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Three-dimensional granular deposits characterized by persistent homology

Sergio Ardanza-Trevijano1,2, Roberto Arévalo3,4, Sahily Estradé1, Diego Maza1, and Iker Zuriguel1

  • 1Departamento de Física y Matemática Aplicada, Facultad de Ciencias, Universidad de Navarra, E-31080 Pamplona, Spain
  • 2Instituto de Ciencia de Datos e Inteligencia Artificial, Universidad de Navarra, E-31080 Pamplona, Spain
  • 3CIRCE - Technology Center, Ranillas Ave. 3D, 1st floor, 50018 Zaragoza, Spain
  • 4STEAM, Universidad Europea de Valencia, Paseo de la Alameda, 7, 46010 Valencia, Spain

Phys. Rev. E 111, 045413 – Published 14 April, 2025

DOI: https://doi.org/10.1103/PhysRevE.111.045413

Abstract

In this work, we analyze the performance of different topological metrics to characterize the three-dimensional structure of a granular sample. In particular, we investigate the problem of granular tapping as it has been shown that different tapping intensities may drive the system to configurations that, sharing the same global packing fraction, are slightly different; hence supposing a challenge in terms of differentiation using only geometrical features. Provided that persistent homology was shown to be a convenient tool to distinguish among two-dimensional deposits in the same scenario, we further extend this machinery to evaluate its performance in 3D cases. We find that, generically, two-dimensional topological features are more appropriate to distinguishing among different states than one-dimensional ones.

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References (38)

  1. S.F. Edwards and R.B.S. Oakeshott, Theory of powders, Physica A 157, 1080 (1989).
  2. R. Blumenfeld, J. F. Jordan, and S. F. Edwards, Interdependence of the volume and stress ensembles and equipartition in statistical mechanics of granular systems, Phys. Rev. Lett. 109, 238001 (2012).
  3. E. R. Nowak, J. B. Knight, E. Ben-Naim, H. M. Jaeger, and S. R. Nagel, Density fluctuations in vibrated granular materials, Phys. Rev. E 57, 1971 (1998).
  4. E. Nowak, J. Knight, M. Povinelli, H. Jaeger, and S. Nagel, Reversibility and irreversibility in the packing of vibrated granular material, Powder Technol. 94, 79 (1997).
  5. L. A. Pugnaloni, I. Sánchez, P. A. Gago, J. Damas, I. Zuriguel, and D. Maza, Towards a relevant set of state variables to describe static granular packings, Phys. Rev. E 82, 050301(R) (2010).
  6. S. Blumenfeld and S. Edwards, On granular stress statistics: Compactivity, angoricity, and some open issues, J. Phys. Chem. B 113, 3981 (2009).
  7. M. Newman, The structure and function of complex networks, SIAM Rev. 45, 167 (2003).
  8. R. Arévalo, L. A. Pugnaloni, I. Zuriguel, and D. Maza, Contact network topology in tapped granular media, Phys. Rev. E 87, 022203 (2013).
  9. D. M. Walker and A. Tordesillas, Taxonomy of granular rheology from grain property networks, Phys. Rev. E 85, 011304 (2012).
  10. D. Walker and A. Tordesillas, Topological evolution in dense granular materials: A complex networks perspective, Int. J. Solids Struct. 47, 624 (2010).
  11. D. M. Walker, A. Tordesillas, I. Einav, and M. Small, Complex networks in confined comminution, Phys. Rev. E 84, 021301 (2011).
  12. A. Tordesillas, D. Walker, E. Andò, and G. Viggiani, Revisiting localized deformation in sand with complex systems, Proc. R. Soc. A. 469, 20120606 (2013).
  13. A. Tordesillas, D. M. Walker, and Q. Lin, Force cycles and force chains, Phys. Rev. E 81, 011302 (2010).
  14. A. G. Smart and J. Ottino, Evolving loop structure in gradually tilted two-dimensional granular packings, Phys. Rev. E 77, 041307 (2008).
  15. N. Nguyen, H. Magoariec, B. Cambou, and A. Danescu, Analysis of structure and strain at the meso-scale in 2D granular materials, Int. J. Solids Struct. 46, 3257 (2009).
  16. N. Nguyen, H. Magoariec, and B. Cambou, Local stress analysis in granular materials at a mesoscale, Int. J. Numer. Anal. Methods Geomech. 36, 1609 (2012).
  17. D. S. Bassett, E. T. Owens, K. E. Daniels, and M. A. Porter, Influence of network topology on sound propagation in granular materials, Phys. Rev. E 86, 041306 (2012).
  18. S. Ostojic, E. Somfai, and B. Nienhuis, Scale invariance and universality of force networks in static granular matter, Nature (London) 439, 828 (2006).
  19. R. Arévalo, I. Zuriguel, and D. Maza, Topological properties of the contact network of granular materials, Int. J. Bifurcation Chaos 19, 695 (2009).
  20. R. Arévalo, I. Zuriguel, and D. Maza, Topology of the force network in the jamming transition of an isotropically compressed granular packing, Phys. Rev. E 81, 041302 (2010).
  21. R. Arévalo, I. Zuriguel, S. Ardanza-Trevijano, and D. Maza, Third order loops of contacts in a granular force network, Int. J. Bifurcation Chaos 20, 897 (2010).
  22. F. Radjai, M. Jean, J.-J. Moreau, and S. Roux, Force distributions in dense two-dimensional granular systems, Phys. Rev. Lett. 77, 274 (1996).
  23. N. Rivier, Extended constraints, arches and soft modes in granular materials, J. Non-Cryst. Solids 352, 4505 (2006).
  24. L. Kondic, A. Goullet, C. O'Hern, M. Kramar, K. Mischaikow, and R. Behringer, Topology of force networks in compressed granular media, Europhys. Lett. 97, 54001 (2012).
  25. Y. Hiraoka, T. Nakamura, A. Hirata, E. G. Escolar, K. Matsue, and Y. Nishiura, Hierarchical structures of amorphous solids characterized by persistent homology, Proc. Natl. Acad. Sci. USA 113, 7035 (2016).
  26. S. S. Sørensen, T. Du, C. A. Biscio, L. Fajstrup, and M. M. Smedskjaer, Persistent homology: A tool to understand medium-range order glass structure, J. Non-Cryst. Solids: X 16, 100123 (2022).
  27. D. Bhaskar, W. Y. Zhang, and I. Y. Wong, Topological data analysis of collective and individual epithelial cells using persistent homology of loops, Soft Matter 17, 4653 (2021).
  28. I. Membrillo Solis, T. Orlova, K. Bednarska, P. Lesiak, T. R. Woliński, G. D'Alessandro, J. Brodzki, and M. Kaczmarek, Tracking the time evolution of soft matter systems via topological structural heterogeneity, Commun. Mater. 3, 1 (2022).
  29. L. Kondic, X. Fang, W. Losert, C. S. O'Hern, and R. P. Behringer, Microstructure evolution during impact on granular matter, Phys. Rev. E 85, 011305 (2012).
  30. G. Carlsson, J. Gorham, M. Kahle, and J. Mason, Computational topology for configuration spaces of hard disks, Phys. Rev. E 85, 011303 (2012).
  31. S. Ardanza-Trevijano, I. Zuriguel, R. Arévalo, and D. Maza, Topological analysis of tapped granular media using persistent homology, Phys. Rev. E 89, 052212 (2014).
  32. M. Kramar, A. Goullet, L. Kondic, and K. Mischaikow, Persistence of force networks in compressed granular media, Phys. Rev. E 87, 042207 (2013).
  33. S. Plimpton, Fast parallel algorithms for short-range molecular dynamics, J. Comput. Phys. 117, 1 (1995).
  34. Y.-M. Chung and A. Lawson, Persistence curves: A canonical framework for summarizing persistence diagrams, Adv. Comput. Math. 48, 6 (2022).
  35. N. Atienza, G.-D. Rocio, and M. Soriano-Trigueros, On the stability of persistent entropy and new summary functions for topological data analysis, Pattern Recognit. 107, 107509 (2020).
  36. M. Saadatfar, H. Takeuchi, V. Robins, N. Francois, and Y. Hiraoka, Pore configuration landscape of granular crystallization, Nat. Commun. 8, 15082 (2017).
  37. L. Xian, H. Adams, C. M. Topaz, and L. Ziegelmeier, Capturing dynamics of time-varying data via topology, Found. Data Sci. 4, 1 (2022).
  38. P. Dłotko and D. Gurnari, Euler characteristic curves and profiles: A stable shape invariant for big data problems, GigaScience 12, giad094 (2023).

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