling of COVID-19: Greece and Andalusia as case examples

P. G. Kevrekidis, J. Cuevas-Maraver, Y. Drossinos, Z. Rapti, and G. A. Kevrekidis

Phys. Rev. E 104, 024412 (2021) - Published 12 August, 2021

Robust rhythmogenesis via spike-timing-dependent plasticity

Gabi Socolovsky and Maoz Shamir

Phys. Rev. E 104, 024413 (2021) - Published 20 August, 2021

EDITORS' SUGGESTION

Extrusion of chromatin loops by a composite loop extrusion factor

Hao Yan, Ivan Surovtsev, Jessica F. Williams, Mary Lou P. Bailey, Megan C. King, and Simon G. J. Mochrie

Phys. Rev. E 104, 024414 (2021) - Published 23 August, 2021

What the odor is not: Estimation by elimination

Vijay Singh, Martin Tchernookov, and Vijay Balasubramanian

Phys. Rev. E 104, 024415 (2021) - Published 25 August, 2021

Background synaptic input modulates the visuospatial working memory

Tao Wang, Jun Sun, Fan Yang, Jie Li, Wei Wang, and Feng Liu

Phys. Rev. E 104, 024416 (2021) - Published 25 August, 2021

EDITORS' SUGGESTION

Active elasticity drives the formation of periodic beading in damaged axons

Davide Riccobelli

Phys. Rev. E 104, 024417 (2021) - Published 30 August, 2021

Polymers

Rheological properties of polymer chains at a copper oxide surface: Impact of the chain length, surface coverage, and grafted polymer shape

José G. Solano Canchaya, Germain Clavier, Sébastien Garruchet, Benoit Latour, Nicolas Martzel, Julien Devémy, Florent Goujon, Alain Dequidt, Ronald Blaak, Etienne Munch, and Patrice Malfreyt

Phys. Rev. E 104, 024501 (2021) - Published 11 August, 2021

Kardar-Parisi-Zhang equation in a half space with flat initial condition and the unbinding of a directed polymer from an attractive wall

Guillaume Barraquand and Pierre Le Doussal

Phys. Rev. E 104, 024502 (2021) - Published 13 August, 2021

Spatial correlations of entangled polymer dynamics

Jihong Ma, Jan-Michael Y. Carrillo, Changwoo Do, Wei-Ren Chen, Péter Falus, Zhiqiang Shen, Kunlun Hong, Bobby G. Sumpter, and Yangyang Wang

Phys. Rev. E 104, 024503 (2021) - Published 26 August, 2021

Colloids, Complex Fluids, and Active Matter

Effect of polydispersity on the dynamics of active Brownian particles

Sameer Kumar, Jay Prakash Singh, Debaprasad Giri, and Shradha Mishra

Phys. Rev. E 104, 024601 (2021) - Published 2 August, 2021

Asymmetric assembly of Lennard-Jones Janus dimers

Sina Safaei, Caleb Todd, Jack Yarndley, Shaun Hendy, and Geoff R. Willmott

Phys. Rev. E 104, 024602 (2021) - Published 13 August, 2021

Capture efficiency of magnetic nanoparticles through the compaction effect of a microparticles column

K. B. Reynoso-Hernández, P. E. Guevara-Pantoja, and G. A. Caballero-Robledo

Phys. Rev. E 104, 024603 (2021) - Published 13 August, 2021

Computational approach to ${(ZnS)}_{i}$ nanoclusters in ionic liquids

Jon Zubeltzu, Jon M. Matxain, and Elixabete Rezabal

Phys. Rev. E 104, 024604 (2021) - Published 16 August, 2021

Heat fluctuations in a harmonic chain of active particles

Deepak Gupta and David A. Sivak

Phys. Rev. E 104, 024605 (2021) - Published 30 August, 2021

Liquid Crystals

Generation of hard twisted photons by charged particles in cholesteric liquid crystals

O. V. Bogdanov, P. O. Kazinski, P. S. Korolev, and G. Yu. Lazarenko

Phys. Rev. E 104, 024701 (2021) - Published 2 August, 2021

Nanofluidics of nematic liquid crystals in hollow capillaries

Izabela Śliwa, Pavel V. Maslennikov, and Alex V. Zakharov

Phys. Rev. E 104, 024702 (2021) - Published 26 August, 2021

Thin smectic liquid crystalline fibrils of chiral rodlike particles

A. Kuhnhold and V. Tänzel

Phys. Rev. E 104, 024703 (2021) - Published 31 August, 2021

Derivation of coarse-grained force fields for buckling-induced topological defects of liquid crystals

Michiaki Sakamoto and Itsuo Hanasaki

Phys. Rev. E 104, 024704 (2021) - Published 31 August, 2021

Films and Interfaces

Interface thermal resistance induced by geometric shape mismatch: A multiparticle Lorentz gas model

Tingting Wang, Yu Yang, Yuancheng Wu, Lei Xu, Dengke Ma, and Lifa Zhang

Phys. Rev. E 104, 024801 (2021) - Published 16 August, 2021

Granular Materials

Quasistatic kinetic avalanches and self-organized criticality in deviatorically loaded granular media

Jordi Baró, Mehdi Pouragha, Richard Wan, and Jörn Davidsen

Phys. Rev. E 104, 024901 (2021) - Published 2 August, 2021

Effect of two parallel intruders on total work during granular penetrations

Swapnil Pravin, Brian Chang, Endao Han, Lionel London, Daniel I. Goldman, Heinrich M. Jaeger, and S. Tonia Hsieh

Phys. Rev. E 104, 024902 (2021) - Published 5 August, 2021

Linear response in the uniformly heated granular gas

Bernardo Sánchez-Rey and Antonio Prados

Phys. Rev. E 104, 024903 (2021) - Published 23 August, 2021

Anomalous elasticity and plastic screening in amorphous solids

Anaël Lemaître, Chandana Mondal, Michael Moshe, Itamar Procaccia, Saikat Roy, and Keren Screiber-Re'em

Phys. Rev. E 104, 024904 (2021) - Published 24 August, 2021

Fluid Dynamics

Droplet plume emission during plasmonic bubble growth in ternary liquids

Xiaolai Li, Yibo Chen, Yuliang Wang, Kai Leong Chong, Roberto Verzicco, Harold J. W. Zandvliet, and Detlef Lohse

Phys. Rev. E 104, 025101 (2021) - Published 2 August, 2021

Competition of overstability and stabilizing effects in viscoelastic thermovibrational flow

Alessio Boaro and Marcello Lappa

Phys. Rev. E 104, 025102 (2021) - Published 11 August, 2021

Two separate decay timescales of a detonation wave modeled by the Burgers equation and their relation to its chaotic dynamics

S. S.-M. Lau-Chapdelaine and M. I. Radulescu

Phys. Rev. E 104, 025103 (2021) - Published 13 August, 2021

Influence of particle-fluid density ratio on the dynamics of finite-size particles in homogeneous isotropic turbulent flows

Jie Shen, Zhiming Lu, Lian-Ping Wang, and Cheng Peng

Phys. Rev. E 104, 025109 (2021) - Published 26 August, 2021

Reflection and transmission of an incident solitary wave at an interface of a binary complex plasma in a microgravity condition

Xue-Ren Hong, Wei Sun, Mierk Schwabe, Cheng-Ran Du, and Wen-Shan Duan

Phys. Rev. E 104, 025206 (2021) - Published 23 August, 2021

Radial spatiotemporal evolution of rf magnetic field and plasma current in a very-high-frequency plasma source over a wide range of plasma density and pressure

Jianping Zhao, Peter L. G. Ventzek, Barton Lane, Toshihiko Iwao, and Kiyotaka Ishibashi

Phys. Rev. E 104, 025207 (2021) - Published 24 August, 2021

Computational Physics

High-order semi-Lagrangian kinetic scheme for compressible turbulence

Dominik Wilde, Andreas Krämer, Dirk Reith, and Holger Foysi

Phys. Rev. E 104, 025301 (2021) - Published 6 August, 2021

Stochastic characterization and reconstruction of material microstructures for establishment of process-structure-property linkage using the deep generative model

Satoshi Noguchi and Junya Inoue

Phys. Rev. E 104, 025302 (2021) - Published 9 August, 2021

Thermodynamics of hydrophobic-polar model proteins on the face-centered cubic lattice

Matthew S. Wilson and David P. Landau

Phys. Rev. E 104, 025303 (2021) - Published 12 August, 2021

Steepest-descent algorithm for simulating plasma-wave caustics via metaplectic geometrical optics

Sean M. Donnelly, Nicolas A. Lopez, and I. Y. Dodin

Phys. Rev. E 104, 025304 (2021) - Published 13 August, 2021

Reducing autocorrelation time in determinant quantum Monte Carlo using the Wang-Landau algorithm: Application to the Holstein model

Meng Yao, Da Wang, and Qiang-Hua Wang

Phys. Rev. E 104, 025305 (2021) - Published 16 August, 2021

Exact transparent boundary condition for the multidimensional Schrödinger equation in hyperrectangular computational domain

R. M. Feshchenko and A. V. Popov

Phys. Rev. E 104, 025306 (2021) - Published 17 August, 2021

Schrödinger principal-component analysis: On the duality between principal-component analysis and the Schrödinger equation

Ziming Liu, Sitian Qian, Yixuan Wang, Yuxuan Yan, and Tianyi Yang

Phys. Rev. E 104, 025307 (2021) - Published 20 August, 2021

COMMENTS

Comment on “Turbulent compressible fluid: Renormalization group analysis, scaling regimes, and anomalous scaling of advected scalar fields”

Juha Honkonen

Phys. Rev. E 104, 027101 (2021) - Published 30 August, 2021