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Multiresolution phase extension of a trypsin inhibitor structure from to based on diffraction amplitudes alone
Phys. Rev. E 80, 047701 – Published 22 October, 2009
DOI: https://doi.org/10.1103/PhysRevE.80.047701
Abstract
For a specific structure of trypsin inhibitor, starting from a phase set, about 80% of the phases are correctly determined within an error of by applying a multiresolution refinement procedure. The refinement proceeds both in real and reciprocal spaces. In extending the structure from 5 to , the amplitudes of the reflections are the only requirements for this procedure. In contrast to the conventional phase extension scheme, the amplitudes are used not only in the Fourier synthesis but also in the real-space density modifications.
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References (11)
- Z. H. Zhou, M. L. Baker, W. Jiang, M. Dougherty, J. Jakana, G. Dong, G. Lu, and W. Chiu, Nat. Struct. Biol. 8, 868 (2001).
- S. J. Ludtke, D. H. Chen, J. L. Song, D. T. Chuang, and W. Chiu, Structure 12, 1129 (2004).
- X. Liu and W. P. Su, Phys. Rev. E 66, 066703 (2002).
- P. Chacón, F. Morán, J. F. Díaz, E. Pantos, and J. M. Andrew, Biophys. J. 74, 2760 (1998).
- S. Kirkpatrick, C. D. Gelatt Jr., and M. P. Vecchi, Science 220, 671 (1983).
- W. P. Su, Physica A 221, 193 (1995).
- M. Woolfson and H. F. Fan, Physical and Non-physical Methods of Solving Crystal Structures (Cambridge University Press, Cambridge, England, 1995).
- D. Sayre, Acta Crystallogr., Sect. A: Found. Crystallogr. 30, 180 (1974).
- C. I. Chou and T. K. Lee, Acta Crystallogr., Sect. A: Found. Crystallogr. 58, 42 (2002).
- S. T. Miller, J. M. Hogle, and D. J. Filman, J. Mol. Biol. 307, 499 (2001).
- J. Wilson and P. Main, Acta Crystallogr., Sect. D: Biol. Crystallogr. 56, 625 (2000).