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Rare behavior of growth processes via umbrella sampling of trajectories

Katherine Klymko1, Phillip L. Geissler1, Juan P. Garrahan2, and Stephen Whitelam3,*

  • 1Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, USA
  • 2School of Physics and Astronomy, University of Nottingham, Nottingham NG7 2RD, England, United Kingdom
  • 3Molecular Foundry, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA

  • *swhitelam@lbl.gov

Phys. Rev. E 97, 032123 – Published 19 March, 2018

DOI: https://doi.org/10.1103/PhysRevE.97.032123

Abstract

We compute probability distributions of trajectory observables for reversible and irreversible growth processes. These results reveal a correspondence between reversible and irreversible processes, at particular points in parameter space, in terms of their typical and atypical trajectories. Thus key features of growth processes can be insensitive to the precise form of the rate constants used to generate them, recalling the insensitivity to microscopic details of certain equilibrium behavior. We obtained these results using a sampling method, inspired by the “s-ensemble” large-deviation formalism, that amounts to umbrella sampling in trajectory space. The method is a simple variant of existing approaches, and applies to ensembles of trajectories controlled by the total number of events. It can be used to determine large-deviation rate functions for trajectory observables in or out of equilibrium.

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References (45)

  1. K. Kremer, J. Aerosol Sci. 9, 243 (1978).
  2. D. Stauffer, J. Aerosol Sci. 7, 319 (1976).
  3. J. Schmelzer, J. Schmelzer, Jr., and I. Gutzow, J. Chem. Phys. 112, 3820 (2000).
  4. R. Scarlett, J. Crocker, and T. Sinno, J. Chem. Phys. 132, 234705 (2010).
  5. A. Kim, R. Scarlett, P. Biancaniello, T. Sinno, and J. Crocker, Nat. Mater. 8, 52 (2008).
  6. E. Sanz, C. Valeriani, D. Frenkel, and M. Dijkstra, Phys. Rev. Lett. 99, 055501 (2007).
  7. B. Peters, J. Chem. Phys. 131, 244103 (2009).
  8. S. Whitelam, L. O. Hedges, and J. D. Schmit, Phys. Rev. Lett. 112, 155504 (2014).
  9. R. J. Allen, C. Valeriani, and P. R. ten Wolde, J. Phys.: Condens. Matter 21, 463102 (2009).
  10. P. G. Bolhuis, D. Chandler, C. Dellago, and P. L. Geissler, Annu. Rev. Phys. Chem. 53, 291 (2002).
  11. J. A. Bucklew, Large Deviation Techniques in Decision, Simulation, and Estimation (Wiley, New York, 1990).
  12. R. Chetrite and H. Touchette, Poincaré 16, 2005 (2015).
  13. R. Chetrite and H. Touchette, J. Stat. Mech.: Theory Exp. (2015) P12001.
  14. C. Giardina, J. Kurchan, V. Lecomte, and J. Tailleur, J. Stat. Phys. 145, 787 (2011).
  15. C. Giardina, J. Kurchan, and L. Peliti, Phys. Rev. Lett. 96, 120603 (2006).
  16. T. Nemoto, F. Bouchet, R. L. Jack, and V. Lecomte, Phys. Rev. E 93, 062123 (2016).
  17. V. Lecomte and J. Tailleur, J. Stat. Mech.: Theory Exp. (2007) P03004.
  18. T. Nemoto, in Phenomenological Structure for the Large Deviation Principle in Time-Series Statistics (Springer, New York, 2016), pp. 17–39.
  19. R. G. Morris and T. Rogers, J. Phys. A: Math. Theor. 47, 342003 (2014).
  20. K. Klymko, J. P. Garrahan, and S. Whitelam, Phys. Rev. E 96, 042126 (2017).
  21. M. Eden, Dynamics of Fractal Surfaces 4, 223 (1961).
  22. M. Ausloos, N. Vandewalle, and R. Cloots, Europhys. Lett. 24, 629 (1993).
  23. J. Candia and E. V. Albano, Int. J. Mod. Phys. C 19, 1617 (2008).
  24. H. Touchette, arXiv:1106.4146 (2011).
  25. D. Ruelle, Thermodynamic Formalism: The Mathematical Structure of Equilibrium Statistical Mechanics (Cambridge University, Cambridge, England, 2004).
  26. J. P. Garrahan, R. L. Jack, V. Lecomte, E. Pitard, K. van Duijvendijk, and F. van Wijland, Phys. Rev. Lett. 98, 195702 (2007).
  27. V. Lecomte, C. Appert-Rolland, and F. van Wijland, J. Stat. Phys. 127, 51 (2007).
  28. H. Touchette, Phys. Rep. 478, 1 (2009).
  29. J. P. Garrahan, R. L. Jack, V. Lecomte, E. Pitard, K. van Duijvendijk, and F. van Wijland, J. Phys. A: Math. Theor. 42, 075007 (2009).
  30. L. O. Hedges, R. L. Jack, J. P. Garrahan, and D. Chandler, Science 323, 1309 (2009).
  31. T. Nemoto, R. L. Jack, and V. Lecomte, Phys. Rev. Lett. 118, 115702 (2017).
  32. R. L. Jack and P. Sollich, J. Phys. A: Math. Theor. 47, 015003 (2013).
  33. C. Maes and K. Netočný, Europhys. Lett. 82, 30003 (2008).
  34. G. Torrie and J. Valleau, J. Comput. Phys. 23, 187 (1977).
  35. U. Ray, G. K. Chan, and D. T. Limmer, arXiv:1708.00459 (2017).
  36. C. M. Rohwer, F. Angeletti, and H. Touchette, Phys. Rev. E 92, 052104 (2015).
  37. A. A. Budini, R. M. Turner, and J. P. Garrahan, J. Stat. Mech.: Theory Exp. (2014) P03012.
  38. In the constant-time ensemble the probability of generating a portion of trajectory in which a jump CC occurs in a time Δt is eR(C)ΔtW(CC). In the constant-event-number ensemble we track events but not time; the corresponding weight is 0dΔteR(C)ΔtW(CC)=W(CC)/R(C)
  39. “Typical” means a value around which trajectories concentrate [28]. For models with one attractor this value is the mean value; for models with multiple attractors there can be multiple typical values of the observable
  40. Such techniques would produce reference models whose rates effectively absorb the integral in (16), so that it does not appear in the weight function
  41. R. Ellis, Entropy, Large Deviations, and Statistical Mechanics (Springer, New York, 2007).
  42. This dual formulation of the coin-toss problem illustrates that it is possible to ask meaningful questions of time-dependent processes even without explicit consideration of time. The classic question is to ask how many heads are in a certain number of tosses, regardless of how rapidly coins are tossed.
  43. R. S. Ellis, Large Deviations and Statistical Mechanics (Springer, New York, 1985).
  44. P. Paga and R. Kühn, Phys. Rev. E 96, 022126 (2017).
  45. F. L. H. Brown, Phys. Rev. Lett. 90, 028302 (2003).

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