Volume 100, Issue 3

September 2019

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Parsimonious evolutionary scenario for the origin of allostery and coevolution patterns in proteins

Olivier Rivoire

Phys. Rev. E 100, 032411 (2019) - Published 23 September, 2019

This paper examines a scenario in which the requirement for specificity of ligand binding promotes other common features of proteins, such as sensitivity to long-range effects and adaptation to new pressures. Numerical results from various simple protein models support the proposed evolutionary scenario, independent of interaction details. Experimental tests are suggested.

EDITORS' SUGGESTION

Emergence of an optimal temperature in action-potential propagation through myelinated axons

Xinlin Song, Hengtong Wang, Yong Chen, and Ying-Cheng Lai

Phys. Rev. E 100, 032416 (2019) - Published 30 September, 2019

The propagation of an action potential in model neurons is used to study the existence of an optimal temperature for biological function. The authors show that the average propagation time is largely dependent on the resistance of the neuronal membrane, which is subject to two competing effects as temperature changes. From this interplay, an optimal temperature emerges which is in good agreement with previously measured experimental values.

EDITORS' SUGGESTION

Thermodynamic equilibrium of binary mixtures on curved surfaces

Piermarco Fonda, Melissa Rinaldin, Daniela J. Kraft, and Luca Giomi

Phys. Rev. E 100, 032604 (2019) - Published 6 September, 2019

The phase behavior of a two-dimensional fluid mixture on a closed surface is influenced by the curvature of the surface. In this work, the authors show that such systems, for example multicomponent lipid vesicles, can exhibit unexpected properties.

EDITORS' SUGGESTION

Dynamics of a grain-scale intruder in a two-dimensional granular medium with and without basal friction

Ryan Kozlowski, C. Manuel Carlevaro, Karen E. Daniels, Lou Kondic, Luis A. Pugnaloni, Joshua E. S. Socolar, Hu Zheng, and Robert P. Behringer

Phys. Rev. E 100, 032905 (2019) - Published 25 September, 2019

Experiments on the dynamics of a single grain pushed through a two-dimensional granular material show two distinct flow regimes: an intermittent one where the intruder grain only occasionally gets jammed, and one that exhibits stick-slip dynamics. The authors explore the occurrence of these two regimes as a function of several variables, and find that friction with the base plays a major role.

EDITORS' SUGGESTION

Laser speckle imaging of flowing blood: A numerical study

Kevin van As, Jorne Boterman, Chris R. Kleijn, Sasa Kenjeres, and Nandini Bhattacharya

Phys. Rev. E 100, 033317 (2019) - Published 26 September, 2019

Laser speckle imaging can be used to study dynamic processes in turbid media, such as blood flow embedded in tissue, but it is difficult to obtain quantitative information from this technique. This paper presents a computational model for simulating the imaging process, which will be useful to further develop it as a quantitative tool for biomedical and other applications.

RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Approach to the inverse problem of superdiffusion on finite systems based on time-dependent long-range navigation

Alfonso Allen-Perkins, Alfredo Blanco Serrano, Thiago Albuquerque de Assis, and Roberto F. S. Andrade

Phys. Rev. E 100, 030101(R) (2019) - Published 3 September, 2019

RAPID COMMUNICATION

Glassy properties of the Bose-glass phase of a one-dimensional disordered Bose fluid

Nicolas Dupuis

Phys. Rev. E 100, 030102(R) (2019) - Published 30 September, 2019

Nonlinear Dynamics and Chaos

RAPID COMMUNICATION

Complex dynamics of interacting fronts in a simple $A + B \to C$ reaction-diffusion system

R. Tiani and L. Rongy

Phys. Rev. E 100, 030201(R) (2019) - Published 5 September, 2019

Biological Physics

RAPID COMMUNICATION

Key role of recombination in evolutionary processes with migration between two habitats

David B. Saakian, Eugene V. Koonin, and Kang Hao Cheong

Phys. Rev. E 100, 030401(R) (2019) - Published 20 September, 2019

Fluid Dynamics

RAPID COMMUNICATION

Aerodynamically stabilized Taylor cone jets

F. Cruz-Mazo, M. O. Wiedorn, M. A. Herrada, S. Bajt, H. N. Chapman, and A. M. Gañán-Calvo

Phys. Rev. E 100, 031101(R) (2019) - Published 3 September, 2019

RAPID COMMUNICATION

Origin of localized snakes-and-ladders solutions of plane Couette flow

Matthew Salewski, John F. Gibson, and Tobias M. Schneider

Phys. Rev. E 100, 031102(R) (2019) - Published 12 September, 2019

RAPID COMMUNICATION

Origin of lobe and cleft at the gravity current front

C. Y. Xie, J. J. Tao, and L. S. Zhang

Phys. Rev. E 100, 031103(R) (2019) - Published 18 September, 2019

RAPID COMMUNICATION

Spatial analog of the two-frequency torus breakup in a nonlinear system of reactive miscible fluids

Dmitry Bratsun

Phys. Rev. E 100, 031104(R) (2019) - Published 18 September, 2019

ARTICLES

Statistical Physics

Nonlinear dissipation and nonequilibrium gas flows

Di Wu, Donghuan Wang, and Hong Xiao

Phys. Rev. E 100, 032101 (2019) - Published 3 September, 2019

Fluctuations in the random-link matching problem

Enrico M. Malatesta, Giorgio Parisi, and Gabriele Sicuro

Phys. Rev. E 100, 032102 (2019) - Published 3 September, 2019

Paths towards equilibrium in molecular systems: The case of water

A. Gijón, A. Lasanta, and E. R. Hernández

Phys. Rev. E 100, 032103 (2019) - Published 3 September, 2019

Imitating nonequilibrium steady states using time-varying equilibrium force in many-body diffusive systems

Ohad Shpielberg and Takahiro Nemoto

Phys. Rev. E 100, 032104 (2019) - Published 3 September, 2019

Percolation phase transition by removal of $k^{2}$ -mers from fully occupied lattices

L. S. Ramirez, P. M. Centres, and A. J. Ramirez-Pastor

Phys. Rev. E 100, 032105 (2019) - Published 4 September, 2019

Aperiodic space-inhomogeneous quantum walks: Localization properties, energy spectra, and enhancement of entanglement

A. R. C. Buarque and W. S. Dias

Phys. Rev. E 100, 032106 (2019) - Published 4 September, 2019

Stable adiabatic quantum batteries

Alan C. Santos, Barış Çakmak, Steve Campbell, and Nikolaj T. Zinner

Phys. Rev. E 100, 032107 (2019) - Published 4 September, 2019

Logical response induced by temperature asymmetry

Moupriya Das and Holger Kantz

Phys. Rev. E 100, 032108 (2019) - Published 5 September, 2019

Asymmetric heat transport in ion crystals

M. A. Simón, S. Martínez-Garaot, M. Pons, and J. G. Muga

Phys. Rev. E 100, 032109 (2019) - Published 5 September, 2019

Robust random search with scale-free stochastic resetting

Łukasz Kuśmierz and Taro Toyoizumi

Phys. Rev. E 100, 032110 (2019) - Published 5 September, 2019

Stochastic entropies and fluctuation theorems for a discrete one-dimensional Kardar-Parisi-Zhang system

Miguel A. Rodríguez and Horacio S. Wio

Phys. Rev. E 100, 032111 (2019) - Published 6 September, 2019

Thermodynamic behavior of binary mixtures of hard spheres: Semianalytical solutions on a Husimi lattice built with cubes

Nathann T. Rodrigues and Tiago J. Oliveira

Phys. Rev. E 100, 032112 (2019) - Published 9 September, 2019

Critical disorder and critical magnetic field of the nonequilibrium athermal random-field Ising model in thin systems

Svetislav Mijatović, Dragutin Jovković, Sanja Janićević, and Djordje Spasojević

Phys. Rev. E 100, 032113 (2019) - Published 9 September, 2019

Quench action and large deviations: Work statistics in the one-dimensional Bose gas

Gabriele Perfetto, Lorenzo Piroli, and Andrea Gambassi

Phys. Rev. E 100, 032114 (2019) - Published 10 September, 2019

Dissipative Bose-Josephson junction coupled to bosonic baths

Sudip Sinha and S. Sinha

Phys. Rev. E 100, 032115 (2019) - Published 10 September, 2019

Critical density of the Abelian Manna model via a multitype branching process

Nanxin Wei and Gunnar Pruessner

Phys. Rev. E 100, 032116 (2019) - Published 11 September, 2019

Multifractal dimensions for random matrices, chaotic quantum maps, and many-body systems

Arnd Bäcker, Masudul Haque, and Ivan M. Khaymovich

Phys. Rev. E 100, 032117 (2019) - Published 11 September, 2019

Heat flux direction controlled by power-law oscillators under non-Gaussian fluctuations

E. H. Colombo, L. A. C. A. Defaveri, and C. Anteneodo

Phys. Rev. E 100, 032118 (2019) - Published 12 September, 2019

Universality of the local persistence exponent for models in the directed Ising class in one dimension

Nitesh D. Shambharkar and Prashant M. Gade

Phys. Rev. E 100, 032119 (2019) - Published 12 September, 2019

Approximations for reflected fractional Brownian motion

Artagan Malsagov and Michel Mandjes

Phys. Rev. E 100, 032120 (2019) - Published 13 September, 2019

Sequential disruption of the shortest path in critical percolation

Oliver Gschwend and Hans J. Herrmann

Phys. Rev. E 100, 032121 (2019) - Published 16 September, 2019

Jamming and tiling in fragmentation of rectangles

E. Ben-Naim and P. L. Krapivsky

Phys. Rev. E 100, 032122 (2019) - Published 16 September, 2019

Generalized Ornstein-Uhlenbeck model for active motion

Francisco J. Sevilla, Rosalío F. Rodríguez, and Juan Ruben Gomez-Solano

Phys. Rev. E 100, 032123 (2019) - Published 16 September, 2019

Relaxation of dynamically prepared out-of-equilibrium initial states within and beyond linear response theory

Jonas Richter, Mats H. Lamann, Christian Bartsch, Robin Steinigeweg, and Jochen Gemmer

Phys. Rev. E 100, 032124 (2019) - Published 16 September, 2019

Analysis of aligning active local searchers orbiting around their common home position

J. Noetel and L. Schimansky-Geier

Phys. Rev. E 100, 032125 (2019) - Published 17 September, 2019

Statistical thermodynamics of the Fröhlich-Bose-Einstein condensation of magnons out of equilibrium

Fabio Stucchi Vannucchi and Roberto Luzzi

Phys. Rev. E 100, 032126 (2019) - Published 18 September, 2019

Realizable solutions of the Thouless-Anderson-Palmer equations

T. Aspelmeier and M. A. Moore

Phys. Rev. E 100, 032127 (2019) - Published 18 September, 2019

Selection of sequence motifs and generative Hopfield-Potts models for protein families

Kai Shimagaki and Martin Weigt

Phys. Rev. E 100, 032128 (2019) - Published 19 September, 2019

Power and efficiency of a thermal engine with a coherent bath

Thomas Guff, Shakib Daryanoosh, Ben Q. Baragiola, and Alexei Gilchrist

Phys. Rev. E 100, 032129 (2019) - Published 20 September, 2019

Uncertainty relations for underdamped Langevin dynamics

Tan Van Vu and Yoshihiko Hasegawa

Phys. Rev. E 100, 032130 (2019) - Published 20 September, 2019

Critical exponents in mean-field classical spin systems

Yoshiyuki Y. Yamaguchi, Debraj Das, and Shamik Gupta

Phys. Rev. E 100, 032131 (2019) - Published 20 September, 2019

Family of closed-form solutions for two-dimensional correlated diffusion processes

Haozhe Shan, Rubén Moreno-Bote, and Jan Drugowitsch

Phys. Rev. E 100, 032132 (2019) - Published 20 September, 2019

Theoretical analysis and simulation of phase separation in a driven bidirectional two-lane system

Qing-Yi Hao, Rui Jiang, Mao-Bin Hu, Yunxin Zhang, Chao-Yun Wu, and Ning Guo

Phys. Rev. E 100, 032133 (2019) - Published 20 September, 2019

Nonconvex image reconstruction via expectation propagation

Anna Paola Muntoni, Rafael Díaz Hernández Rojas, Alfredo Braunstein, Andrea Pagnani, and Isaac Pérez Castillo

Phys. Rev. E 100, 032134 (2019) - Published 23 September, 2019

Replica symmetry and replica symmetry breaking for the traveling salesperson problem

Hendrik Schawe, Jitesh Kumar Jha, and Alexander K. Hartmann

Phys. Rev. E 100, 032135 (2019) - Published 23 September, 2019

Symmetric exclusion process under stochastic resetting

Urna Basu, Anupam Kundu, and Arnab Pal

Phys. Rev. E 100, 032136 (2019) - Published 23 September, 2019

Kinetically constrained model for gravity-driven granular flow and clogging

Gregory Bolshak, Rakesh Chatterjee, Rotem Lieberman, and Yair Shokef

Phys. Rev. E 100, 032137 (2019) - Published 24 September, 2019

Elastic properties of dense hard-sphere fluids

Sergey Khrapak

Phys. Rev. E 100, 032138 (2019) - Published 25 September, 2019

Heat flux in one-dimensional systems

Carlos Mejía-Monasterio, Antonio Politi, and Lamberto Rondoni

Phys. Rev. E 100, 032139 (2019) - Published 25 September, 2019

Mean-field stability map of hard-sphere glasses

Ada Altieri and Francesco Zamponi

Phys. Rev. E 100, 032140 (2019) - Published 26 September, 2019

Three-dimensional Baxter-Wu model

L. N. Jorge, L. S. Ferreira, and A. A. Caparica

Phys. Rev. E 100, 032141 (2019) - Published 27 September, 2019

Emergent self-similarity and scaling properties of fractal intra-urban heat islets for diverse global cities

Anamika Shreevastava, P. Suresh C. Rao, and Gavan S. McGrath

Phys. Rev. E 100, 032142 (2019) - Published 27 September, 2019

Simple scheme for extracting work with a single bath

Nicolò Piccione, Benedetto Militello, Anna Napoli, and Bruno Bellomo

Phys. Rev. E 100, 032143 (2019) - Published 27 September, 2019

Boosting the performance of quantum Otto heat engines

Jin-Fu Chen, Chang-Pu Sun, and Hui Dong

Phys. Rev. E 100, 032144 (2019) - Published 30 September, 2019

Nonlinear Dynamics and Chaos

Tunable bimodal explorations of space from memory-driven deterministic dynamics

Maxime Hubert, Stéphane Perrard, Matthieu Labousse, Nicolas Vandewalle, and Yves Couder

Phys. Rev. E 100, 032201 (2019) - Published 3 September, 2019

Self-excited oscillation and synchronization of an on-fiber optomechanical cavity

Eyal Buks and Ivar Martin

Phys. Rev. E 100, 032202 (2019) - Published 3 September, 2019

Explosive death in nonlinear oscillators coupled by quorum sensing

Umesh Kumar Verma, Sudhanshu Shekhar Chaurasia, and Sudeshna Sinha

Phys. Rev. E 100, 032203 (2019) - Published 3 September, 2019

Transparent nonlinear networks

J. R. Yusupov, K. K. Sabirov, M. Ehrhardt, and D. U. Matrasulov

Phys. Rev. E 100, 032204 (2019) - Published 3 September, 2019

Spatial chaos as a governing factor for imperfection sensitivity in shell buckling

Rainer M. J. Groh and Alberto Pirrera

Phys. Rev. E 100, 032205 (2019) - Published 6 September, 2019

Resonance induced by coupling diversity in globally coupled bistable oscillators

Cong Liu and Xiaoming Liang

Phys. Rev. E 100, 032206 (2019) - Published 9 September, 2019

Quantum mechanics and data assimilation

Dimitrios Giannakis

Phys. Rev. E 100, 032207 (2019) - Published 9 September, 2019

Narrow autoresonant magnetization structures in finite-length ferromagnetic nanoparticles

A. G. Shagalov and L. Friedland

Phys. Rev. E 100, 032208 (2019) - Published 10 September, 2019

Solitary waves in a nonintegrable chain with double-well potentials

Shmuel Katz and Sefi Givli

Phys. Rev. E 100, 032209 (2019) - Published 12 September, 2019

Microscopic correlations in the finite-size Kuramoto model of coupled oscillators

Franziska Peter, Chen Chris Gong, and Arkady Pikovsky

Phys. Rev. E 100, 032210 (2019) - Published 13 September, 2019

Local and global chimera states in a four-oscillator system

D. V. Senthilkumar and V. K. Chandrasekar

Phys. Rev. E 100, 032211 (2019) - Published 18 September, 2019

Early stage of integrable turbulence in the one-dimensional nonlinear Schrödinger equation: A semiclassical approach to statistics

Giacomo Roberti, Gennady El, Stéphane Randoux, and Pierre Suret

Phys. Rev. E 100, 032212 (2019) - Published 19 September, 2019

Internally resonant wave energy exchange in weakly nonlinear lattices and metamaterials

Matthew D. Fronk and Michael J. Leamy

Phys. Rev. E 100, 032213 (2019) - Published 20 September, 2019

Synchronization of viscoelastically coupled excitable oscillators

Florian Spreckelsen, Stefan Luther, and Ulrich Parlitz

Phys. Rev. E 100, 032214 (2019) - Published 23 September, 2019

Master-slave synchronization of hyperchaotic systems through a linear dynamic coupling

Arturo Buscarino, Luigi Fortuna, and Luca Patanè

Phys. Rev. E 100, 032215 (2019) - Published 23 September, 2019

Embedded solitons in the double sine-Gordon lattice with next-neighbor interactions

Yaroslav Zolotaryuk and Ivan O. Starodub

Phys. Rev. E 100, 032216 (2019) - Published 24 September, 2019

Dynamical glass in weakly nonintegrable Klein-Gordon chains

Carlo Danieli, Thudiyangal Mithun, Yagmur Kati, David K. Campbell, and Sergej Flach

Phys. Rev. E 100, 032217 (2019) - Published 25 September, 2019

Model framework for emergence of synchronized oscillations

Kei-Ichi Ueda

Phys. Rev. E 100, 032218 (2019) - Published 25 September, 2019

Localized structures in dispersive and doubly resonant optical parametric oscillators

P. Parra-Rivas, L. Gelens, and F. Leo

Phys. Rev. E 100, 032219 (2019) - Published 25 September, 2019

Modulational instability of Bose-Einstein condensates with helicoidal spin-orbit coupling

Xiao-Xun Li, Rui-Jin Cheng, Ai-Xia Zhang, and Ju-Kui Xue

Phys. Rev. E 100, 032220 (2019) - Published 26 September, 2019

Symbolic diffusion entropy rate of chaotic time series as a surrogate measure for the largest Lyapunov exponent

Kota Shiozawa and Takaya Miyano

Phys. Rev. E 100, 032221 (2019) - Published 26 September, 2019

Dissipative solitons for generalizations of the cubic complex Ginzburg-Landau equation

M. I. Carvalho and M. Facão

Phys. Rev. E 100, 032222 (2019) - Published 26 September, 2019

Multifractality of open quantum systems

Agustín M. Bilen, Ignacio García-Mata, Bertrand Georgeot, and Olivier Giraud

Phys. Rev. E 100, 032223 (2019) - Published 27 September, 2019

Delayed dynamics in an electronic relaxation oscillator

Angelo Di Garbo, Stefano Euzzor, Jean-Marc Ginoux, F. Tito Arecchi, and Riccardo Meucci

Phys. Rev. E 100, 032224 (2019) - Published 27 September, 2019

Networks and Complex Systems

Statistical analyses of cyclic and starlike hierarchical dominances in directed graphs

György Szabó, István Borsos, and Borbála Leitner

Phys. Rev. E 100, 032301 (2019) - Published 3 September, 2019

Random temporal connections promote network synchronization

Shijie Zhou, Yao Guo, Maoxing Liu, Ying-Cheng Lai, and Wei Lin

Phys. Rev. E 100, 032302 (2019) - Published 4 September, 2019

Global robustness versus local vulnerabilities in complex synchronous networks

Melvyn Tyloo and Philippe Jacquod

Phys. Rev. E 100, 032303 (2019) - Published 5 September, 2019

Effect of voluntary participation on an alternating and a simultaneous prisoner's dilemma

H. Yamamoto, I. Okada, T. Taguchi, and M. Muto

Phys. Rev. E 100, 032304 (2019) - Published 11 September, 2019

Quantifying high-order interdependencies via multivariate extensions of the mutual information

Fernando E. Rosas, Pedro A. M. Mediano, Michael Gastpar, and Henrik J. Jensen

Phys. Rev. E 100, 032305 (2019) - Published 13 September, 2019

Modeling the origin of urban-output scaling laws

V. Chuqiao Yang, Andrew V. Papachristos, and Daniel M. Abrams

Phys. Rev. E 100, 032306 (2019) - Published 16 September, 2019

May's instability in large economies

José Moran and Jean-Philippe Bouchaud

Phys. Rev. E 100, 032307 (2019) - Published 18 September, 2019

Scale-variant topological information for characterizing the structure of complex networks

Quoc Hoan Tran, Van Tuan Vo, and Yoshihiko Hasegawa

Phys. Rev. E 100, 032308 (2019) - Published 18 September, 2019

Optimizing biologically inspired transport networks by control

Junjie Jiang, Xingang Wang, and Ying-Cheng Lai

Phys. Rev. E 100, 032309 (2019) - Published 20 September, 2019

Nontrivial resource requirement in the early stage for containment of epidemics

Xiaolong Chen, Tianshou Zhou, Ling Feng, Junhao Liang, Fredrik Liljeros, Shlomo Havlin, and Yanqing Hu

Phys. Rev. E 100, 032310 (2019) - Published 23 September, 2019

Mean first passage times reconstruct the slowest relaxations in potential energy landscapes of nanoclusters

Teruaki Okushima, Tomoaki Niiyama, Kensuke S. Ikeda, and Yasushi Shimizu

Phys. Rev. E 100, 032311 (2019) - Published 23 September, 2019

Three-state opinion dynamics in modular networks

André L. Oestereich, Marcelo A. Pires, and Nuno Crokidakis

Phys. Rev. E 100, 032312 (2019) - Published 24 September, 2019

Epidemic spreading with awareness and different timescales in multiplex networks

Paulo Cesar Ventura da Silva, Fátima Velásquez-Rojas, Colm Connaughton, Federico Vazquez, Yamir Moreno, and Francisco A. Rodrigues

Phys. Rev. E 100, 032313 (2019) - Published 24 September, 2019

Convergence towards an Erdős-Rényi graph structure in network contraction processes

Ido Tishby, Ofer Biham, and Eytan Katzav

Phys. Rev. E 100, 032314 (2019) - Published 27 September, 2019

Shape of shortest paths in random spatial networks

Alexander P. Kartun-Giles, Marc Barthelemy, and Carl P. Dettmann

Phys. Rev. E 100, 032315 (2019) - Published 30 September, 2019

Biological Physics

Polymorphism in rapidly changing cyclic environment

Armen E. Allahverdyan, Sanasar G. Babajanyan, and Chin-Kun Hu

Phys. Rev. E 100, 032401 (2019) - Published 3 September, 2019

Cellular automata as convolutional neural networks

William Gilpin

Phys. Rev. E 100, 032402 (2019) - Published 4 September, 2019

Polarization wave at the onset of collective cell migration

Dietmar Oelz, Hamid Khataee, Andras Czirok, and Zoltan Neufeld

Phys. Rev. E 100, 032403 (2019) - Published 5 September, 2019

Kinetics of interaction between antimicrobial peptide nisin and Langmuir monolayers of DPPC and DPPG molecules

Imranpasha and Bharat Kumar

Phys. Rev. E 100, 032404 (2019) - Published 5 September, 2019

Unified analysis of global and focal aspects of absence epilepsy via neural field theory of the corticothalamic system

Dong-Ping Yang and P. A. Robinson

Phys. Rev. E 100, 032405 (2019) - Published 10 September, 2019

Restricted information in a two-step cascade

Mintu Nandi, Suman K. Banik, and Pinaki Chaudhury

Phys. Rev. E 100, 032406 (2019) - Published 16 September, 2019

Critical contractility and cell size for mechanical cell elimination from epithelial tissue

Sang-Woo Lee and Yoshihiro Morishita

Phys. Rev. E 100, 032407 (2019) - Published 16 September, 2019

Percolation in a reduced equilibrium model of planar cell polarity

Kamleswar Chandrasekaran and Biplab Bose

Phys. Rev. E 100, 032408 (2019) - Published 17 September, 2019

Air spreading through wetted cellulose membranes: Implications for the safety function of hydraulic valves in plants

JooYoung Park, Taesik Go, Jeongeun Ryu, and Sang Joon Lee

Phys. Rev. E 100, 032409 (2019) - Published 19 September, 2019

Classification of diffusion modes in single-particle tracking data: Feature-based versus deep-learning approach

Patrycja Kowalek, Hanna Loch-Olszewska, and Janusz Szwabiński

Phys. Rev. E 100, 032410 (2019) - Published 20 September, 2019

EDITORS' SUGGESTION

Parsimonious evolutionary scenario for the origin of allostery and coevolution patterns in proteins

Olivier Rivoire

Phys. Rev. E 100, 032411 (2019) - Published 23 September, 2019

Connecting gene expression to cellular movement: A transport model for cell migration

Alexis Grau Ribes, Yannick De Decker, and Laurence Rongy

Phys. Rev. E 100, 032412 (2019) - Published 24 September, 2019

Anisotropic line tension of domains in lipid monolayers

E. Velasco and L. Mederos

Phys. Rev. E 100, 032413 (2019) - Published 27 September, 2019

Topological phase transitions in functional brain networks

Fernando A. N. Santos, Ernesto P. Raposo, Maurício D. Coutinho-Filho, Mauro Copelli, Cornelis J. Stam, and Linda Douw

Phys. Rev. E 100, 032414 (2019) - Published 30 September, 2019

Ab initio scaling laws between noise and mean of gene expression

Guillermo Rodrigo

Phys. Rev. E 100, 032415 (2019) - Published 30 September, 2019

EDITORS' SUGGESTION

Emergence of an optimal temperature in action-potential propagation through myelinated axons

Xinlin Song, Hengtong Wang, Yong Chen, and Ying-Cheng Lai

Phys. Rev. E 100, 032416 (2019) - Published 30 September, 2019

Leader cells in collective chemotaxis: Optimality and trade-offs

Austin Hopkins and Brian A. Camley

Phys. Rev. E 100, 032417 (2019) - Published 30 September, 2019

Polymers

Hard-wall entropic effect accelerates detachment of adsorbed polymer chains

Cheng-Tai Lee and Eugene M. Terentjev

Phys. Rev. E 100, 032501 (2019) - Published 3 September, 2019

Orientationally ordered states of a wormlike chain in spherical confinement

Qin Liang, Ying Jiang, and Jeff Z. Y. Chen

Phys. Rev. E 100, 032502 (2019) - Published 30 September, 2019

Colloids, Complex Fluids, and Active Matter

Boundary homogenization for trapping patchy particles

Sean D. Lawley

Phys. Rev. E 100, 032601 (2019) - Published 3 September, 2019

Accounting for effective interactions among charged microgels

L. A. Aguirre-Manzo, M. Ledesma-Motolinía, L. F. Rojas-Ochoa, V. Trappe, J. Callejas-Fernández, C. Haro-Pérez, and P. González-Mozuelos

Phys. Rev. E 100, 032602 (2019) - Published 3 September, 2019

Lifetime distributions for adjacency relationships in a Vicsek model

Takuma Narizuka and Yoshihiro Yamazaki

Phys. Rev. E 100, 032603 (2019) - Published 3 September, 2019

EDITORS' SUGGESTION

Thermodynamic equilibrium of binary mixtures on curved surfaces

Piermarco Fonda, Melissa Rinaldin, Daniela J. Kraft, and Luca Giomi

Phys. Rev. E 100, 032604 (2019) - Published 6 September, 2019

Dynamic susceptibility of a concentrated ferrofluid: The role of interparticle interactions

Alexander V. Lebedev, Victor I. Stepanov, Andrey A. Kuznetsov, Alexey O. Ivanov, and Alexander F. Pshenichnikov

Phys. Rev. E 100, 032605 (2019) - Published 9 September, 2019

Hydrodynamic separation of colloidal particles in tubes: Effective one-dimensional approach

František Slanina and Pavol Kalinay

Phys. Rev. E 100, 032606 (2019) - Published 9 September, 2019

Hydrodynamic synchronization and collective dynamics of colloidal particles driven along a circular path

Takumi Miyamoto, Masayuki Imai, and Nariya Uchida

Phys. Rev. E 100, 032607 (2019) - Published 11 September, 2019

Topological order in densely packed anisotropic colloids

William Zygmunt, Erin G. Teich, Greg van Anders, and Sharon C. Glotzer

Phys. Rev. E 100, 032608 (2019) - Published 25 September, 2019

Universal aspects of collective behavior in chemotactic systems

Lisa Rapp and Walter Zimmermann

Phys. Rev. E 100, 032609 (2019) - Published 27 September, 2019

Frequency-dependent higher-order Stokes singularities near a planar elastic boundary: Implications for the hydrodynamics of an active microswimmer near an elastic interface

Abdallah Daddi-Moussa-Ider, Christina Kurzthaler, Christian Hoell, Andreas Zöttl, Mehdi Mirzakhanloo, Mohammad-Reza Alam, Andreas M. Menzel, Hartmut Löwen, and Stephan Gekle

Phys. Rev. E 100, 032610 (2019) - Published 30 September, 2019

Liquid Crystals

Observation of cavity polaritons in a metal-mirror Fabry-Pérot microcavity containing liquid-crystalline semiconductor based on perylene bisimide units

Nobutaka Kani, Makoto Suzuki, Kouichi Nishiyama, Shunsuke Nakanishi, Masahiro Funahashi, and Noriaki Tsurumachi

Phys. Rev. E 100, 032701 (2019) - Published 3 September, 2019

Influence of boundary conditions on the order and defects of biaxial nematic droplets

C. Chiccoli, L. R. Evangelista, P. Pasini, G. Skačej, R. Teixeira de Souza, and C. Zannoni

Phys. Rev. E 100, 032702 (2019) - Published 3 September, 2019

Kinklike pressure wave in the microsized twisted nematic volume

A. V. Zakharov and P. V. Maslennikov

Phys. Rev. E 100, 032703 (2019) - Published 17 September, 2019

Orientational ordering and layering of hard plates in narrow slitlike pores

Sakine Mizani, Roohollah Aliabadi, Hamdollah Salehi, and Szabolcs Varga

Phys. Rev. E 100, 032704 (2019) - Published 19 September, 2019

Films and Interfaces

Scaling of wetting and prewetting transitions on nanopatterned walls

Martin Pospíšil, Martin Láska, Andrew O. Parry, and Alexandr Malijevský

Phys. Rev. E 100, 032801 (2019) - Published 3 September, 2019

Dissolution-precipitation-driven upward migration of a salt crust

G. Licsandru, C. Noiriel, P. Duru, S. Geoffroy, A. Abou Chakra, and M. Prat

Phys. Rev. E 100, 032802 (2019) - Published 5 September, 2019

Nonlinear denoising for characterization of solid friction under low confinement pressure

Jules Colas, Nelly Pustelnik, Cristobal Oliver, Patrice Abry, Jean-Christophe Géminard, and Valérie Vidal

Phys. Rev. E 100, 032803 (2019) - Published 17 September, 2019

Effect of thin-film length on the peeling behavior of film-substrate interfaces

Zhilong Peng, Hanbin Yin, Yin Yao, and Shaohua Chen

Phys. Rev. E 100, 032804 (2019) - Published 18 September, 2019

Role of Gaussian curvature on local equilibrium and dynamics of smectic-isotropic interfaces

Eduardo Vitral, Perry H. Leo, and Jorge Viñals

Phys. Rev. E 100, 032805 (2019) - Published 25 September, 2019

Granular Materials

Nonergodicity in silo unclogging: Broken and unbroken arches

B. V. Guerrero, B. Chakraborty, I. Zuriguel, and A. Garcimartín

Phys. Rev. E 100, 032901 (2019) - Published 4 September, 2019

Hyperuniform states generated by a critical friction field

Gustavo Castillo, Nicolás Mujica, Néstor Sepúlveda, Juan Carlos Sobarzo, Marcelo Guzmán, and Rodrigo Soto

Phys. Rev. E 100, 032902 (2019) - Published 6 September, 2019

Shear-banding instability in arbitrarily inelastic granular shear flows

Priyanka Shukla, Lima Biswas, and Vinay Kumar Gupta

Phys. Rev. E 100, 032903 (2019) - Published 10 September, 2019

Influence of the first-order contributions to the partial temperatures on transport properties in polydisperse dense granular mixtures

Rubén Gómez González and Vicente Garzó

Phys. Rev. E 100, 032904 (2019) - Published 19 September, 2019

EDITORS' SUGGESTION

Dynamics of a grain-scale intruder in a two-dimensional granular medium with and without basal friction

Ryan Kozlowski, C. Manuel Carlevaro, Karen E. Daniels, Lou Kondic, Luis A. Pugnaloni, Joshua E. S. Socolar, Hu Zheng, and Robert P. Behringer

Phys. Rev. E 100, 032905 (2019) - Published 25 September, 2019

Shear-driven flow of athermal, frictionless, spherocylinder suspensions in two dimensions: Stress, jamming, and contacts

Theodore A. Marschall and S. Teitel

Phys. Rev. E 100, 032906 (2019) - Published 30 September, 2019

Solid Mechanics

Shear transformation zone analysis of anelastic relaxation of a metallic glass reveals distinct properties of α and β relaxations

T. J. Lei, L. Rangel DaCosta, M. Liu, W. H. Wang, Y. H. Sun, A. L. Greer, and M. Atzmon

Phys. Rev. E 100, 033001 (2019) - Published 3 September, 2019

Exploring the link between crystal defects and nonaffine displacement fluctuations

Pankaj Popli, Sayantani Kayal, Peter Sollich, and Surajit Sengupta

Phys. Rev. E 100, 033002 (2019) - Published 11 September, 2019

Foldable cones as a framework for nonrigid origami

I. Andrade-Silva, M. Adda-Bedia, and M. A. Dias

Phys. Rev. E 100, 033003 (2019) - Published 23 September, 2019

Fluid Dynamics

Confinement effect on electrically induced dynamics of a droplet in shear flow

Somnath Santra, Shubhadeep Mandal, and Suman Chakraborty

Phys. Rev. E 100, 033101 (2019) - Published 3 September, 2019

Modes and break periods of electrowetting liquid bridge

Mohsen Torabi, Ahmed A. Hemeda, James W. Palko, Yu Feng, Yong Cao, and Yanbao Ma

Phys. Rev. E 100, 033102 (2019) - Published 11 September, 2019

Interfacial flows in sessile evaporating droplets of mineral water

Massimiliano Rossi, Alvaro Marin, and Christian J. Kähler

Phys. Rev. E 100, 033103 (2019) - Published 6 September, 2019

Acoustic microstreaming produced by nonspherical oscillations of a gas bubble. I. Case of modes 0 and $m$

Alexander A. Doinikov, Sarah Cleve, Gabriel Regnault, Cyril Mauger, and Claude Inserra

Phys. Rev. E 100, 033104 (2019) - Published 10 September, 2019

Acoustic microstreaming produced by nonspherical oscillations of a gas bubble. II. Case of modes 1 and $m$

Alexander A. Doinikov, Sarah Cleve, Gabriel Regnault, Cyril Mauger, and Claude Inserra

Phys. Rev. E 100, 033105 (2019) - Published 10 September, 2019

Dynamics of groups of magnetically driven artificial microswimmers

Jake Buzhardt and Phanindra Tallapragada

Phys. Rev. E 100, 033106 (2019) - Published 10 September, 2019

Analytic solution for the zero-order postshock profiles when an incident planar shock hits a planar contact surface

F. Cobos-Campos and J. G. Wouchuk

Phys. Rev. E 100, 033107 (2019) - Published 11 September, 2019

Reactive-infiltration instability in radial geometry: From dissolution fingers to star patterns

Piotr Grodzki and Piotr Szymczak

Phys. Rev. E 100, 033108 (2019) - Published 13 September, 2019

Solidification of the Lennard-Jones fluid near a wall in thermohydrodynamic lubrication

Kouki Nakamura, Ryo Ookawa, and Shugo Yasuda

Phys. Rev. E 100, 033109 (2019) - Published 16 September, 2019

Closed-loop adaptive control of extreme events in a turbulent flow

Mohammad Farazmand and Themistoklis P. Sapsis

Phys. Rev. E 100, 033110 (2019) - Published 16 September, 2019

Numerical investigation of adhesion dynamics of a deformable cell pair on an adhesive substrate in shear flow

Ziying Zhang, Jun Du, Zhengying Wei, Zhen Chen, Chang Shu, Zhen Wang, and Minghui Li

Phys. Rev. E 100, 033111 (2019) - Published 19 September, 2019

Initial coalescence of a drop at a planar liquid surface

Qindan Zhang, Xiaofeng Jiang, David Brunello, Taotao Fu, Chunying Zhu, Youguang Ma, and Huai Z. Li

Phys. Rev. E 100, 033112 (2019) - Published 20 September, 2019

Migration behaviors of leaky dielectric droplets with electric and hydrodynamic forces

Yanning Wang, Dongliang Sun, Yinshi Li, Shuai Chen, and Bo Yu

Phys. Rev. E 100, 033113 (2019) - Published 20 September, 2019

Self-propelled plate in wakes behind tandem cylinders

Wenjiang Wang, Haibo Huang, and Xi-Yun Lu

Phys. Rev. E 100, 033114 (2019) - Published 20 September, 2019

Determination of the transmissivity of a heterogeneous anisotropic fracture in slip flow conditions

Tony Zaouter, Didier Lasseux, and Marc Prat

Phys. Rev. E 100, 033115 (2019) - Published 23 September, 2019

Nonaxisymmetric simulations of the Princeton magnetorotational instability experiment with insulating and conducting axial boundaries

Dahan Choi, Fatima Ebrahimi, Kyle J. Caspary, Erik P. Gilson, Jeremy Goodman, and Hantao Ji

Phys. Rev. E 100, 033116 (2019) - Published 24 September, 2019

Kolmogorov or Bolgiano-Obukhov scaling: Universal energy spectra in stably stratified turbulent fluids

Abhik Basu and Jayanta K. Bhattacharjee

Phys. Rev. E 100, 033117 (2019) - Published 24 September, 2019

Direct numerical simulation of vortex-induced instability for a zero-pressure-gradient boundary layer

Aditi Sengupta, V. K. Suman, and Tapan K. Sengupta

Phys. Rev. E 100, 033118 (2019) - Published 26 September, 2019

Plasma Physics

Modeling the solid-to-plasma transition for laser imprinting in direct-drive inertial confinement fusion

G. Duchateau, S. X. Hu, A. Pineau, A. Kar, B. Chimier, A. Casner, V. Tikhonchuk, V. N. Goncharov, P. B. Radha, and E. M. Campbell

Phys. Rev. E 100, 033201 (2019) - Published 3 September, 2019

Electrical resistivity calculations in dense plasmas

Gérald Faussurier and Christophe Blancard

Phys. Rev. E 100, 033202 (2019) - Published 4 September, 2019

Electronic-state-resolved analysis of high-enthalpy air plasma flows

Sung Min Jo, Oh Joon Kwon, and Jae Gang Kim

Phys. Rev. E 100, 033203 (2019) - Published 5 September, 2019

Acoustic self-oscillation in a spherical microwave plasma

Seth Pree, Seth Putterman, and John P. Koulakis

Phys. Rev. E 100, 033204 (2019) - Published 6 September, 2019

Plasma volume holograms for focusing and mode conversion of ultraintense laser pulses

G. Lehmann and K. H. Spatschek

Phys. Rev. E 100, 033205 (2019) - Published 6 September, 2019

Kinetic simulations of fusion ignition with hot-spot ablator mix

James D. Sadler, Yingchao Lu, Benjamin Spiers, Marko W. Mayr, Alex Savin, Robin H. W. Wang, Ramy Aboushelbaya, Kevin Glize, Robert Bingham, Hui Li, Kirk A. Flippo, and Peter A. Norreys

Phys. Rev. E 100, 033206 (2019) - Published 9 September, 2019

Depinning dynamics of two-dimensional dusty plasmas on a one-dimensional periodic substrate

W. Li, K. Wang, C. Reichhardt, C. J. O. Reichhardt, M. S. Murillo, and Yan Feng

Phys. Rev. E 100, 033207 (2019) - Published 20 September, 2019

Retrieving fields from proton radiography without source profiles

M. F. Kasim, A. F. A. Bott, P. Tzeferacos, D. Q. Lamb, G. Gregori, and S. M. Vinko

Phys. Rev. E 100, 033208 (2019) - Published 24 September, 2019

Physics of relativistic collisionless shocks. II. Dynamics of the background plasma

Martin Lemoine, Arno Vanthieghem, Guy Pelletier, and Laurent Gremillet

Phys. Rev. E 100, 033209 (2019) - Published 24 September, 2019

Physics of relativistic collisionless shocks. III. The suprathermal particles

Martin Lemoine, Guy Pelletier, Arno Vanthieghem, and Laurent Gremillet

Phys. Rev. E 100, 033210 (2019) - Published 24 September, 2019

Fickian yet non-Gaussian diffusion in two-dimensional Yukawa liquids

Zahra Ghannad

Phys. Rev. E 100, 033211 (2019) - Published 25 September, 2019

Avalanches triggered by Kelvin-Helmholtz instability in a cylindrical plasma device

Y. Lang, Z. B. Guo, X. G. Wang, and B. Li

Phys. Rev. E 100, 033212 (2019) - Published 26 September, 2019

Multicomponent mutual diffusion in the warm, dense matter regime

A. J. White, C. Ticknor, E. R. Meyer, J. D. Kress, and L. A. Collins

Phys. Rev. E 100, 033213 (2019) - Published 30 September, 2019

Equation of state, ionic structure, and phase diagram of warm dense krypton

Zhao-Qi Wang, Zhi-Guo Li, Yu-Feng Wang, Lei Liu, Yun-Jun Gu, Qi-Feng Chen, and Xiang-Rong Chen

Phys. Rev. E 100, 033214 (2019) - Published 30 September, 2019

Computational Physics

Identifying metastable states of biomolecules by trajectory mapping and density peak clustering

Chuanbiao Zhang, Shun Xu, and Xin Zhou

Phys. Rev. E 100, 033301 (2019) - Published 3 September, 2019

Controlled exploration of chemical space by machine learning of coarse-grained representations

Christian Hoffmann, Roberto Menichetti, Kiran H. Kanekal, and Tristan Bereau

Phys. Rev. E 100, 033302 (2019) - Published 3 September, 2019

Evaluating the Jones polynomial with tensor networks

Konstantinos Meichanetzidis and Stefanos Kourtis

Phys. Rev. E 100, 033303 (2019) - Published 9 September, 2019

Joint effect of advection, diffusion, and capillary attraction on the spatial structure of particle depositions from evaporating droplets

K. S. Kolegov and L. Yu. Barash

Phys. Rev. E 100, 033304 (2019) - Published 10 September, 2019

EDITORS' SUGGESTION

Laser speckle imaging of flowing blood: A numerical study

Kevin van As, Jorne Boterman, Chris R. Kleijn, Sasa Kenjeres, and Nandini Bhattacharya

Phys. Rev. E 100, 033317 (2019) - Published 26 September, 2019

Implicit atomistic viscosities in smoothed dissipative particle dynamics

Morgane Borreguero, Deniz Bezgin, Stefan Adami, and Nikolaus A. Adams

Phys. Rev. E 100, 033318 (2019) - Published 30 September, 2019

ERRATA

Erratum: General relations between the power, efficiency, and dissipation for the irreversible heat engines in the nonlinear response regime [Phys. Rev. E 97, 012141 (2018)]

I. Iyyappan and M. Ponmurugan

Phys. Rev. E 100, 039901 (2019) - Published 3 September, 2019

Erratum: Characteristic functions of quantum heat with baths at different temperatures [Phys. Rev. E 97, 062117 (2018)]

Erik Aurell

Phys. Rev. E 100, 039902 (2019) - Published 27 September, 2019

Erratum: In-phase synchronization in complex oscillator networks by adaptive delayed feedback control [Phys. Rev. E 98, 042302 (2018)]

Viktor Novičenko and Irmantas Ratas

Phys. Rev. E 100, 039903 (2019) - Published 27 September, 2019

Erratum: Viscosity and real-space molecular motion of water: Observation with inelastic x-ray scattering [Phys. Rev. E 98, 022604 (2018)]

Yuya Shinohara, Wojciech Dmowski, Takuya Iwashita, Bin Wu, Daisuke Ishikawa, Alfred Q. R. Baron, and Takeshi Egami

Phys. Rev. E 100, 039904 (2019) - Published 30 September, 2019