HIGHLIGHTED ARTICLES

Stochastic fluctuations and quasipattern formation in reaction-diffusion systems with anomalous transport

Joseph W. Baron and Tobias Galla

Phys. Rev. E 99, 052124 (2019) - Published 20 May, 2019

This paper extends the study of reaction-diffusion systems with anomalous transport to take into account the intrinsic noise due to a finite number of particles. Starting from an individual-based model, the authors use a generating-functional approach and test it on the formation of patterns in subdiffusive conditions. The results are in good agreement with computer simulations and can be extended to other reacting systems that exhibit anomalous diffusion.

Quantitative assessment of the spatial crowding heterogeneity in cellular fluids

Claudia Donth and Matthias Weiss

Phys. Rev. E 99, 052415 (2019) - Published 28 May, 2019

Spatial crowding in fluid compartments of living cells is assessed through image analysis. The authors find that the cytoplasm is more crowded and has greater spatial heterogeneity than the nucleoplasm. These differences persist even during cell division, when the nuclear envelope no longer separates the fluid compartments.

Searching for collective behavior in a small brain

Xiaowen Chen, Francesco Randi, Andrew M. Leifer, and William Bialek

Phys. Rev. E 99, 052418 (2019) - Published 30 May, 2019

A collection of interacting units can exhibit emergent phenomena that are more than the sum of its parts. In this article, the authors used this idea to describe the activity of the brain.

Statistical mechanics of asymmetric tethered membranes: Spiral and crumpled phases

Tirthankar Banerjee, Niladri Sarkar, John Toner, and Abhik Basu

Phys. Rev. E 99, 053004 (2019) - Published 29 May, 2019

This paper develops a statistical mechanics approach to asymmetric tethered membranes. The asymmetry gives rise to a long-ranged interaction between the mean and Gaussian curvatures, whose strength determines the onset of a new double-spiral phase or a crumpling of the membrane.

Control-oriented model of dielectrophoresis and electrorotation for arbitrarily shaped objects

Tomáš Michálek, Aude Bolopion, Zdeněk Hurák, and Michaël Gauthier

Phys. Rev. E 99, 053307 (2019) - Published 24 May, 2019

Neutral objects, such as cells and nanoparticles, can move in the presence of an inhomogeneous electric field. Modeling this phenomenon, commonly known as dielectrophoresis, requires several approximations. The authors here propose an efficient method to overcome some of the limitations of an existing technique known as effective multipole method, and validate their method against reference numerical solutions.

RAPID COMMUNICATIONS

Statistical Physics

Quantum work statistics and resource theories: Bridging the gap through Rényi divergences

G. Guarnieri, N. H. Y. Ng, K. Modi, J. Eisert, M. Paternostro, and J. Goold

Phys. Rev. E 99, 050101(R) (2019) - Published 13 May, 2019

Fidelity susceptibility in Gaussian random ensembles

Piotr Sierant, Artur Maksymov, Marek Kuś, and Jakub Zakrzewski

Phys. Rev. E 99, 050102(R) (2019) - Published 20 May, 2019

Observation of nonscalar and logarithmic correlations in two- and three-dimensional percolation

Xiaojun Tan, Romain Couvreur, Youjin Deng, and Jesper Lykke Jacobsen

Phys. Rev. E 99, 050103(R) (2019) - Published 21 May, 2019

Impact of eigenstate thermalization on the route to equilibrium

Jonas Richter, Jochen Gemmer, and Robin Steinigeweg

Phys. Rev. E 99, 050104(R) (2019) - Published 24 May, 2019

Nonlinear Dynamics and Chaos

Shallow-water rogue waves: An approach based on complex solutions of the Korteweg–de Vries equation

A. Ankiewicz, Mahyar Bokaeeyan, and N. Akhmediev

Phys. Rev. E 99, 050201(R) (2019) - Published 30 May, 2019

Networks and Complex Systems

Propagation of wind-power-induced fluctuations in power grids

Hauke Haehne, Katrin Schmietendorf, Samyak Tamrakar, Joachim Peinke, and Stefan Kettemann

Phys. Rev. E 99, 050301(R) (2019) - Published 20 May, 2019

Spreading of computer viruses on time-varying networks

Terry Brett, George Loukas, Yamir Moreno, and Nicola Perra

Phys. Rev. E 99, 050303(R) (2019) - Published 24 May, 2019

Fault tolerance of random graphs with respect to connectivity: Mean-field approximation for semidense random graphs

Satoshi Takabe, Takafumi Nakano, and Tadashi Wadayama

Phys. Rev. E 99, 050304(R) (2019) - Published 29 May, 2019

Biological Physics

Sound of an axon's growth

Frederic Folz, Lukas Wettmann, Giovanna Morigi, and Karsten Kruse

Phys. Rev. E 99, 050401(R) (2019) - Published 1 May, 2019

Granular Materials

Universal non-mean-field scaling in the density of states of amorphous solids

Harukuni Ikeda

Phys. Rev. E 99, 050901(R) (2019) - Published 9 May, 2019

Scaling theory of shear-induced inhomogeneous dilation in granular matter

Prasenjit Das, H. George E. Hentschel, and Itamar Procaccia

Phys. Rev. E 99, 050902(R) (2019) - Published 20 May, 2019

Computational Physics

Application of atomic stress to compute heat flux via molecular dynamics for systems with many-body interactions

Donatas Surblys, Hiroki Matsubara, Gota Kikugawa, and Taku Ohara

Phys. Rev. E 99, 051301(R) (2019) - Published 14 May, 2019

ARTICLES

Statistical Physics

Nonequilibrium abundances for the building blocks of life

Elan Stopnitzky and Susanne Still

Phys. Rev. E 99, 052101 (2019) - Published 2 May, 2019

Occupation-time statistics of a gas of interacting diffusing particles

Tal Agranov, P. L. Krapivsky, and Baruch Meerson

Phys. Rev. E 99, 052102 (2019) - Published 2 May, 2019

Effects of boundary conditions on magnetic friction

Kentaro Sugimoto

Phys. Rev. E 99, 052103 (2019) - Published 6 May, 2019

Hamiltonian short-time critical dynamics of the three-dimensional XY model

Lindiane C. de Souza, Adauto J. F. de Souza, and Marcelo L. Lyra

Phys. Rev. E 99, 052104 (2019) - Published 6 May, 2019

Giant disparity and a dynamical phase transition in large deviations of the time-averaged size of stochastic populations

Pini Zilber, Naftali R. Smith, and Baruch Meerson

Phys. Rev. E 99, 052105 (2019) - Published 6 May, 2019

Powerful harmonic charging in a quantum battery

Yu-Yu Zhang, Tian-Ran Yang, Libin Fu, and Xiaoguang Wang

Phys. Rev. E 99, 052106 (2019) - Published 8 May, 2019

Role of nonconservative scattering forces and damping on Brownian particles in optical traps

Matthieu Mangeat, Yacine Amarouchene, Yann Louyer, Thomas Guérin, and David S. Dean

Phys. Rev. E 99, 052107 (2019) - Published 8 May, 2019

Local conservation laws in ultracold Fermi systems with time-dependent interaction potential

P. Lipavský and Pei-Jen Lin

Phys. Rev. E 99, 052108 (2019) - Published 10 May, 2019

High-density percolation on the modified Bethe lattice

C. Widder and T. Schilling

Phys. Rev. E 99, 052109 (2019) - Published 10 May, 2019

All- and one-particle distribution functions at nonequilibrium steady state under thermal gradient

Hiroki Matsubara, Gota Kikugawa, and Taku Ohara

Phys. Rev. E 99, 052110 (2019) - Published 10 May, 2019

Constrained optimization as ecological dynamics with applications to random quadratic programming in high dimensions

Pankaj Mehta, Wenping Cui, Ching-Hao Wang, and Robert Marsland, III

Phys. Rev. E 99, 052111 (2019) - Published 13 May, 2019

Universal broadening of zero modes: A general framework and identification

M. Kieburg, A. Mielke, and K. Splittorff

Phys. Rev. E 99, 052112 (2019) - Published 13 May, 2019

Logarithmic coarsening in the Coulomb glass

Preeti Bhandari, Vikas Malik, and Sanjay Puri

Phys. Rev. E 99, 052113 (2019) - Published 13 May, 2019

Violation of the temperature-signifies-heat-flow rule in systems with long-range interactions

Ji-Xuan Hou

Phys. Rev. E 99, 052114 (2019) - Published 13 May, 2019

Motional narrowing under Markovian and non-Markovian hopping transitions in inhomogeneous broadened absorption line shape

Kazuhiko Seki and Kazuhiro Marumoto

Phys. Rev. E 99, 052115 (2019) - Published 14 May, 2019

Subdiffusive continuous-time random walks with stochastic resetting

Łukasz Kuśmierz and Ewa Gudowska-Nowak

Phys. Rev. E 99, 052116 (2019) - Published 14 May, 2019

Generalized Wigner–von Neumann entropy and its typicality

Zhigang Hu (胡志刚), Zhenduo Wang (王朕铎), and Biao Wu (吴飙)

Phys. Rev. E 99, 052117 (2019) - Published 14 May, 2019

Multimodal stationary states under Cauchy noise

Michał Cieśla, Karol Capała, and Bartłomiej Dybiec

Phys. Rev. E 99, 052118 (2019) - Published 14 May, 2019

Random search with resetting as a strategy for optimal pollination

Tal Robin, Lilach Hadany, and Michael Urbakh

Phys. Rev. E 99, 052119 (2019) - Published 15 May, 2019

Predicting continuous and discontinuous phase decompositions using steepest-entropy-ascent quantum thermodynamics

Ryo Yamada, Michael R. von Spakovsky, and William T. Reynolds, Jr.

Phys. Rev. E 99, 052121 (2019) - Published 17 May, 2019

Biologically motivated asymmetric exclusion process: Interplay of congestion in RNA polymerase traffic and slippage of nascent transcript

Soumendu Ghosh, Annwesha Dutta, Shubhadeep Patra, Jun Sato, Katsuhiro Nishinari, and Debashish Chowdhury

Phys. Rev. E 99, 052122 (2019) - Published 17 May, 2019

Effect of bias in a reaction-diffusion system in two dimensions

Pratik Mullick and Parongama Sen

Phys. Rev. E 99, 052123 (2019) - Published 17 May, 2019

Stochastic fluctuations and quasipattern formation in reaction-diffusion systems with anomalous transport

Joseph W. Baron and Tobias Galla

Phys. Rev. E 99, 052124 (2019) - Published 20 May, 2019

This paper extends the study of reaction-diffusion systems with anomalous transport to take into account the intrinsic noise due to a finite number of particles. Starting from an individual-based model, the authors use a generating-functional approach and test it on the formation of patterns in subdiffusive conditions. The results are in good agreement with computer simulations and can be extended to other reacting systems that exhibit anomalous diffusion.

Fractional Langevin equation from damped bath dynamics

Alex V. Plyukhin

Phys. Rev. E 99, 052125 (2019) - Published 20 May, 2019

Relativistic dissipation obeys Chapman-Enskog asymptotics: Analytical and numerical evidence as a basis for accurate kinetic simulations

A. Gabbana, D. Simeoni, S. Succi, and R. Tripiccione

Phys. Rev. E 99, 052126 (2019) - Published 20 May, 2019

Exact results for first-passage-time statistics in biased quenched trap models

Takuma Akimoto and Keiji Saito

Phys. Rev. E 99, 052127 (2019) - Published 20 May, 2019

Diffusion of interface and heat conduction in the three-dimensional Ising model

Yusuke Masumoto and Shinji Takesue

Phys. Rev. E 99, 052128 (2019) - Published 20 May, 2019

Phase diagram of a system of hard cubes on the cubic lattice

N. Vigneshwar, Dipanjan Mandal, Kedar Damle, Deepak Dhar, and R. Rajesh

Phys. Rev. E 99, 052129 (2019) - Published 20 May, 2019

Discrete hydrodynamics near solid planar walls

D. Duque-Zumajo, Diego Camargo, J. A. de la Torre, Farid Chejne, and Pep Español

Phys. Rev. E 99, 052130 (2019) - Published 24 May, 2019

Entropy production and heat capacity of systems under time-dependent oscillating temperature

Carlos E. Fiore and Mário J. de Oliveira

Phys. Rev. E 99, 052131 (2019) - Published 28 May, 2019

Cyclic annealing as an iterated random map

Muhittin Mungan and Thomas A. Witten

Phys. Rev. E 99, 052132 (2019) - Published 28 May, 2019

Exclusion in junction geometries

Keming Zhang, P. L. Krapivsky, and S. Redner

Phys. Rev. E 99, 052133 (2019) - Published 28 May, 2019

Sedimentation of a suspension of rods: Monte Carlo simulation of a continuous two-dimensional problem

Nikolai I. Lebovka, Yuri Yu. Tarasevich, Leonid A. Bulavin, Valery I. Kovalchuk, and Nikolai V. Vygornitskii

Phys. Rev. E 99, 052135 (2019) - Published 28 May, 2019

Fractional electron transfer kinetics and a quantum breaking of ergodicity

Igor Goychuk

Phys. Rev. E 99, 052136 (2019) - Published 28 May, 2019

Kinetic model of adsorption on crystal surfaces

Kazuo Aoki and Vincent Giovangigli

Phys. Rev. E 99, 052137 (2019) - Published 29 May, 2019

Boltzmann stochastic thermodynamics

Mário J. de Oliveira

Phys. Rev. E 99, 052138 (2019) - Published 30 May, 2019

Quantum chaotic fluctuation-dissipation theorem: Effective Brownian motion in closed quantum systems

Charlie Nation and Diego Porras

Phys. Rev. E 99, 052139 (2019) - Published 30 May, 2019

Correspondence between thermodynamics and inference

Colin H. LaMont and Paul A. Wiggins

Phys. Rev. E 99, 052140 (2019) - Published 30 May, 2019

Methodology to construct large realizations of perfectly hyperuniform disordered packings

Jaeuk Kim and Salvatore Torquato

Phys. Rev. E 99, 052141 (2019) - Published 31 May, 2019

Nonequilibrium driven by an external torque in the presence of a magnetic field

Sangyun Lee and Chulan Kwon

Phys. Rev. E 99, 052142 (2019) - Published 31 May, 2019

Timescales in the quench dynamics of many-body quantum systems: Participation ratio versus out-of-time ordered correlator

Fausto Borgonovi, Felix M. Izrailev, and Lea F. Santos

Phys. Rev. E 99, 052143 (2019) - Published 31 May, 2019

Nonlinear Dynamics and Chaos

Renormalized perturbation approach to instanton-noninstanton transition in nearly integrable tunneling processes

Yasutaka Hanada, Akira Shudo, Teruaki Okushima, and Kensuke S. Ikeda

Phys. Rev. E 99, 052201 (2019) - Published 2 May, 2019

Theoretical study of buckling-based nonlinear transition near a static bifurcation point

Manhee Lee, Sangmin An, and Wonho Jhe

Phys. Rev. E 99, 052202 (2019) - Published 1 May, 2019

First-passage-time distribution in a moving parabolic potential with spatial roughness

Yongge Li, Yong Xu, and Jürgen Kurths

Phys. Rev. E 99, 052203 (2019) - Published 3 May, 2019

Attraction centers and parity-time-symmetric delta-functional dipoles in critical and supercritical self-focusing media

Li Wang, Boris A. Malomed, and Zhenya Yan

Phys. Rev. E 99, 052206 (2019) - Published 9 May, 2019

Perturbation analysis and comparison of network synchronization methods

Zhiwei He, Chenggui Yao, Jun Yu, and Meng Zhan

Phys. Rev. E 99, 052207 (2019) - Published 13 May, 2019

Intermittent stickiness synchronization

Rafael M. da Silva, Cesar Manchein, and Marcus W. Beims

Phys. Rev. E 99, 052208 (2019) - Published 13 May, 2019

Frequency-doubling effect in acoustic reflection by a nonlinear, architected rotating-square metasurface

Xinxin Guo, Vitalyi E. Gusev, Vincent Tournat, Bolei Deng, and Katia Bertoldi

Phys. Rev. E 99, 052209 (2019) - Published 13 May, 2019

Taming intrinsic localized modes in a DNA lattice with damping, external force, and inhomogeneity

Carlos Lawrence Gninzanlong, Frank Thomas Ndjomatchoua, and Clément Tchawoua

Phys. Rev. E 99, 052210 (2019) - Published 13 May, 2019

Finite-barrier corrections for multidimensional barriers in colored noise

Thomas Bartsch, F. Revuelta, R. M. Benito, and F. Borondo

Phys. Rev. E 99, 052211 (2019) - Published 15 May, 2019

Operator dynamics in a Brownian quantum circuit

Tianci Zhou and Xiao Chen

Phys. Rev. E 99, 052212 (2019) - Published 20 May, 2019

Chaotic transport of electron wave packet in Weyl semimetal slab

Abdullah Yar and Safi Ullah Khan

Phys. Rev. E 99, 052213 (2019) - Published 21 May, 2019

Logic gates on stationary dissipative solitons

Bogdan A. Kochetov, Iaroslavna Vasylieva, Alexander Butrym, and Vladimir R. Tuz

Phys. Rev. E 99, 052214 (2019) - Published 22 May, 2019

Lateral inhibition provides a unifying framework for spatiotemporal pattern formation in media comprising relaxation oscillators

R. Janaki, Shakti N. Menon, Rajeev Singh, and Sitabhra Sinha

Phys. Rev. E 99, 052216 (2019) - Published 23 May, 2019

Doubly periodic solutions of the class-I infinitely extended nonlinear Schrödinger equation

M. Crabb and N. Akhmediev

Phys. Rev. E 99, 052217 (2019) - Published 24 May, 2019

Synchronization of oscillators via active media

Derek Orr and Bard Ermentrout

Phys. Rev. E 99, 052218 (2019) - Published 28 May, 2019

Unstable wave-packet perturbations in an advective Cahn-Hilliard process

Antonio Barletta and Michele Celli

Phys. Rev. E 99, 052219 (2019) - Published 29 May, 2019

Turbulent transport in reaction-diffusion systems

A. S. Il'yn, V. A. Sirota, and K. P. Zybin

Phys. Rev. E 99, 052220 (2019) - Published 30 May, 2019

Vibrational antiresonance in nonlinear coupled systems

Prasun Sarkar and Deb Shankar Ray

Phys. Rev. E 99, 052221 (2019) - Published 30 May, 2019

Attenuation behavior of thermoacoustic combustion instability analyzed by a complex-network- and synchronization-based approach

Shogo Murayama and Hiroshi Gotoda

Phys. Rev. E 99, 052222 (2019) - Published 30 May, 2019

Subdiffusive Lévy flights in quantum nonlinear Schrödinger lattices with algebraic power nonlinearity

Alexander V. Milovanov and Alexander Iomin

Phys. Rev. E 99, 052223 (2019) - Published 30 May, 2019

Networks and Complex Systems

Fading of remote synchronization in tree networks of Stuart-Landau oscillators

Baris Karakaya, Ludovico Minati, Lucia Valentina Gambuzza, and Mattia Frasca

Phys. Rev. E 99, 052301 (2019) - Published 1 May, 2019

Impact of perception models on friendship paradox and opinion formation

Eun Lee, Sungmin Lee, Young-Ho Eom, Petter Holme, and Hang-Hyun Jo

Phys. Rev. E 99, 052302 (2019) - Published 10 May, 2019

Optimal geometry of transportation networks

David Aldous and Marc Barthelemy

Phys. Rev. E 99, 052303 (2019) - Published 14 May, 2019

Sampling networks by nodal attributes

Yohsuke Murase, Hang-Hyun Jo, János Török, János Kertész, and Kimmo Kaski

Phys. Rev. E 99, 052304 (2019) - Published 15 May, 2019

Energy cost for controlling complex networks with linear dynamics

Gaopeng Duan, Aming Li, Tao Meng, Guofeng Zhang, and Long Wang

Phys. Rev. E 99, 052305 (2019) - Published 21 May, 2019

Emergence of frustration signals systemic risk

Chandrashekar Kuyyamudi, Anindya S. Chakrabarti, and Sitabhra Sinha

Phys. Rev. E 99, 052306 (2019) - Published 21 May, 2019

Voter model on networks and the multivariate beta distribution

Shintaro Mori, Masato Hisakado, and Kazuaki Nakayama

Phys. Rev. E 99, 052307 (2019) - Published 22 May, 2019

Order parameter allows classification of planar graphs based on balanced fixed points in the Kuramoto model

Franz Kaiser and Karen Alim

Phys. Rev. E 99, 052308 (2019) - Published 23 May, 2019

Graph comparison via the nonbacktracking spectrum

Andrew Mellor and Angelica Grusovin

Phys. Rev. E 99, 052309 (2019) - Published 23 May, 2019

Expanding spatial domains and transient scaling regimes in populations with local cyclic competition

P. P. Avelino, J. Menezes, B. F. de Oliveira, and T. A. Pereira

Phys. Rev. E 99, 052310 (2019) - Published 24 May, 2019

Individual perception dynamics in drunk games

Alberto Antonioni, Luis A. Martinez-Vaquero, Cole Mathis, Leto Peel, and Massimo Stella

Phys. Rev. E 99, 052311 (2019) - Published 28 May, 2019

Biological Physics

Search-and-capture model of cytoneme-mediated morphogen gradient formation

Paul C. Bressloff and Hyunjoong Kim

Phys. Rev. E 99, 052401 (2019) - Published 1 May, 2019

Statistical mechanics of spike events underlying phase space partitioning and sequence codes in large-scale models of neural circuits

Maximilian Puelma Touzel and Fred Wolf

Phys. Rev. E 99, 052402 (2019) - Published 9 May, 2019

Dynamics of tinnitus and coordinated reset therapy

Zachary Jackson and Kurt Wiesenfeld

Phys. Rev. E 99, 052403 (2019) - Published 9 May, 2019

Computational approach to determine the relative biological effectiveness of fast neutrons using the Geant4-DNA toolkit and a DNA atomic model from the Protein Data Bank

Azam Zabihi, Sebastien Incerti, Ziad Francis, Ghasem Forozani, Farid Semsarha, Amir Moslehi, Peiman Rezaeian, and Mario A. Bernal

Phys. Rev. E 99, 052404 (2019) - Published 10 May, 2019

Scaling behavior of nonequilibrium measures in internally driven elastic assemblies

Grzegorz Gradziuk, Federica Mura, and Chase P. Broedersz

Phys. Rev. E 99, 052406 (2019) - Published 15 May, 2019

Effects of inhibitory and excitatory neurons on the dynamics and control of avalanching neural networks

Jacob Carroll, Ada Warren, and Uwe C. Täuber

Phys. Rev. E 99, 052407 (2019) - Published 17 May, 2019

Invasion-controlled pattern formation in a generalized multispecies predator-prey system

D. Bazeia, B. F. de Oliveira, and A. Szolnoki

Phys. Rev. E 99, 052408 (2019) - Published 20 May, 2019

Driven transport on a flexible polymer with particle recycling: A model inspired by transcription and translation

Lucas D. Fernandes and Luca Ciandrini

Phys. Rev. E 99, 052409 (2019) - Published 20 May, 2019

Null model exhibiting synchronized dynamics in uncoupled oscillators

Tuhin Chakrabortty, Akash Suman, Anjali Gupta, Varsha Singh, and Manoj Varma

Phys. Rev. E 99, 052410 (2019) - Published 21 May, 2019

Transport cycle of Escherichia coli lactose permease in a nonhomogeneous random walk model

Yan B. Barreto, Matheus L. Rodrigues, and Adriano M. Alencar

Phys. Rev. E 99, 052411 (2019) - Published 22 May, 2019

Neural activity of heterogeneous inhibitory spiking networks with delay

Stefano Luccioli, David Angulo-Garcia, and Alessandro Torcini

Phys. Rev. E 99, 052412 (2019) - Published 23 May, 2019

Compression stiffening in biological tissues: On the possibility of classic elasticity origins

T. A. Engstrom, K. Pogoda, K. Cruz, P. A. Janmey, and J. M. Schwarz

Phys. Rev. E 99, 052413 (2019) - Published 28 May, 2019

Correlated states in balanced neuronal networks

Cody Baker, Christopher Ebsch, Ilan Lampl, and Robert Rosenbaum

Phys. Rev. E 99, 052414 (2019) - Published 28 May, 2019

Quantitative assessment of the spatial crowding heterogeneity in cellular fluids

Claudia Donth and Matthias Weiss

Phys. Rev. E 99, 052415 (2019) - Published 28 May, 2019

Spatial crowding in fluid compartments of living cells is assessed through image analysis. The authors find that the cytoplasm is more crowded and has greater spatial heterogeneity than the nucleoplasm. These differences persist even during cell division, when the nuclear envelope no longer separates the fluid compartments.

Characteristics of phospholipid vesicles enhanced by adhesion on an annular region

Janja Majhenc and Bojan Božič

Phys. Rev. E 99, 052416 (2019) - Published 28 May, 2019

Extending the linear-noise approximation to biochemical systems influenced by intrinsic noise and slow lognormally distributed extrinsic noise

Emma M. Keizer, Björn Bastian, Robert W. Smith, Ramon Grima, and Christian Fleck

Phys. Rev. E 99, 052417 (2019) - Published 28 May, 2019

Searching for collective behavior in a small brain

Xiaowen Chen, Francesco Randi, Andrew M. Leifer, and William Bialek

Phys. Rev. E 99, 052418 (2019) - Published 30 May, 2019

A collection of interacting units can exhibit emergent phenomena that are more than the sum of its parts. In this article, the authors used this idea to describe the activity of the brain.

Polymers

Solvent self-diffusion dependence on the swelling degree of a hydrogel

Wilson Barros, Jr.

Phys. Rev. E 99, 052501 (2019) - Published 6 May, 2019

Improved approximations of non-Gaussian probability, force, and energy of a single polymer chain

Vahid Morovati and Roozbeh Dargazany

Phys. Rev. E 99, 052502 (2019) - Published 10 May, 2019

Plectoneme dynamics and statistics in braided polymers

Giada Forte, Michele Caraglio, Davide Marenduzzo, and Enzo Orlandini

Phys. Rev. E 99, 052503 (2019) - Published 10 May, 2019

Model-free description of polymer-coated gold nanoparticle dynamics in aqueous solutions obtained by Bayesian analysis of neutron spin echo data

Alessio De Francesco, Luisa Scaccia, R. Bruce Lennox, Eleonora Guarini, Ubaldo Bafile, Peter Falus, and Marco Maccarini

Phys. Rev. E 99, 052504 (2019) - Published 13 May, 2019

Effects of spherical confinement and backbone stiffness on flexible polymer jamming

Samuel M. Soik and Tristan A. Sharp

Phys. Rev. E 99, 052505 (2019) - Published 29 May, 2019

Colloids, Complex Fluids, and Active Matter

Boundary-induced inhomogeneity of particle layers in the solidification of suspensions

Brice Saint-Michel, Marc Georgelin, Sylvain Deville, and Alain Pocheau

Phys. Rev. E 99, 052601 (2019) - Published 1 May, 2019

Self-propelled Vicsek particles at low speed and low density

M. Leticia Rubio Puzzo, Andrés De Virgiliis, and Tomás S. Grigera

Phys. Rev. E 99, 052602 (2019) - Published 2 May, 2019

Topological generalization of the rigid-nonrigid transition in soft-sphere and hard-sphere fluids

Tae Jun Yoon, Min Young Ha, Won Bo Lee, Youn-Woo Lee, and Emanuel A. Lazar

Phys. Rev. E 99, 052603 (2019) - Published 6 May, 2019

Additivity and density fluctuations in Vicsek-like models of self-propelled particles

Subhadip Chakraborti and Punyabrata Pradhan

Phys. Rev. E 99, 052604 (2019) - Published 13 May, 2019

Characterization and control of a bottleneck-induced traffic-jam transition for self-propelled particles in a track

Thomas Barois, Jean-François Boudet, Nicolas Lanchon, Juho S. Lintuvuori, and Hamid Kellay

Phys. Rev. E 99, 052605 (2019) - Published 13 May, 2019

Radial distribution function of Lennard-Jones fluids in shear flows from intermediate asymptotics

Luca Banetta and Alessio Zaccone

Phys. Rev. E 99, 052606 (2019) - Published 20 May, 2019

Geometric control of bacterial surface accumulation

Rachel Mok, Jörn Dunkel, and Vasily Kantsler

Phys. Rev. E 99, 052607 (2019) - Published 24 May, 2019

Liquid Crystals

Stability of binary colloidal crystals immersed in a cholesteric liquid crystal

Setarehalsadat Changizrezaei and Colin Denniston

Phys. Rev. E 99, 052701 (2019) - Published 13 May, 2019

Photoswitchable chevron topographies of glassy nematic coatings

W. X. Qian, Y. Ni, and L. H. He

Phys. Rev. E 99, 052702 (2019) - Published 31 May, 2019

Nanoparticle-controlled glassy dynamics in nematogen-based nanocolloids

Aleksandra Drozd-Rzoska, Szymon Starzonek, Sylwester J. Rzoska, and Samo Kralj

Phys. Rev. E 99, 052703 (2019) - Published 31 May, 2019

Granular Materials

Mean force and fluctuations on a wall immersed in a sheared granular flow

François Kneib, Thierry Faug, Frédéric Dufour, and Mohamed Naaim

Phys. Rev. E 99, 052901 (2019) - Published 7 May, 2019

Seismicity in sheared granular matter

Aghil Abed Zadeh, Jonathan Barés, Joshua E. S. Socolar, and Robert P. Behringer

Phys. Rev. E 99, 052902 (2019) - Published 20 May, 2019

Solid Mechanics

Nonlinear elasticity of incompatible surface growth

Lev Truskinovsky and Giuseppe Zurlo

Phys. Rev. E 99, 053001 (2019) - Published 3 May, 2019

Spatial strain correlations, machine learning, and deformation history in crystal plasticity

Stefanos Papanikolaou, Michail Tzimas, Andrew C. E. Reid, and Stephen A. Langer

Phys. Rev. E 99, 053003 (2019) - Published 16 May, 2019

Statistical mechanics of asymmetric tethered membranes: Spiral and crumpled phases

Tirthankar Banerjee, Niladri Sarkar, John Toner, and Abhik Basu

Phys. Rev. E 99, 053004 (2019) - Published 29 May, 2019

This paper develops a statistical mechanics approach to asymmetric tethered membranes. The asymmetry gives rise to a long-ranged interaction between the mean and Gaussian curvatures, whose strength determines the onset of a new double-spiral phase or a crumpling of the membrane.

Shear-induced contact area anisotropy explained by a fracture mechanics model

A. Papangelo, J. Scheibert, R. Sahli, G. Pallares, and M. Ciavarella

Phys. Rev. E 99, 053005 (2019) - Published 30 May, 2019

Fluid Dynamics

Clusterlike instabilities in bubble-plume-driven flows

Sai Ankit Etha, Anupam Jena, and Rajaram Lakkaraju

Phys. Rev. E 99, 053101 (2019) - Published 1 May, 2019

Effects of the Atwood number on the Richtmyer-Meshkov instability in elastic-plastic media

Qian Chen, Li Li, Yousheng Zhang, and Baolin Tian

Phys. Rev. E 99, 053102 (2019) - Published 6 May, 2019

Regime transition in the energy cascade of rotating turbulence

T. Pestana and S. Hickel

Phys. Rev. E 99, 053103 (2019) - Published 8 May, 2019

Rayleigh-Taylor-instability experiments with elastic-plastic materials

Rinosh Polavarapu, Pamela Roach, and Arindam Banerjee

Phys. Rev. E 99, 053104 (2019) - Published 8 May, 2019

Orthogonal wavelet multiresolution analysis of the turbulent boundary layer measured with two-dimensional time-resolved particle image velocimetry

Guosheng He, Jinjun Wang, and Akira Rinoshika

Phys. Rev. E 99, 053105 (2019) - Published 9 May, 2019

Nonlinear dynamics of two coupled bubbles oscillating inside a liquid-filled cavity surrounded by an elastic medium

Alexander A. Doinikov, Diane Bienaimé, S. Roberto Gonzalez-Avila, Claus-Dieter Ohl, and Philippe Marmottant

Phys. Rev. E 99, 053106 (2019) - Published 9 May, 2019

Propulsion by stiff elastic filaments in viscous fluids

Panayiota Katsamba and Eric Lauga

Phys. Rev. E 99, 053107 (2019) - Published 13 May, 2019

Normal and oblique droplet impingement dynamics on moving dry walls

K. Ashoke Raman

Phys. Rev. E 99, 053108 (2019) - Published 13 May, 2019

Effect of finite amplitude of bottom corrugations on Fabry-Perot resonance of water waves

Jie Zhang and Michel Benoit

Phys. Rev. E 99, 053109 (2019) - Published 15 May, 2019

Faraday waves over a permeable rough substrate

Diego Barba Maggi, Alejandro Boschan, Roman Martino, Marcelo Piva, and Jean-Christophe Géminard

Phys. Rev. E 99, 053110 (2019) - Published 15 May, 2019

Numerical simulation of flow over a parallel cantilevered flag in the vicinity of a rigid wall

Li Wang and Fang-bao Tian

Phys. Rev. E 99, 053111 (2019) - Published 16 May, 2019

Discontinuity in the sedimentation system with two particles having different densities in a vertical channel

Deming Nie and Jianzhong Lin

Phys. Rev. E 99, 053112 (2019) - Published 20 May, 2019

Artificial neural network approach to large-eddy simulation of compressible isotropic turbulence

Chenyue Xie, Jianchun Wang, Ke Li, and Chao Ma

Phys. Rev. E 99, 053113 (2019) - Published 21 May, 2019

Local estimates of Hölder exponents in turbulent vector fields

F. Nguyen, J.-P. Laval, P. Kestener, A. Cheskidov, R. Shvydkoy, and B. Dubrulle

Phys. Rev. E 99, 053114 (2019) - Published 21 May, 2019

Asymmetric time-cross-correlation of nonequilibrium concentration fluctuations in a ternary liquid mixture

Doriano Brogioli, Fabrizio Croccolo, and Alberto Vailati

Phys. Rev. E 99, 053115 (2019) - Published 23 May, 2019

Rapidly rotating Rayleigh-Bénard convection with a tilted axis

L. Novi, J. von Hardenberg, D. W. Hughes, A. Provenzale, and E. A. Spiegel

Phys. Rev. E 99, 053116 (2019) - Published 28 May, 2019

Plasma Physics

Pressure in warm and hot dense matter using the average-atom model

Gérald Faussurier and Christophe Blancard

Phys. Rev. E 99, 053201 (2019) - Published 3 May, 2019

Local approach to the study of energy transfers in incompressible magnetohydrodynamic turbulence

Denis Kuzzay, Olga Alexandrova, and Lorenzo Matteini

Phys. Rev. E 99, 053202 (2019) - Published 9 May, 2019

Dynamical structure factor of strongly coupled ions in a dense quantum plasma

Zh. A. Moldabekov, H. Kählert, T. Dornheim, S. Groth, M. Bonitz, and T. S. Ramazanov

Phys. Rev. E 99, 053203 (2019) - Published 10 May, 2019

Diamagnetic field states in cosmological plasmas

Felipe A. Asenjo and Swadesh M. Mahajan

Phys. Rev. E 99, 053204 (2019) - Published 13 May, 2019

Thomson scattering from dense inhomogeneous plasmas

T.-N. Beuermann, R. Redmer, and Th. Bornath

Phys. Rev. E 99, 053205 (2019) - Published 13 May, 2019

Ion friction at small values of the Coulomb logarithm

Tucker Sprenkle, Adam Dodson, Emma McKnight, Ross Spencer, Scott Bergeson, Abdourahmane Diaw, and Michael S. Murillo

Phys. Rev. E 99, 053206 (2019) - Published 21 May, 2019

Interpretation of proton radiography experiments of hohlraums with three-dimensional simulations

P.-E. Masson-Laborde, S. Laffite, C. K. Li, S. C. Wilks, R. Riquier, R. D. Petrasso, G. Kluth, and V. Tassin

Phys. Rev. E 99, 053207 (2019) - Published 28 May, 2019

Time intermittency in nondiffusive transport regimes of suprathermal ions in turbulent plasmas

F. Manke, M. Baquero-Ruiz, I. Furno, O. Chellaï, A. Fasoli, and P. Ricci

Phys. Rev. E 99, 053208 (2019) - Published 29 May, 2019

Transverse instability magnetic field thresholds of electron phase-space holes

I. H. Hutchinson

Phys. Rev. E 99, 053209 (2019) - Published 30 May, 2019

Theory of a cavity around a large floating sphere in complex (dusty) plasma

Sergey Khrapak, Peter Huber, Hubertus Thomas, Vadim Naumkin, Vladimir Molotkov, and Andrey Lipaev

Phys. Rev. E 99, 053210 (2019) - Published 31 May, 2019

Computational Physics

Generalized lattice Boltzmann model for frosting

Timan Lei, Kai H. Luo, and Duan Wu

Phys. Rev. E 99, 053301 (2019) - Published 1 May, 2019

Separate-phase model and its lattice Boltzmann algorithm for liquid-vapor two-phase flows in porous media

Shurong Lei and Yong Shi

Phys. Rev. E 99, 053302 (2019) - Published 2 May, 2019

Hybrid Monte Carlo algorithm for sampling rare events in space-time histories of stochastic fields

G. Margazoglou, L. Biferale, R. Grauer, K. Jansen, D. Mesterházy, T. Rosenow, and R. Tripiccione

Phys. Rev. E 99, 053303 (2019) - Published 7 May, 2019

Diffuse-interface immersed-boundary framework for conjugate-heat-transfer problems

Mukesh Kumar and Ganesh Natarajan

Phys. Rev. E 99, 053304 (2019) - Published 7 May, 2019

Hydrodynamic behavior of the pseudopotential lattice Boltzmann method for interfacial flows

Daniele Chiappini, Mauro Sbragaglia, Xiao Xue, and Giacomo Falcucci

Phys. Rev. E 99, 053305 (2019) - Published 17 May, 2019

Tricoupled hybrid lattice Boltzmann model for nonisothermal drying of colloidal suspensions in micropore structures

Feifei Qin, Ali Mazloomi Moqaddam, Luca Del Carro, Qinjun Kang, Thomas Brunschwiler, Dominique Derome, and Jan Carmeliet

Phys. Rev. E 99, 053306 (2019) - Published 23 May, 2019

Control-oriented model of dielectrophoresis and electrorotation for arbitrarily shaped objects

Tomáš Michálek, Aude Bolopion, Zdeněk Hurák, and Michaël Gauthier

Phys. Rev. E 99, 053307 (2019) - Published 24 May, 2019

Neutral objects, such as cells and nanoparticles, can move in the presence of an inhomogeneous electric field. Modeling this phenomenon, commonly known as dielectrophoresis, requires several approximations. The authors here propose an efficient method to overcome some of the limitations of an existing technique known as effective multipole method, and validate their method against reference numerical solutions.

Relative entropy indicates an ideal concentration for structure-based coarse graining of binary mixtures

David Rosenberger and Nico F. A. van der Vegt

Phys. Rev. E 99, 053308 (2019) - Published 28 May, 2019

Structure-preserving strategy for conservative simulation of the relativistic nonlinear Landau-Fokker-Planck equation

Takashi Shiroto and Yasuhiko Sentoku

Phys. Rev. E 99, 053309 (2019) - Published 28 May, 2019

Correlation-driven direct sampling method for geostatistical simulation and training image evaluation

Chen Zuo, Zhibin Pan, Zhaoqi Gao, and Jinghuai Gao

Phys. Rev. E 99, 053310 (2019) - Published 29 May, 2019

Randomization algorithms for large sparse networks

Kai Puolamäki, Andreas Henelius, and Antti Ukkonen

Phys. Rev. E 99, 053311 (2019) - Published 30 May, 2019

COMMENTS

Comment on “Thermal transport in dimerized harmonic lattices: Exact solution, crossover behavior, and extended reservoirs”

Milica Anđelić and Carlos M. da Fonseca

Phys. Rev. E 99, 056101 (2019) - Published 30 May, 2019

ERRATA

Erratum: Size effects in long-term quasistatic heat transport [Phys. Rev. E 87, 062118 (2013)]

George Y. Panasyuk and Kirk L. Yerkes

Phys. Rev. E 99, 059902 (2019) - Published 13 May, 2019

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