Volume 104, Issue 1

July 2021

Browse Issues:

HIGHLIGHTED ARTICLES

FEATURED IN PHYSICS

Diffusive wave dynamics beyond the continuum limit

Paul B. Dieterle and Ariel Amir

Phys. Rev. E 104, 014406 (2021) - Published 15 July, 2021

A new model shows that the properties of waves produced in a cell-signaling process strongly depend on whether the cells are considered to be discrete entities or a collective mass.

FEATURED IN PHYSICS

LETTER

Self-organized multistability in the forest fire model

Diego Rybski, Van Butsic, and Jan W. Kantelhardt

Phys. Rev. E 104, L012201 (2021) - Published 29 July, 2021

Self-organizing properties, unnoticed for decades, are observed in changes in the density of trees in a forest that can catch fire.

EDITORS' SUGGESTION

Second-harmonic generation as a minimal model of turbulence

N. Vladimirova, M. Shavit, S. Belan, and G. Falkovich

Phys. Rev. E 104, 014129 (2021) - Published 22 July, 2021

A system of two coupled modes can be a minimal model of a turbulent cascade, when one mode is pumped and the other damped. The authors use entropy and mutual information to study the statistics of this system, and explore the difference between the direct and inverse cascades.

EDITORS' SUGGESTION

Node differentiation dynamics along the route to synchronization in complex networks

Christophe Letellier, Irene Sendiña-Nadal, Ludovico Minati, and I. Leyva

Phys. Rev. E 104, 014303 (2021) - Published 2 July, 2021

As a complex network system progresses toward synchronization, the dynamics of individual nodes is of interest. The authors characterize stages in the progression with a complexity measure they have recently introduced. They explore a nonmonotonic relationship found between the complexity of node dynamics and coupling strength and observe that higher and lower degree nodes exhibit different paths toward synchronization.

EDITORS' SUGGESTION

Metachronal waves in concentrations of swimming Turbatrix aceti nematodes and an oscillator chain model for their coordinated motions

A. C. Quillen, A. Peshkov, Esteban Wright, and Sonia McGaffigan

Phys. Rev. E 104, 014412 (2021) - Published 29 July, 2021

Nematode worms known as vinegar eels collectively exhibit traveling waves when swimming near the edge of a drop of liquid. The authors analyze this behavior and construct a model based on a chain of interacting oscillators that approximately matches their observations.

EDITORS' SUGGESTION

Two-dimensional Brownian motion of anisotropic dimers

Daniel B. Mayer, Erick Sarmiento-Gómez, Manuel A. Escobedo-Sánchez, Juan Pablo Segovia-Gutiérrez, Christina Kurzthaler, Stefan U. Egelhaaf, and Thomas Franosch

Phys. Rev. E 104, 014605 (2021) - Published 16 July, 2021

When nonspherical particles perform Brownian motion, the diffusion is anisotropic and there is a coupling between the translational and rotational motion. Here the authors study the diffusion of dimers in two dimensions with both theory and experiment, and find good agreement between the two.

LETTERS

Statistical Physics

LETTER

Spontaneous dimensional reduction and ground state degeneracy in a simple chain model

Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar

Phys. Rev. E 104, L012101 (2021) - Published 6 July, 2021

LETTER

Dynamical phase transition in the first-passage probability of a Brownian motion

B. Besga, F. Faisant, A. Petrosyan, S. Ciliberto, and Satya N. Majumdar

Phys. Rev. E 104, L012102 (2021) - Published 13 July, 2021

LETTER

Violating the thermodynamic uncertainty relation in the three-level maser

Alex Arash Sand Kalaee, Andreas Wacker, and Patrick P. Potts

Phys. Rev. E 104, L012103 (2021) - Published 26 July, 2021

Nonlinear Dynamics and Chaos

FEATURED IN PHYSICS

LETTER

Self-organized multistability in the forest fire model

Diego Rybski, Van Butsic, and Jan W. Kantelhardt

Phys. Rev. E 104, L012201 (2021) - Published 29 July, 2021

Self-organizing properties, unnoticed for decades, are observed in changes in the density of trees in a forest that can catch fire.

Networks and Complex Systems

LETTER

Stability of traffic breakup patterns in urban networks

Marco Cogoni and Giovanni Busonera

Phys. Rev. E 104, L012301 (2021) - Published 13 July, 2021

Polymers

LETTER

Marginally compact phase and ordered ground states in a model polymer with side spheres

Tatjana Škrbić, Trinh Xuan Hoang, Achille Giacometti, Amos Maritan, and Jayanth R. Banavar

Phys. Rev. E 104, L012501 (2021) - Published 26 July, 2021

Colloids, Complex Fluids, and Active Matter

LETTER

Active Brownian motion with directional reversals

Ion Santra, Urna Basu, and Sanjib Sabhapandit

Phys. Rev. E 104, L012601 (2021) - Published 13 July, 2021

LETTER

Glass-liquid and glass-gel transitions of soft-shell particles

Lara Frenzel, Michael Dartsch, Gerard Martí Balaguer, Fabian Westermeier, Gerhard Grübel, and Felix Lehmkühler

Phys. Rev. E 104, L012602 (2021) - Published 15 July, 2021

LETTER

Unusual stability of protein molecules in the presence of multivalent counterions

Sugam Kumar, Debasish Saha, Debes Ray, Sohrab Abbas, and Vinod K. Aswal

Phys. Rev. E 104, L012603 (2021) - Published 29 July, 2021

Fluid Dynamics

LETTER

Observation of a novel flow regime caused by finite electric wall conductance in an initially turbulent magnetohydrodynamic duct flow

Artem Blishchik and Saša Kenjereš

Phys. Rev. E 104, L013101 (2021) - Published 30 July, 2021

Plasma Physics

LETTER

Thermal decoupling of deuterium and tritium during the inertial confinement fusion shock-convergence phase

N. V. Kabadi et al.

Phys. Rev. E 104, L013201 (2021) - Published 15 July, 2021

ARTICLES

Statistical Physics

Standard and inverse site percolation of straight rigid rods on triangular lattices: Isotropic and perfectly oriented deposition and removal

L. S. Ramirez, P. M. Pasinetti, W. Lebrecht, and A. J. Ramirez-Pastor

Phys. Rev. E 104, 014101 (2021) - Published 2 July, 2021

Finite-size effects in the microscopic critical properties of jammed configurations: A comprehensive study of the effects of different types of disorder

Patrick Charbonneau, Eric I. Corwin, R. Cameron Dennis, Rafael Díaz Hernández Rojas, Harukuni Ikeda, Giorgio Parisi, and Federico Ricci-Tersenghi

Phys. Rev. E 104, 014102 (2021) - Published 2 July, 2021

Explaining the specific heat of liquids based on instantaneous normal modes

Matteo Baggioli and Alessio Zaccone

Phys. Rev. E 104, 014103 (2021) - Published 6 July, 2021

Jamming densities of random sequential adsorption on $d$ -dimensional cubic lattices

Asher Baram and Azi Lipshtat

Phys. Rev. E 104, 014104 (2021) - Published 6 July, 2021

Thermodynamics of a Brownian particle in a nonconfining potential

Oded Farago

Phys. Rev. E 104, 014105 (2021) - Published 6 July, 2021

Analytical results for a minimalist thermal diode

Lucianno Defaveri and Celia Anteneodo

Phys. Rev. E 104, 014106 (2021) - Published 6 July, 2021

Metastable behavior of the spin- $s$ Ising and Blume-Capel ferromagnets: A Monte Carlo study

Moumita Naskar, Muktish Acharyya, Erol Vatansever, and Nikolaos G. Fytas

Phys. Rev. E 104, 014107 (2021) - Published 7 July, 2021

Symmetry-induced fluctuation relations in open quantum systems

Stefano Marcantoni, Carlos Pérez-Espigares, and Juan P. Garrahan

Phys. Rev. E 104, 014108 (2021) - Published 9 July, 2021

Universal function of the nonequilibrium phase transition of a nonlinear Pólya urn

Kazuaki Nakayama and Shintaro Mori

Phys. Rev. E 104, 014109 (2021) - Published 12 July, 2021

Lindbladian approximation beyond ultraweak coupling

Tobias Becker, Ling-Na Wu, and André Eckardt

Phys. Rev. E 104, 014110 (2021) - Published 12 July, 2021

Channels, measurements, and postselection in quantum thermodynamics

Tom Purves and Anthony J. Short

Phys. Rev. E 104, 014111 (2021) - Published 12 July, 2021

Memory order decomposition of symbolic sequences

Unai Alvarez-Rodriguez and Vito Latora

Phys. Rev. E 104, 014112 (2021) - Published 12 July, 2021

Classical description of the parameter space geometry in the Dicke and Lipkin-Meshkov-Glick models

Diego Gonzalez, Daniel Gutiérrez-Ruiz, and J. David Vergara

Phys. Rev. E 104, 014113 (2021) - Published 12 July, 2021

Debye Brownian oscillator and Debye-type noise: A series solution versus Monte Carlo simulation

Qian Qiu and Jing-Dong Bao

Phys. Rev. E 104, 014114 (2021) - Published 13 July, 2021

Spinodal-assisted nucleation in the two-dimensional $q -$ state Potts model with short-to-long-range interactions

G. Gagliardi and F. Macheda

Phys. Rev. E 104, 014115 (2021) - Published 13 July, 2021

Spectral statistics of light in one-dimensional graphene-based photonic crystals

Ziba Saleki, A. J. Majarshin, Yan-An Luo, and De-Long Zhang

Phys. Rev. E 104, 014116 (2021) - Published 14 July, 2021

Classical statistical mechanics in the grand canonical ensemble

Philipp Ströker and Karsten Meier

Phys. Rev. E 104, 014117 (2021) - Published 14 July, 2021

Subdiffusion equation with Caputo fractional derivative with respect to another function

Tadeusz Kosztołowicz and Aldona Dutkiewicz

Phys. Rev. E 104, 014118 (2021) - Published 14 July, 2021

Breaking of time-reversal symmetry for a particle in a parabolic potential that is subjected to Lévy noise: Theory and an application to solar flare data

Steven Yuvan and Martin Bier

Phys. Rev. E 104, 014119 (2021) - Published 15 July, 2021

Directed ratchet transport of cold atoms and fluxons driven by biharmonic fields: A unified view

Ricardo Chacón and Pedro J. Martínez

Phys. Rev. E 104, 014120 (2021) - Published 16 July, 2021

Geometric Brownian motion under stochastic resetting: A stationary yet nonergodic process

Viktor Stojkoski, Trifce Sandev, Ljupco Kocarev, and Arnab Pal

Phys. Rev. E 104, 014121 (2021) - Published 19 July, 2021

Beyond the adiabatic limit in systems with fast environments: A $τ$ -leaping algorithm

Ernesto Berríos-Caro and Tobias Galla

Phys. Rev. E 104, 014122 (2021) - Published 19 July, 2021

Anomalous diffusion driven by the redistribution of internal stresses

J. Cleland and M. A. K. Williams

Phys. Rev. E 104, 014123 (2021) - Published 20 July, 2021

Functional-renormalization-group approach to classical liquids with short-range repulsion: A scheme without repulsive reference system

Takeru Yokota, Jun Haruyama, and Osamu Sugino

Phys. Rev. E 104, 014124 (2021) - Published 21 July, 2021

Optimal non-Gaussian search with stochastic resetting

Aleksander Stanislavsky and Aleksander Weron

Phys. Rev. E 104, 014125 (2021) - Published 21 July, 2021

Relaxation process of magnetic friction under sudden changes in velocity

Hisato Komatsu

Phys. Rev. E 104, 014126 (2021) - Published 22 July, 2021

Critical pore radius and transport properties of disordered hard- and overlapping-sphere models

Michael A. Klatt, Robert M. Ziff, and Salvatore Torquato

Phys. Rev. E 104, 014127 (2021) - Published 22 July, 2021

EDITORS' SUGGESTION

Second-harmonic generation as a minimal model of turbulence

N. Vladimirova, M. Shavit, S. Belan, and G. Falkovich

Phys. Rev. E 104, 014129 (2021) - Published 22 July, 2021

Site-bond percolation in two-dimensional kagome lattices: Analytical approach and numerical simulations

M. I. González-Flores, A. A. Torres, W. Lebrecht, and A. J. Ramirez-Pastor

Phys. Rev. E 104, 014130 (2021) - Published 23 July, 2021

Theory and simulation of shock waves: Entropy production and energy conversion

Bjørn Hafskjold, Dick Bedeaux, Signe Kjelstrup, and Øivind Wilhelmsen

Phys. Rev. E 104, 014131 (2021) - Published 23 July, 2021

Statistical mechanics study of the introduction of a vaccine against COVID-19 disease

Hilla De-Leon and Francesco Pederiva

Phys. Rev. E 104, 014132 (2021) - Published 26 July, 2021

Exactly solvable model of a slightly fluctuating ratchet

V. M. Rozenbaum, T. Ye. Korochkova, I. V. Shapochkina, and L. I. Trakhtenberg

Phys. Rev. E 104, 014133 (2021) - Published 26 July, 2021

Magnetic phase diagram of a spin-1/2 $X X Z$ chain with modulated Dzyaloshinskii-Moriya interaction

G. I. Japaridze, Hadi Cheraghi, and Saeed Mahdavifar

Phys. Rev. E 104, 014134 (2021) - Published 26 July, 2021

Phase transitions in Schloegl's second model for autocatalysis on a Bethe lattice

Da-Jiang Liu, Chi-Jen Wang, and James W. Evans

Phys. Rev. E 104, 014135 (2021) - Published 26 July, 2021

Role of topology in determining the precision of a finite thermometer

Alessandro Candeloro, Luca Razzoli, Paolo Bordone, and Matteo G. A. Paris

Phys. Rev. E 104, 014136 (2021) - Published 26 July, 2021

Neuronal avalanches in Watts-Strogatz networks of stochastic spiking neurons

Renata Pazzini, Osame Kinouchi, and Ariadne A. Costa

Phys. Rev. E 104, 014137 (2021) - Published 26 July, 2021

Exclusion process on two intersecting lanes with constrained resources: Symmetry breaking and shock dynamics

Akriti Jindal and Arvind Kumar Gupta

Phys. Rev. E 104, 014138 (2021) - Published 27 July, 2021

Description of a stochastic system by a nonadapted stochastic process

Piero Olla

Phys. Rev. E 104, 014139 (2021) - Published 27 July, 2021

Lattice gauge theories in the presence of a linear gauge-symmetry breaking

Claudio Bonati, Andrea Pelissetto, and Ettore Vicari

Phys. Rev. E 104, 014140 (2021) - Published 27 July, 2021

Quantum kinetic equation for the Wigner function and reduction to the Boltzmann transport equation under discrete impurities

Nobuyuki Sano

Phys. Rev. E 104, 014141 (2021) - Published 27 July, 2021

Phase distribution including a bubblelike region in supercritical fluid

Jinliang Xu, Yan Wang, and Xiaojing Ma

Phys. Rev. E 104, 014142 (2021) - Published 27 July, 2021

Hamiltonian and exclusion statistics approach to discrete forward-moving paths

Stéphane Ouvry and Alexios P. Polychronakos

Phys. Rev. E 104, 014143 (2021) - Published 28 July, 2021

Criticality in the duration of quasistationary state

Antonio Rodríguez, Fernando D. Nobre, and Constantino Tsallis

Phys. Rev. E 104, 014144 (2021) - Published 29 July, 2021

Topological sectors, dimer correlations, and monomers from the transfer-matrix solution of the dimer model

Neil Wilkins and Stephen Powell

Phys. Rev. E 104, 014145 (2021) - Published 29 July, 2021

Entanglement distribution in the quantum symmetric simple exclusion process

Denis Bernard and Lorenzo Piroli

Phys. Rev. E 104, 014146 (2021) - Published 29 July, 2021

Analytic solution of the two-star model with correlated degrees

Maíra Bolfe, Fernando L. Metz, Edgar Guzmán-González, and Isaac Pérez Castillo

Phys. Rev. E 104, 014147 (2021) - Published 29 July, 2021

Environment-dependent vibrational heat transport in molecular junctions: Rectification, quantum effects, vibrational mismatch

Jayasmita Behera and Malay Bandyopadhyay

Phys. Rev. E 104, 014148 (2021) - Published 30 July, 2021

Two coupled double quantum-dot systems as a working substance for heat machines

Jefferson Luan Diniz de Oliveira, Moisés Rojas, and Cleverson Filgueiras

Phys. Rev. E 104, 014149 (2021) - Published 30 July, 2021

Simulation of a generalized asset exchange model with economic growth and wealth distribution

Kang K. L. Liu, N. Lubbers, W. Klein, J. Tobochnik, B. M. Boghosian, and Harvey Gould

Phys. Rev. E 104, 014150 (2021) - Published 30 July, 2021

Mean-field theory of an asset exchange model with economic growth and wealth distribution

W. Klein, N. Lubbers, Kang K. L. Liu, T. Khouw, and Harvey Gould

Phys. Rev. E 104, 014151 (2021) - Published 30 July, 2021

Nonlinear Dynamics and Chaos

Multivalley dark solitons in multicomponent Bose-Einstein condensates with repulsive interactions

Yan-Hong Qin, Li-Chen Zhao, Zeng-Qiang Yang, and Liming Ling

Phys. Rev. E 104, 014201 (2021) - Published 2 July, 2021

Subharmonics and superharmonics of the weak field in a driven two-level quantum system: Vibrational resonance enhancement

Prasun Sarkar, Shibashis Paul, and Deb Shankar Ray

Phys. Rev. E 104, 014202 (2021) - Published 2 July, 2021

Suppression of synchronous spiking in two interacting populations of excitatory and inhibitory quadratic integrate-and-fire neurons

Kestutis Pyragas, Augustinas P. Fedaravičius, and Tatjana Pyragienė

Phys. Rev. E 104, 014203 (2021) - Published 6 July, 2021

Binary mixtures of locally coupled mobile oscillators

Gonçalo Paulo and Mykola Tasinkevych

Phys. Rev. E 104, 014204 (2021) - Published 9 July, 2021

Predicting amplitude death with machine learning

Rui Xiao, Ling-Wei Kong, Zhong-Kui Sun, and Ying-Cheng Lai

Phys. Rev. E 104, 014205 (2021) - Published 12 July, 2021

Nonlinear photoassociation through exotic orbits

M. D. Forlevesi, R. Egydio de Carvalho, and Emanuel F. de Lima

Phys. Rev. E 104, 014206 (2021) - Published 12 July, 2021

Destruction and resurgence of the quasiperiodic shearless attractor

R. Simile Baroni and R. Egydio de Carvalho

Phys. Rev. E 104, 014207 (2021) - Published 12 July, 2021

Localized and extended patterns in the cubic-quintic Swift-Hohenberg equation on a disk

Nicolás Verschueren, Edgar Knobloch, and Hannes Uecker

Phys. Rev. E 104, 014208 (2021) - Published 14 July, 2021

Optimal and efficient generation of sine-Gordon breathers

Xinyun Liu, Mei Wen, Xiezhi Mao, and Xinlong Wang

Phys. Rev. E 104, 014209 (2021) - Published 14 July, 2021

Symmetry reduction for deep reinforcement learning active control of chaotic spatiotemporal dynamics

Kevin Zeng and Michael D. Graham

Phys. Rev. E 104, 014210 (2021) - Published 16 July, 2021

Synchronization of coupled Kuramoto oscillators under resource constraints

Keith A. Kroma-Wiley, Peter J. Mucha, and Danielle S. Bassett

Phys. Rev. E 104, 014211 (2021) - Published 19 July, 2021

Structure formation in a conserved mass model of a set of individuals interacting with attractive and repulsive forces

Sergio E. Mangioni, Matías G. dell'Erba, and Bruno Combi

Phys. Rev. E 104, 014212 (2021) - Published 19 July, 2021

Topological charge-density method of identifying phase singularities in cardiac fibrillation

Yin-Jie He, Qi-Hao Li, Kuangshi Zhou, Ruhong Jiang, Chenyang Jiang, Jun-Ting Pan, Dafang Zheng, Bo Zheng, and Hong Zhang

Phys. Rev. E 104, 014213 (2021) - Published 20 July, 2021

Bending of pinned dust-ion acoustic solitary waves in presence of charged space debris

S. P. Acharya, A. Mukherjee, and M. S. Janaki

Phys. Rev. E 104, 014214 (2021) - Published 26 July, 2021

Generalized Haus master equation model for mode-locked class- $B$ lasers

Michel Nizette and Andrei G. Vladimirov

Phys. Rev. E 104, 014215 (2021) - Published 26 July, 2021

Transition to synchrony in a three-dimensional swarming model with helical trajectories

Chunming Zheng, Ralf Toenjes, and Arkady Pikovsky

Phys. Rev. E 104, 014216 (2021) - Published 26 July, 2021

Systematic vector solitary waves from their linear limits in one-dimensional $n$ -component Bose-Einstein condensates

Wenlong Wang

Phys. Rev. E 104, 014217 (2021) - Published 27 July, 2021

Fragile many-body ergodicity from action diffusion

Thudiyangal Mithun, Carlo Danieli, M. V. Fistul, B. L. Altshuler, and Sergej Flach

Phys. Rev. E 104, 014218 (2021) - Published 27 July, 2021

Dirac particles on periodic quantum graphs

J. R. Yusupov, K. K. Sabirov, and D. U. Matrasulov

Phys. Rev. E 104, 014219 (2021) - Published 28 July, 2021

Analytical approximations for the speed of pacemaker-generated waves

Jan Rombouts and Lendert Gelens

Phys. Rev. E 104, 014220 (2021) - Published 29 July, 2021

Nonequilibrium thermodynamics of glycolytic traveling wave: Benjamin-Feir instability

Premashis Kumar and Gautam Gangopadhyay

Phys. Rev. E 104, 014221 (2021) - Published 30 July, 2021

Networks and Complex Systems

Energy cost study for controlling complex social networks with conformity behavior

Hong Chen and Ee Hou Yong

Phys. Rev. E 104, 014301 (2021) - Published 2 July, 2021

Cohesive communities in dynamic brain functional networks

Yongchen Fan, Qiang Fan, Lv Zhou, Rong Wang, Pan Lin, and Ying Wu

Phys. Rev. E 104, 014302 (2021) - Published 2 July, 2021

EDITORS' SUGGESTION

Node differentiation dynamics along the route to synchronization in complex networks

Christophe Letellier, Irene Sendiña-Nadal, Ludovico Minati, and I. Leyva

Phys. Rev. E 104, 014303 (2021) - Published 2 July, 2021

Moderate immigration may promote a peak of cooperation among natives

Alessandra F. Lütz, Marco A. Amaral, and Lucas Wardil

Phys. Rev. E 104, 014304 (2021) - Published 6 July, 2021

Wealth exchange models and machine learning: Finding optimal risk strategies in multiagent economic systems

Julian Neñer and María Fabiana Laguna

Phys. Rev. E 104, 014305 (2021) - Published 7 July, 2021

Influence of individual nodes for continuous-time susceptible-infected-susceptible dynamics on synthetic and real-world networks

Alfredo De Bellis, Romualdo Pastor-Satorras, and Claudio Castellano

Phys. Rev. E 104, 014306 (2021) - Published 8 July, 2021

Self-initiated behavioral change and disease resurgence on activity-driven networks

Nicolò Gozzi, Martina Scudeler, Daniela Paolotti, Andrea Baronchelli, and Nicola Perra

Phys. Rev. E 104, 014307 (2021) - Published 12 July, 2021

Reservoir computing on epidemic spreading: A case study on COVID-19 cases

Subrata Ghosh, Abhishek Senapati, Arindam Mishra, Joydev Chattopadhyay, Syamal K. Dana, Chittaranjan Hens, and Dibakar Ghosh

Phys. Rev. E 104, 014308 (2021) - Published 16 July, 2021

Finite-size effects on the convergence time in continuous-opinion dynamics

Hang-Hyun Jo and Naoki Masuda

Phys. Rev. E 104, 014309 (2021) - Published 19 July, 2021

Scaling behavior of information entropy in explosive percolation transitions

Yejun Kang and Young Sul Cho

Phys. Rev. E 104, 014310 (2021) - Published 22 July, 2021

Effect of individual differences on the jamming transition in traffic flow

Yi-Chieh Lai and Kuo-An Wu

Phys. Rev. E 104, 014311 (2021) - Published 23 July, 2021

Individual-driven versus interaction-driven burstiness in human dynamics: The case of Wikipedia edit history

Jeehye Choi, Takayuki Hiraoka, and Hang-Hyun Jo

Phys. Rev. E 104, 014312 (2021) - Published 26 July, 2021

Social distancing in pedestrian dynamics and its effect on disease spreading

Sina Sajjadi, Alireza Hashemi, and Fakhteh Ghanbarnejad

Phys. Rev. E 104, 014313 (2021) - Published 26 July, 2021

Biological Physics

Approximating gene transcription dynamics using steady-state formulas

Feng Jiao, Genghong Lin, and Jianshe Yu

Phys. Rev. E 104, 014401 (2021) - Published 2 July, 2021

Building blocks of protein structures: Physics meets biology

Tatjana Škrbić, Amos Maritan, Achille Giacometti, George D. Rose, and Jayanth R. Banavar

Phys. Rev. E 104, 014402 (2021) - Published 8 July, 2021

Stochastic self-assembly of reaction-diffusion patterns in synaptic membranes

Everest Law, Yiwei Li, Osman Kahraman, and Christoph A. Haselwandter

Phys. Rev. E 104, 014403 (2021) - Published 8 July, 2021

Lattice protein design using Bayesian learning

Tomoei Takahashi, George Chikenji, and Kei Tokita

Phys. Rev. E 104, 014404 (2021) - Published 8 July, 2021

Contact inhibition of locomotion generates collective cell migration without chemoattractants in an open domain

Hamid Khataee, Andras Czirok, and Zoltan Neufeld

Phys. Rev. E 104, 014405 (2021) - Published 12 July, 2021

FEATURED IN PHYSICS

Diffusive wave dynamics beyond the continuum limit

Paul B. Dieterle and Ariel Amir

Phys. Rev. E 104, 014406 (2021) - Published 15 July, 2021

A new model shows that the properties of waves produced in a cell-signaling process strongly depend on whether the cells are considered to be discrete entities or a collective mass.

Nonequilibrium model of short-range repression in gene transcription regulation

F. E. Garbuzov and V. V. Gursky

Phys. Rev. E 104, 014407 (2021) - Published 19 July, 2021

Kinetic assays of DNA polymerase fidelity: A theoretical perspective beyond Michaelis-Menten kinetics

Qiu-Shi Li, Yao-Gen Shu, Zhong-Can Ou-Yang, and Ming Li

Phys. Rev. E 104, 014408 (2021) - Published 19 July, 2021

Choosing dynamical systems that predict weak input

Sarah E. Marzen

Phys. Rev. E 104, 014409 (2021) - Published 21 July, 2021

Vesicle budding induced by binding of curvature-inducing proteins

Hiroshi Noguchi

Phys. Rev. E 104, 014410 (2021) - Published 26 July, 2021

Nonequilibrium brain dynamics as a signature of consciousness

Yonatan Sanz Perl, Hernán Bocaccio, Carla Pallavicini, Ignacio Pérez-Ipiña, Steven Laureys, Helmut Laufs, Morten Kringelbach, Gustavo Deco, and Enzo Tagliazucchi

Phys. Rev. E 104, 014411 (2021) - Published 28 July, 2021

EDITORS' SUGGESTION

Metachronal waves in concentrations of swimming Turbatrix aceti nematodes and an oscillator chain model for their coordinated motions

A. C. Quillen, A. Peshkov, Esteban Wright, and Sonia McGaffigan

Phys. Rev. E 104, 014412 (2021) - Published 29 July, 2021

Polymers

Monte Carlo simulation of a lattice model for the dynamics of randomly branching double-folded ring polymers

Elham Ghobadpour, Max Kolb, Mohammad Reza Ejtehadi, and Ralf Everaers

Phys. Rev. E 104, 014501 (2021) - Published 13 July, 2021

Strain-induced self-assembly of crystallites in elastomers

R. Hentschke and J. Plagge

Phys. Rev. E 104, 014502 (2021) - Published 14 July, 2021

Long-range correlations in pinned athermal networks

Debankur Das, Pappu Acharya, and Kabir Ramola

Phys. Rev. E 104, 014503 (2021) - Published 19 July, 2021

Flexible, charged biopolymers in monovalent and mixed-valence salt: Regimes of anomalous electrostatic stiffening and of salt insensitivity

Sarah N. Innes-Gold, David R. Jacobson, Philip A. Pincus, Mark J. Stevens, and Omar A. Saleh

Phys. Rev. E 104, 014504 (2021) - Published 19 July, 2021

Solution landscapes of the diblock copolymer-homopolymer model under two-dimensional confinement

Zhen Xu, Yucen Han, Jianyuan Yin, Bing Yu, Yasumasa Nishiura, and Lei Zhang

Phys. Rev. E 104, 014505 (2021) - Published 29 July, 2021

Colloids, Complex Fluids, and Active Matter

Energy rectification in active gyroscopic networks under time-periodic modulations

Zhenghan Liao and Suriyanarayanan Vaikuntanathan

Phys. Rev. E 104, 014601 (2021) - Published 7 July, 2021

Curved ratchets improve bacteria rectification in microfluidic devices

Simone Coppola and Vasily Kantsler

Phys. Rev. E 104, 014602 (2021) - Published 8 July, 2021

Complete absorption of topologically protected waves

Guido Baardink, Gino Cassella, Luke Neville, Paul A. Milewski, and Anton Souslov

Phys. Rev. E 104, 014603 (2021) - Published 9 July, 2021

Rheology of granular liquids in extensional flows: Beyond the $μ (I)$ -law

O. Coquand and M. Sperl

Phys. Rev. E 104, 014604 (2021) - Published 12 July, 2021

EDITORS' SUGGESTION

Two-dimensional Brownian motion of anisotropic dimers

Daniel B. Mayer, Erick Sarmiento-Gómez, Manuel A. Escobedo-Sánchez, Juan Pablo Segovia-Gutiérrez, Christina Kurzthaler, Stefan U. Egelhaaf, and Thomas Franosch

Phys. Rev. E 104, 014605 (2021) - Published 16 July, 2021

Ordering kinetics in the active model $B$

Sudipta Pattanayak, Shradha Mishra, and Sanjay Puri

Phys. Rev. E 104, 014606 (2021) - Published 22 July, 2021

Mesoscopic clustering behavior of thermophoretic-type active particle suspension under quasi-one-dimensional microconfinement

Chong-Wai Io and Yu-Yao Lee

Phys. Rev. E 104, 014607 (2021) - Published 29 July, 2021

Reduced dynamics of a one-dimensional Janus particle

Pavol Kalinay

Phys. Rev. E 104, 014608 (2021) - Published 30 July, 2021

Liquid Crystals

Conically degenerate anchoring effect in planar nematic-liquid-crystal shells

Seyed Reza Seyednejad and Mohammad Reza Mozaffari

Phys. Rev. E 104, 014701 (2021) - Published 1 July, 2021

Dynamics of capillary coalescence and breakup: Quasi-two-dimensional nematic and isotropic droplets

P. V. Dolganov, A. S. Zverev, K. D. Baklanova, and V. K. Dolganov

Phys. Rev. E 104, 014702 (2021) - Published 12 July, 2021

Nematoelasticity of hybrid molecular-colloidal liquid crystals

B. Senyuk, H. Mundoor, I. I. Smalyukh, and H. H. Wensink

Phys. Rev. E 104, 014703 (2021) - Published 19 July, 2021

Simple molecular model for ferroelectric nematic liquid crystals exhibited by small rodlike mesogens

N. V. Madhusudana

Phys. Rev. E 104, 014704 (2021) - Published 21 July, 2021

Variety of subphase emerging sequences, the frustration of three main phases, $Sm C_{A}^{}$ , $Sm C^{}$ , and $Sm A$ , and the long-range interlayer interactions

Atsuo Fukuda, Jagdish K. Vij, and Yoichi Takanishi

Phys. Rev. E 104, 014705 (2021) - Published 26 July, 2021

Interactions of charged microrods in chiral nematic liquid crystals

Muhammed Rasi M., Ravi Kumar Pujala, Sathyanarayana Paladugu, and Surajit Dhara

Phys. Rev. E 104, 014706 (2021) - Published 27 July, 2021

Films and Interfaces

Transition to stress focusing for locally curved sheets

Thomas Barois, Ilyes Jalisse, Loïc Tadrist, and Emmanuel Virot

Phys. Rev. E 104, 014801 (2021) - Published 9 July, 2021

Friction on incommensurate substrates: Role of anharmonicity and defects

S. Amiri, C. A. Volkert, and R. L. C. Vink

Phys. Rev. E 104, 014802 (2021) - Published 30 July, 2021

Granular Materials

Mechanical response of packings of nonspherical particles: A case study of two-dimensional packings of circulo-lines

Jerry Zhang, Kyle VanderWerf, Chengling Li, Shiyun Zhang, Mark D. Shattuck, and Corey S. O'Hern

Phys. Rev. E 104, 014901 (2021) - Published 27 July, 2021

Solid Mechanics

Wound opening in a thin incompressible viscoelastic tissue

G. M. Carvalho, N. A. M. Araújo, and P. Patrício

Phys. Rev. E 104, 015001 (2021) - Published 8 July, 2021

Unified view of avalanche criticality in sheared glasses

Norihiro Oyama, Hideyuki Mizuno, and Atsushi Ikeda

Phys. Rev. E 104, 015002 (2021) - Published 12 July, 2021

Fluid Dynamics

Evidence for enhancement of anisotropy persistence in kinematic magnetohydrodynamic turbulent systems with finite-time correlations

E. Jurčišinová, M. Jurčišin, M. Menkyna, and R. Remecký

Phys. Rev. E 104, 015101 (2021) - Published 1 July, 2021

Nanoparticle dispersion in porous media: Effects of array geometry and flow orientation

Deepak Mangal, Jeremy C. Palmer, and Jacinta C. Conrad

Phys. Rev. E 104, 015102 (2021) - Published 6 July, 2021

Microscopic understanding of the Johari-Goldstein $β$ relaxation gained from nuclear $γ$ -resonance time-domain-interferometry experiments

K. L. Ngai

Phys. Rev. E 104, 015103 (2021) - Published 6 July, 2021

Reexamining the framework for intermittency in Lagrangian stochastic models for turbulent flows: A way to an original and versatile numerical approach

Roxane Letournel, Ludovic Goudenège, Rémi Zamansky, Aymeric Vié, and Marc Massot

Phys. Rev. E 104, 015104 (2021) - Published 7 July, 2021

Improved modeling of the solid-to-plasma transition of polystyrene ablator for laser direct-drive inertial confinement fusion hydrocodes

A. Pineau, B. Chimier, S. X. Hu, and G. Duchateau

Phys. Rev. E 104, 015210 (2021) - Published 16 July, 2021

Calculation of third to eighth virial coefficients of hard lenses and hard, oblate ellipsoids of revolution employing an efficient algorithm

Philipp Marienhagen, Robert Hellmann, and Joachim Wagner

Phys. Rev. E 104, 015308 (2021) - Published 19 July, 2021

Modeling rarefied gas-solid surface interactions for Couette flow with different wall temperatures using an unsupervised machine learning technique

Shahin Mohammad Nejad, Eldhose Iype, Silvia Nedea, Arjan Frijns, and David Smeulders

Phys. Rev. E 104, 015309 (2021) - Published 21 July, 2021

Lattice Boltzmann simulation of three-phase flows with moving contact lines on curved surfaces

Sheng Li, Yang Lu, Fei Jiang, and Haihu Liu

Phys. Rev. E 104, 015310 (2021) - Published 23 July, 2021

Inferring hidden symmetries of exotic magnets from detecting explicit order parameters

Nihal Rao, Ke Liu (刘科子竞), and Lode Pollet

Phys. Rev. E 104, 015311 (2021) - Published 23 July, 2021

Multiple-relaxation-time lattice Boltzmann model-based four-level finite-difference scheme for one-dimensional diffusion equations

Yuxin Lin, Ning Hong, Baochang Shi, and Zhenhua Chai

Phys. Rev. E 104, 015312 (2021) - Published 26 July, 2021

Onsager-regularized lattice Boltzmann method: A nonequilibrium thermodynamics-based regularized lattice Boltzmann method

Anirudh Jonnalagadda, Atul Sharma, and Amit Agrawal

Phys. Rev. E 104, 015313 (2021) - Published 26 July, 2021

Lattice Boltzmann method for adsorption under stationary and transient conditions: Interplay between transport and adsorption kinetics in porous media

Zaineb Zaafouri, Guillaume Batôt, Carlos Nieto-Draghi, Benjamin Rotenberg, Daniela Bauer, and Benoit Coasne

Phys. Rev. E 104, 015314 (2021) - Published 28 July, 2021

General isotropic micropolar fluid model in smoothed particle hydrodynamics

A. Souto-Iglesias, J. Bonet Avalos, M. Antuono, and A. Colagrossi

Phys. Rev. E 104, 015315 (2021) - Published 29 July, 2021

Descriptor-based method combined with partition to reconstruct three-dimensional complex microstructures

Yilin Li, Shujian Chen, Wenhui Duan, and Wenyi Yan

Phys. Rev. E 104, 015316 (2021) - Published 30 July, 2021

COMMENTS

Comment on “Homoclinic chaos in strongly dissipative strongly coupled complex dusty plasmas”

Asit Saha and Santo Banerjee

Phys. Rev. E 104, 017201 (2021) - Published 2 July, 2021

ERRATA

Erratum: Homoclinic chaos in strongly dissipative strongly coupled complex dusty plasmas [Phys. Rev. E 103, 023205 (2021)]

Samiran Ghosh

Phys. Rev. E 104, 019901 (2021) - Published 2 July, 2021

Erratum: Three-body interactions improve contact prediction within direct-coupling analysis [Phys. Rev. E 96, 052405 (2017)]

Michael Schmidt and Kay Hamacher

Phys. Rev. E 104, 019902 (2021) - Published 13 July, 2021