Volume 93, Issue 3

March 2016

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Noise-enhanced coupling between two oscillators with long-term plasticity

Leonhard Lücken, Oleksandr V. Popovych, Peter A. Tass, and Serhiy Yanchuk

Phys. Rev. E 93, 032210 (2016) - Published 8 March, 2016

The authors address the plasticity of the coupling between neurons subjected to stochastic excitations. By reducing the problem to a system of two neurons, they show the onset of new states that do not appear in deterministic models. Interestingly, they find that noise could act to stabilize the coupling and enhance synchronization.

EDITORS' SUGGESTION

Constrained growth of complex scale-independent systems

Laurent Hébert-Dufresne, Antoine Allard, Jean-Gabriel Young, and Louis J. Dubé

Phys. Rev. E 93, 032304 (2016) - Published 3 March, 2016

Scale-free distributions of resources arise in very diverse systems, such as in the distribution of wealth or of the population of cities. By coupling the overall population growth with the individual growth in resources, the authors propose a model describing the emergence of such behavior. Through this model, the authors introduce a method to reconstruct the past or forecast the future from a snapshot of data.

EDITORS' SUGGESTION

Growth, collapse, and stalling in a mechanical model for neurite motility

Pierre Recho, Antoine Jerusalem, and Alain Goriely

Phys. Rev. E 93, 032410 (2016) - Published 18 March, 2016

This paper presents a mechanical model of neurite motility. By relying on the cytoskeletal architecture of the neurite, the model accounts for the three observed experimental states, namely collapsed, static, and motile. It also explains known results from drug treatments and suggests future experimental tests on neuronal regeneration.

EDITORS' SUGGESTION

Sensing and tuning microfiber chirality with nematic chirogyral effect

Simon Čopar, David Seč, Luis E. Aguirre, Pedro L. Almeida, Mallory Dazza, Miha Ravnik, Maria H. Godinho, Pawel Pieranski, and Slobodan Žumer

Phys. Rev. E 93, 032703 (2016) - Published 15 March, 2016

The authors use polarized optical microscopy to investigate director field structure around fibers immersed in a nematic medium. They demonstrate coupling between chirality of the fibers and mechanical response of tilted defect rings between domains of nematic molecules aligned along the fibers.

EDITORS' SUGGESTION

Echoes from anharmonic normal modes in model glasses

Justin C. Burton and Sidney R. Nagel

Phys. Rev. E 93, 032905 (2016) - Published 25 March, 2016

This paper addresses the onset of phonon echoes in glassy materials using arguments from classical physics. Using computer simulations of disordered materials quenched at zero temperature, the authors conclude that these echoes can be caused by the large anharmonicity of quasilocalized, low-frequency classical vibrational modes.

EDITORS' SUGGESTION

Rotation of melting ice disks due to melt fluid flow

S. Dorbolo, N. Adami, C. Dubois, H. Caps, N. Vandewalle, and B. Darbois-Texier

Phys. Rev. E 93, 033112 (2016) - Published 14 March, 2016

In this paper the authors aim to explain the spontaneous rotation of melting ice bodies floating on the surface of water. As the liquid is cooled down by the ice, the elements of fluid closest to the interface reach 4 $^{o}$ C, the point of maximum density, and settle, creating a downward flow that results in a vertical vortex that sets the ice body in rotational motion. The authors recreate the phenomenon successfully in the lab.

RAPID COMMUNICATIONS

Nonlinear Dynamics and Chaos

RAPID COMMUNICATION

Signal prediction by anticipatory relaxation dynamics

Henning U. Voss

Phys. Rev. E 93, 030201(R) (2016) - Published 30 March, 2016

Networks and Complex Systems

RAPID COMMUNICATION

Maximizing algebraic connectivity in interconnected networks

Heman Shakeri, Nathan Albin, Faryad Darabi Sahneh, Pietro Poggi-Corradini, and Caterina Scoglio

Phys. Rev. E 93, 030301(R) (2016) - Published 21 March, 2016

RAPID COMMUNICATION

Beyond the locally treelike approximation for percolation on real networks

Filippo Radicchi and Claudio Castellano

Phys. Rev. E 93, 030302(R) (2016) - Published 23 March, 2016

Colloids, Complex Fluids, and Active Matter

RAPID COMMUNICATION

Reentrant network formation in patchy colloidal mixtures under gravity

Daniel de las Heras, Lucas L. Treffenstädt, and Matthias Schmidt

Phys. Rev. E 93, 030601(R) (2016) - Published 1 March, 2016

Liquid Crystals

RAPID COMMUNICATION

Flow-induced delayed Freedericksz transition

N. J. Mottram, G. McKay, C. V. Brown, C. T. Russell, I. C. Sage, and C. Tsakonas

Phys. Rev. E 93, 030701(R) (2016) - Published 15 March, 2016

Granular Materials

RAPID COMMUNICATION

Rheological chaos of frictional grains

Matthias Grob, Annette Zippelius, and Claus Heussinger

Phys. Rev. E 93, 030901(R) (2016) - Published 14 March, 2016

RAPID COMMUNICATION

Granular flow regimes in rotating drums from depth-integrated theory

C.-Y. Hung, C. P. Stark, and H. Capart

Phys. Rev. E 93, 030902(R) (2016) - Published 28 March, 2016

Fluid Dynamics

RAPID COMMUNICATION

Tricritical spiral vortex instability in cross-slot flow

Simon J. Haward, Robert J. Poole, Manuel A. Alves, Paulo J. Oliveira, Nigel Goldenfeld, and Amy Q. Shen

Phys. Rev. E 93, 031101(R) (2016) - Published 9 March, 2016

RAPID COMMUNICATION

Abrupt growth of large aggregates by correlated coalescences in turbulent flow

Jérémie Bec, Samriddhi Sankar Ray, Ewe Wei Saw, and Holger Homann

Phys. Rev. E 93, 031102(R) (2016) - Published 21 March, 2016

Plasma Physics

RAPID COMMUNICATION

Dust interferometers in plasmas

M. Chaudhuri, V. Nosenko, and H. M. Thomas

Phys. Rev. E 93, 031201(R) (2016) - Published 24 March, 2016

Computational Physics

RAPID COMMUNICATION

Autonomic closure for turbulence simulations

Ryan N. King, Peter E. Hamlington, and Werner J. A. Dahm

Phys. Rev. E 93, 031301(R) (2016) - Published 14 March, 2016

ARTICLES

Statistical Physics

Glasslike behavior of a hard-disk fluid confined to a narrow channel

J. F. Robinson, M. J. Godfrey, and M. A. Moore

Phys. Rev. E 93, 032101 (2016) - Published 1 March, 2016

Cooling by heating: Restoration of the third law of thermodynamics

V. B. Sørdal, J. Bergli, and Y. M. Galperin

Phys. Rev. E 93, 032102 (2016) - Published 2 March, 2016

Thermodynamic inference based on coarse-grained data or noisy measurements

Reinaldo García-García, Sourabh Lahiri, and David Lacoste

Phys. Rev. E 93, 032103 (2016) - Published 3 March, 2016

Eigenstate thermalization in the two-dimensional transverse field Ising model

Rubem Mondaini, Keith R. Fratus, Mark Srednicki, and Marcos Rigol

Phys. Rev. E 93, 032104 (2016) - Published 4 March, 2016

Resonant Anderson localization in segmented wires

Cristian Estarellas and Llorenç Serra

Phys. Rev. E 93, 032105 (2016) - Published 4 March, 2016

Vortex clustering and universal scaling laws in two-dimensional quantum turbulence

Audun Skaugen and Luiza Angheluta

Phys. Rev. E 93, 032106 (2016) - Published 7 March, 2016

Tsallis statistics generalization of nonequilibrium work relations

M. Ponmurugan

Phys. Rev. E 93, 032107 (2016) - Published 7 March, 2016

Lossy chaotic electromagnetic reverberation chambers: Universal statistical behavior of the vectorial field

J.-B. Gros, U. Kuhl, O. Legrand, and F. Mortessagne

Phys. Rev. E 93, 032108 (2016) - Published 7 March, 2016

Extinction of oscillating populations

Naftali R. Smith and Baruch Meerson

Phys. Rev. E 93, 032109 (2016) - Published 7 March, 2016

Polymer models with competing collapse interactions on Husimi and Bethe lattices

M. Pretti

Phys. Rev. E 93, 032110 (2016) - Published 7 March, 2016

Random recursive trees and the elephant random walk

Rüdiger Kürsten

Phys. Rev. E 93, 032111 (2016) - Published 7 March, 2016

Finite-size effects and dynamics of giant transition of a continuum quorum percolation model on random networks

S. Métens, P. Monceau, R. Renault, and S. Bottani

Phys. Rev. E 93, 032112 (2016) - Published 7 March, 2016

Vortex with fourfold defect lines in a simple model of self-propelled particles

Hamid Seyed-Allaei and Mohammad Reza Ejtehadi

Phys. Rev. E 93, 032113 (2016) - Published 8 March, 2016

Role of further-neighbor interactions in modulating the critical behavior of the Ising model with frustration

R. M. Liu, W. Z. Zhuo, S. Dong, X. B. Lu, X. S. Gao, M. H. Qin, and J.-M. Liu

Phys. Rev. E 93, 032114 (2016) - Published 8 March, 2016

Quantum correlations in quenched disordered spin models: Enhanced order from disorder by thermal fluctuations

Debasis Sadhukhan, R. Prabhu, Aditi Sen(De), and Ujjwal Sen

Phys. Rev. E 93, 032115 (2016) - Published 10 March, 2016

Generalized Gibbs ensemble in a nonintegrable system with an extensive number of local symmetries

Ryusuke Hamazaki, Tatsuhiko N. Ikeda, and Masahito Ueda

Phys. Rev. E 93, 032116 (2016) - Published 11 March, 2016

Nonequilibrium fluctuation-induced Casimir pressures in liquid mixtures

T. R. Kirkpatrick, J. M. Ortiz de Zárate, and J. V. Sengers

Phys. Rev. E 93, 032117 (2016) - Published 11 March, 2016

Crossing probability for directed polymers in random media. II. Exact tail of the distribution

Andrea De Luca and Pierre Le Doussal

Phys. Rev. E 93, 032118 (2016) - Published 11 March, 2016

Solution of a generalized Boltzmann's equation for nonequilibrium charged-particle transport via localized and delocalized states

Peter W. Stokes, Bronson Philippa, Daniel Cocks, and Ronald D. White

Phys. Rev. E 93, 032119 (2016) - Published 11 March, 2016

Response of two-band systems to a single-mode quantized field

Z. C. Shi, H. Z. Shen, W. Wang, and X. X. Yi

Phys. Rev. E 93, 032120 (2016) - Published 11 March, 2016

Role of demographic stochasticity in a speciation model with sexual reproduction

Luis F. Lafuerza and Alan J. McKane

Phys. Rev. E 93, 032121 (2016) - Published 11 March, 2016

Fluctuations of the heat exchanged between two quantum spin chains

Gabriel T. Landi and Dragi Karevski

Phys. Rev. E 93, 032122 (2016) - Published 14 March, 2016

Finite-size critical scaling in Ising spin glasses in the mean-field regime

T. Aspelmeier, Helmut G. Katzgraber, Derek Larson, M. A. Moore, Matthew Wittmann, and Joonhyun Yeo

Phys. Rev. E 93, 032123 (2016) - Published 14 March, 2016

Subpicosecond energy transfer from a highly intense THz pulse to water: A computational study based on the TIP4P/2005 rigid-water-molecule model

Pankaj Kr. Mishra, Oriol Vendrell, and Robin Santra

Phys. Rev. E 93, 032124 (2016) - Published 14 March, 2016

Efficiency at maximum power of thermochemical engines with near-independent particles

Xiaoguang Luo, Nian Liu, and Teng Qiu

Phys. Rev. E 93, 032125 (2016) - Published 15 March, 2016

Out-of-equilibrium finite-size method for critical behavior analyses

Matteo Lulli, Giorgio Parisi, and Andrea Pelissetto

Phys. Rev. E 93, 032126 (2016) - Published 15 March, 2016

Thermal rectification and negative differential thermal conductance in harmonic chains with nonlinear system-bath coupling

Yi Ming (明燚), Hui-Min Li (李会民), and Ze-Jun Ding (丁泽军)

Phys. Rev. E 93, 032127 (2016) - Published 15 March, 2016

Nonlinear response and emerging nonequilibrium microstructures for biased diffusion in confined crowded environments

O. Bénichou, P. Illien, G. Oshanin, A. Sarracino, and R. Voituriez

Phys. Rev. E 93, 032128 (2016) - Published 15 March, 2016

Emergence of cooperative dynamics in fully packed classical dimers

Tom Oakes, Juan P. Garrahan, and Stephen Powell

Phys. Rev. E 93, 032129 (2016) - Published 16 March, 2016

Stretch diffusion and heat conduction in one-dimensional nonlinear lattices

Zhibin Gao, Nianbei Li, and Baowen Li

Phys. Rev. E 93, 032130 (2016) - Published 16 March, 2016

Kinetic approach to a relativistic Bose-Einstein condensate

Alex Meistrenko, Hendrik van Hees, Kai Zhou, and Carsten Greiner

Phys. Rev. E 93, 032131 (2016) - Published 16 March, 2016

Nature of phase transitions in Axelrod-like coupled Potts models in two dimensions

Yerali Gandica and Silvia Chiacchiera

Phys. Rev. E 93, 032132 (2016) - Published 17 March, 2016

Radiation influence on the temperature-dependent parameters of fluids

L. A. Bulavin, K. V. Cherevko, D. A. Gavryushenko, V. M. Sysoev, and T. S. Vlasenko

Phys. Rev. E 93, 032133 (2016) - Published 17 March, 2016

Local structure of current fluctuations in diffusive systems beyond one dimension

Rodrigo Villavicencio-Sanchez and Rosemary J. Harris

Phys. Rev. E 93, 032134 (2016) - Published 17 March, 2016

From empirical data to time-inhomogeneous continuous Markov processes

Pedro Lencastre, Frank Raischel, Tim Rogers, and Pedro G. Lind

Phys. Rev. E 93, 032135 (2016) - Published 17 March, 2016

Optimal efficiency of quantum transport in a disordered trimer

Giulio G. Giusteri, G. Luca Celardo, and Fausto Borgonovi

Phys. Rev. E 93, 032136 (2016) - Published 21 March, 2016

Towards a critical transition theory under different temporal scales and noise strengths

Jifan Shi, Tiejun Li, and Luonan Chen

Phys. Rev. E 93, 032137 (2016) - Published 21 March, 2016

Transition matrix model for evolutionary game dynamics

G. Bard Ermentrout, Christopher Griffin, and Andrew Belmonte

Phys. Rev. E 93, 032138 (2016) - Published 21 March, 2016

Fractality in persistence decay and domain growth during ferromagnetic ordering: Dependence upon initial correlation

Saikat Chakraborty and Subir K. Das

Phys. Rev. E 93, 032139 (2016) - Published 22 March, 2016

Variance-reduced estimator of the connected two-point function in the presence of a broken $Z_{2}$ -symmetry

Martin Hasenbusch

Phys. Rev. E 93, 032140 (2016) - Published 23 March, 2016

Off-equilibrium scaling behaviors driven by time-dependent external fields in three-dimensional $O (N)$ vector models

Andrea Pelissetto and Ettore Vicari

Phys. Rev. E 93, 032141 (2016) - Published 24 March, 2016

Fluctuation-dissipation and energy properties of a finite bath

A. Carcaterra and A. Akay

Phys. Rev. E 93, 032142 (2016) - Published 25 March, 2016

Spatiotemporal generalization of the Harris criterion and its application to diffusive disorder

Thomas Vojta and Ronald Dickman

Phys. Rev. E 93, 032143 (2016) - Published 25 March, 2016

Non-Gaussian normal diffusion induced by delocalization

Jianjin Wang, Yong Zhang, and Hong Zhao

Phys. Rev. E 93, 032144 (2016) - Published 28 March, 2016

$H$ theorem for generalized entropic forms within a master-equation framework

Gabriela A. Casas, Fernando D. Nobre, and Evaldo M. F. Curado

Phys. Rev. E 93, 032145 (2016) - Published 28 March, 2016

Optimal tuning of a confined Brownian information engine

Jong-Min Park, Jae Sung Lee, and Jae Dong Noh

Phys. Rev. E 93, 032146 (2016) - Published 28 March, 2016

Thermodynamics of information exchange between two coupled quantum dots

Aki Kutvonen, Takahiro Sagawa, and Tapio Ala-Nissila

Phys. Rev. E 93, 032147 (2016) - Published 28 March, 2016

Semiphenomenological model for gas-liquid phase transitions

E. S. Benilov and M. S. Benilov

Phys. Rev. E 93, 032148 (2016) - Published 30 March, 2016

In defense of negative temperature

J. Poulter

Phys. Rev. E 93, 032149 (2016) - Published 30 March, 2016

Nonisothermal fluctuating hydrodynamics and Brownian motion

G. Falasco and K. Kroy

Phys. Rev. E 93, 032150 (2016) - Published 30 March, 2016

Tempered fractional Feynman-Kac equation: Theory and examples

Xiaochao Wu, Weihua Deng, and Eli Barkai

Phys. Rev. E 93, 032151 (2016) - Published 31 March, 2016

Universality of efficiency at unified trade-off optimization

Yanchao Zhang, Chuankun Huang, Guoxing Lin, and Jincan Chen

Phys. Rev. E 93, 032152 (2016) - Published 31 March, 2016

Nonlinear Dynamics and Chaos

Rogue waves of the Kundu-Eckhaus equation in a chaotic wave field

Cihan Bayindir

Phys. Rev. E 93, 032201 (2016) - Published 1 March, 2016

Marginal chimera state at cross-frequency locking of pulse-coupled neural networks

M. I. Bolotov, G. V. Osipov, and A. Pikovsky

Phys. Rev. E 93, 032202 (2016) - Published 2 March, 2016

Transient dynamics of pulse-coupled oscillators with nonlinear charging curves

Kevin P. O'Keeffe

Phys. Rev. E 93, 032203 (2016) - Published 4 March, 2016

Stationary waves on nonlinear quantum graphs: General framework and canonical perturbation theory

Sven Gnutzmann and Daniel Waltner

Phys. Rev. E 93, 032204 (2016) - Published 4 March, 2016

Transport of localized and extended excitations in chains embedded with randomly distributed linear and nonlinear $n$ -mers

Dany López-González and Mario I. Molina

Phys. Rev. E 93, 032205 (2016) - Published 7 March, 2016

Complexity and bandwidth enhancement in unidirectionally coupled semiconductor lasers with time-delayed optical feedback

Kazutaka Kanno, Atsushi Uchida, and Masatoshi Bunsen

Phys. Rev. E 93, 032206 (2016) - Published 7 March, 2016

Highly ordered square arrays of nanoscale pyramids produced by ion bombardment of a crystalline binary material

Bahaudin Hashmi, Patrick D. Shipman, and R. Mark Bradley

Phys. Rev. E 93, 032207 (2016) - Published 7 March, 2016

Statistics of Lyapunov exponent spectrum in randomly coupled Kuramoto oscillators

Soumen K. Patra and Anandamohan Ghosh

Phys. Rev. E 93, 032208 (2016) - Published 7 March, 2016

Parametric spatiotemporal oscillation in reaction-diffusion systems

Shyamolina Ghosh and Deb Shankar Ray

Phys. Rev. E 93, 032209 (2016) - Published 7 March, 2016

EDITORS' SUGGESTION

Noise-enhanced coupling between two oscillators with long-term plasticity

Leonhard Lücken, Oleksandr V. Popovych, Peter A. Tass, and Serhiy Yanchuk

Phys. Rev. E 93, 032210 (2016) - Published 8 March, 2016

Diffusive instabilities in hyperbolic reaction-diffusion equations

Evgeny P. Zemskov and Werner Horsthemke

Phys. Rev. E 93, 032211 (2016) - Published 10 March, 2016

Manipulating localized matter waves in multicomponent Bose-Einstein condensates

K. Manikandan, P. Muruganandam, M. Senthilvelan, and M. Lakshmanan

Phys. Rev. E 93, 032212 (2016) - Published 10 March, 2016

Superlinearly scalable noise robustness of redundant coupled dynamical systems

Vivek Kohar, Behnam Kia, John F. Lindner, and William L. Ditto

Phys. Rev. E 93, 032213 (2016) - Published 11 March, 2016

Arnold diffusion in a driven optical lattice

Yingyue Boretz and L. E. Reichl

Phys. Rev. E 93, 032214 (2016) - Published 11 March, 2016

W-shaped solitons generated from a weak modulation in the Sasa-Satsuma equation

Li-Chen Zhao, Sheng-Chang Li, and Liming Ling

Phys. Rev. E 93, 032215 (2016) - Published 14 March, 2016

Accelerating oscillatory fronts in a nonlinear sonic vacuum with strong nonlocal effects

O. V. Gendelman, V. Zolotarevskiy, A. V. Savin, L. A. Bergman, and A. F. Vakakis

Phys. Rev. E 93, 032216 (2016) - Published 15 March, 2016

Parametric number covariance in quantum chaotic spectra

Vinayak, Sandeep Kumar, and Akhilesh Pandey

Phys. Rev. E 93, 032217 (2016) - Published 17 March, 2016

Localized nonlinear waves on quantized superfluid vortex filaments in the presence of mutual friction and a driving normal fluid flow

Rehan Shah and Robert A. Van Gorder

Phys. Rev. E 93, 032218 (2016) - Published 22 March, 2016

Dynamical phase diagram of Gaussian wave packets in optical lattices

H. Hennig, T. Neff, and R. Fleischmann

Phys. Rev. E 93, 032219 (2016) - Published 22 March, 2016

Coexistence of intermittencies in the neuronal network of the epileptic brain

Alexey A. Koronovskii, Alexander E. Hramov, Vadim V. Grubov, Olga I. Moskalenko, Evgenia Sitnikova, and Alexey N. Pavlov

Phys. Rev. E 93, 032220 (2016) - Published 23 March, 2016

Dark solitons in laser radiation build-up dynamics

R. I. Woodward and E. J. R. Kelleher

Phys. Rev. E 93, 032221 (2016) - Published 29 March, 2016

Linear stability and the Braess paradox in coupled-oscillator networks and electric power grids

Tommaso Coletta and Philippe Jacquod

Phys. Rev. E 93, 032222 (2016) - Published 31 March, 2016

Networks and Complex Systems

Locating the source of diffusion in complex networks by time-reversal backward spreading

Zhesi Shen, Shinan Cao, Wen-Xu Wang, Zengru Di, and H. Eugene Stanley

Phys. Rev. E 93, 032301 (2016) - Published 2 March, 2016

Multiplex networks with heterogeneous activities of the nodes

Davide Cellai and Ginestra Bianconi

Phys. Rev. E 93, 032302 (2016) - Published 2 March, 2016

Conflicting attachment and the growth of bipartite networks

Chung Yin (Joey) Leung and Joshua S. Weitz

Phys. Rev. E 93, 032303 (2016) - Published 2 March, 2016

EDITORS' SUGGESTION

Constrained growth of complex scale-independent systems

Laurent Hébert-Dufresne, Antoine Allard, Jean-Gabriel Young, and Louis J. Dubé

Phys. Rev. E 93, 032304 (2016) - Published 3 March, 2016

Competing opinions and stubborness: Connecting models to data

Keith Burghardt, William Rand, and Michelle Girvan

Phys. Rev. E 93, 032305 (2016) - Published 3 March, 2016

Zipf's law from scale-free geometry

Henry W. Lin and Abraham Loeb

Phys. Rev. E 93, 032306 (2016) - Published 7 March, 2016

Collective motion patterns of swarms with delay coupling: Theory and experiment

Klementyna Szwaykowska, Ira B. Schwartz, Luis Mier-y-Teran Romero, Christoffer R. Heckman, Dan Mox, and M. Ani Hsieh

Phys. Rev. E 93, 032307 (2016) - Published 7 March, 2016

Contagion processes on the static and activity-driven coupling networks

Yanjun Lei, Xin Jiang, Quantong Guo, Yifang Ma, Meng Li, and Zhiming Zheng

Phys. Rev. E 93, 032308 (2016) - Published 8 March, 2016

Efficient community detection of network flows for varying Markov times and bipartite networks

Masoumeh Kheirkhahzadeh, Andrea Lancichinetti, and Martin Rosvall

Phys. Rev. E 93, 032309 (2016) - Published 9 March, 2016

Scale-invariant geometric random graphs

Zheng Xie and Tim Rogers

Phys. Rev. E 93, 032310 (2016) - Published 9 March, 2016

Evacuation time estimate for total pedestrian evacuation using a queuing network model and volunteered geographic information

Bharat Kunwar, Filippo Simini, and Anders Johansson

Phys. Rev. E 93, 032311 (2016) - Published 10 March, 2016

Role of structural holes in containing spreading processes

Ping Li, Xian Sun, Kai Zhang, Jie Zhang, and Jürgen Kurths

Phys. Rev. E 93, 032312 (2016) - Published 11 March, 2016

Random geometric graphs with general connection functions

Carl P. Dettmann and Orestis Georgiou

Phys. Rev. E 93, 032313 (2016) - Published 14 March, 2016

Collective versus hub activation of epidemic phases on networks

Silvio C. Ferreira, Renan S. Sander, and Romualdo Pastor-Satorras

Phys. Rev. E 93, 032314 (2016) - Published 14 March, 2016

Network geometry with flavor: From complexity to quantum geometry

Ginestra Bianconi and Christoph Rahmede

Phys. Rev. E 93, 032315 (2016) - Published 14 March, 2016

Explosive percolation transitions in growing networks

S. M. Oh, S.-W. Son, and B. Kahng

Phys. Rev. E 93, 032316 (2016) - Published 17 March, 2016

Multiple-scale theory of topology-driven patterns on directed networks

Silvia Contemori, Francesca Di Patti, Duccio Fanelli, and Filippo Miele

Phys. Rev. E 93, 032317 (2016) - Published 17 March, 2016

Solution of the multistate voter model and application to strong neutrals in the naming game

William Pickering and Chjan Lim

Phys. Rev. E 93, 032318 (2016) - Published 21 March, 2016

Fluctuations in complex networks with variable dimensionality and heterogeneity

H.-H. Yoo and D.-S. Lee

Phys. Rev. E 93, 032319 (2016) - Published 23 March, 2016

Fostering cooperation of selfish agents through public goods in relation to the loners

Jianlei Zhang, Zengqiang Chen, and Zhongxin Liu

Phys. Rev. E 93, 032320 (2016) - Published 25 March, 2016

Optimal transport in time-varying small-world networks

Qu Chen, Jiang-Hai Qian, Liang Zhu, and Ding-Ding Han

Phys. Rev. E 93, 032321 (2016) - Published 25 March, 2016

Griffiths effects of the susceptible-infected-susceptible epidemic model on random power-law networks

Wesley Cota, Silvio C. Ferreira, and Géza Ódor

Phys. Rev. E 93, 032322 (2016) - Published 28 March, 2016

Constructing networks from a dynamical system perspective for multivariate nonlinear time series

Tomomichi Nakamura, Toshihiro Tanizawa, and Michael Small

Phys. Rev. E 93, 032323 (2016) - Published 28 March, 2016

Outbreaks in susceptible-infected-removed epidemics with multiple seeds

Takehisa Hasegawa and Koji Nemoto

Phys. Rev. E 93, 032324 (2016) - Published 30 March, 2016

Biological Physics

NMR-based diffusion lattice imaging

Frederik Bernd Laun, Lars Müller, and Tristan Anselm Kuder

Phys. Rev. E 93, 032401 (2016) - Published 7 March, 2016

Upward swimming of a sperm cell in shear flow

Toshihiro Omori and Takuji Ishikawa

Phys. Rev. E 93, 032402 (2016) - Published 8 March, 2016

Universality classes of foraging with resource renewal

M. Chupeau, O. Bénichou, and S. Redner

Phys. Rev. E 93, 032403 (2016) - Published 8 March, 2016

Anticipating regime shifts in gene expression: The case of an autoactivating positive feedback loop

Yogita Sharma, Partha Sharathi Dutta, and A. K. Gupta

Phys. Rev. E 93, 032404 (2016) - Published 9 March, 2016

Equilibrium self-assembly of small RNA viruses

R. F. Bruinsma, M. Comas-Garcia, R. F. Garmann, and A. Y. Grosberg

Phys. Rev. E 93, 032405 (2016) - Published 9 March, 2016

Free-energy landscape of mono- and dinucleosomes: Enhanced rotational flexibility of interconnected nucleosomes

Gi-Moon Nam and Gaurav Arya

Phys. Rev. E 93, 032406 (2016) - Published 10 March, 2016

Coherent chemical kinetics as quantum walks. I. Reaction operators for radical pairs

A. Chia, K. C. Tan, Ł. Pawela, P. Kurzyński, T. Paterek, and D. Kaszlikowski

Phys. Rev. E 93, 032407 (2016) - Published 10 March, 2016

Coherent chemical kinetics as quantum walks. II. Radical-pair reactions in Arabidopsis thaliana

A. Chia, A. Górecka, P. Kurzyński, T. Paterek, and D. Kaszlikowski

Phys. Rev. E 93, 032408 (2016) - Published 10 March, 2016

Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example

Jin Dai, Antti J. Niemi, Jianfeng He, Adam Sieradzan, and Nevena Ilieva

Phys. Rev. E 93, 032409 (2016) - Published 16 March, 2016

EDITORS' SUGGESTION

Growth, collapse, and stalling in a mechanical model for neurite motility

Pierre Recho, Antoine Jerusalem, and Alain Goriely

Phys. Rev. E 93, 032410 (2016) - Published 18 March, 2016

Tension-compression asymmetry in the binding affinity of membrane-anchored receptors and ligands

Guang-Kui Xu, Zishun Liu, Xi-Qiao Feng, and Huajian Gao

Phys. Rev. E 93, 032411 (2016) - Published 18 March, 2016

Nonlinear reconstruction of single-molecule free-energy surfaces from univariate time series

Jiang Wang and Andrew L. Ferguson

Phys. Rev. E 93, 032412 (2016) - Published 21 March, 2016

Hamiltonian dynamics for complex food webs

Vladimir Kozlov, Sergey Vakulenko, and Uno Wennergren

Phys. Rev. E 93, 032413 (2016) - Published 21 March, 2016

Impact of dispersed coupling strength on the free running periods of circadian rhythms

Changgui Gu, Jos H. T. Rohling, Xiaoming Liang, and Huijie Yang

Phys. Rev. E 93, 032414 (2016) - Published 23 March, 2016

Random close packing in protein cores

Jennifer C. Gaines, W. Wendell Smith, Lynne Regan, and Corey S. O'Hern

Phys. Rev. E 93, 032415 (2016) - Published 28 March, 2016

Polymers

Effects of shape and flexibility of conductive fillers in nanocomposites on percolating network formation and electrical conductivity

Seulki Kwon, Hyun Woo Cho, Gyemin Gwon, Heesuk Kim, and Bong June Sung

Phys. Rev. E 93, 032501 (2016) - Published 1 March, 2016

Dynamics of comb-of-comb networks

Hongxiao Liu, Yuan Lin, Maxim Dolgushev, and Zhongzhi Zhang

Phys. Rev. E 93, 032502 (2016) - Published 7 March, 2016

Optimal size for emergence of self-replicating polymer system

Yoshiya J. Matsubara and Kunihiko Kaneko

Phys. Rev. E 93, 032503 (2016) - Published 7 March, 2016

Influence of substrate interaction and confinement on electric-field-induced transition in symmetric block-copolymer thin films

Arnab Mukherjee, Rajdip Mukherjee, Kumar Ankit, Avisor Bhattacharya, and Britta Nestler

Phys. Rev. E 93, 032504 (2016) - Published 11 March, 2016

Generation of mechanical force by grafted polyelectrolytes in an electric field

N. V. Brilliantov, Yu. A. Budkov, and C. Seidel

Phys. Rev. E 93, 032505 (2016) - Published 16 March, 2016

Evidence of aging and dynamic scaling in the collapse of a polymer

Suman Majumder and Wolfhard Janke

Phys. Rev. E 93, 032506 (2016) - Published 28 March, 2016

Near-second-order transition in confined living-polymer solutions

Alexander V. Korobko and Nicolaas A. M. Besseling

Phys. Rev. E 93, 032507 (2016) - Published 28 March, 2016

Coarse-grained simulations of an active filament propelled by a self-generated solute gradient

Debarati Sarkar and Snigdha Thakur

Phys. Rev. E 93, 032508 (2016) - Published 30 March, 2016

Torque-winding interdependence for a flexible polymer chain wound around a cylinder in the presence of obstacles

Boris P. Belotserkovskii

Phys. Rev. E 93, 032509 (2016) - Published 30 March, 2016

Colloids, Complex Fluids, and Active Matter

Random-diluted triangular plaquette model: Study of phase transitions in a kinetically constrained model

Silvio Franz, Giacomo Gradenigo, and Stefano Spigler

Phys. Rev. E 93, 032601 (2016) - Published 3 March, 2016

Steady and transient states in low-energy swarms: Stability and first-passage times

Amara A. Al Sayegh, Leonid Klushin, and Jihad Touma

Phys. Rev. E 93, 032602 (2016) - Published 3 March, 2016

Dynamic evolution process of multilayer core-shell microstructures within containerlessly solidifying $F e_{50} S n_{50}$ immiscible alloy

W. L. Wang, Y. H. Wu, L. H. Li, D. L. Geng, and B. Wei

Phys. Rev. E 93, 032603 (2016) - Published 7 March, 2016

From local to hydrodynamic friction in Brownian motion: A multiparticle collision dynamics simulation study

Mario Theers, Elmar Westphal, Gerhard Gompper, and Roland G. Winkler

Phys. Rev. E 93, 032604 (2016) - Published 8 March, 2016

Pressure of a gas of underdamped active dumbbells

Marc Joyeux and Eric Bertin

Phys. Rev. E 93, 032605 (2016) - Published 10 March, 2016

Graphoepitaxy for translational and orientational ordering of monolayers of rectangular nanoparticles

Mark E. Ferraro, Thomas M. Truskett, and Roger T. Bonnecaze

Phys. Rev. E 93, 032606 (2016) - Published 11 March, 2016

Dense bubble traffic in microfluidic loops: Selection rules and clogging

Virginie Hourtane, Hugues Bodiguel, and Annie Colin

Phys. Rev. E 93, 032607 (2016) - Published 15 March, 2016

Retardation and flow at the glass transition

U. Buchenau

Phys. Rev. E 93, 032608 (2016) - Published 17 March, 2016

Structure-rheology relationship in a sheared lamellar fluid

S. J. Jaju and V. Kumaran

Phys. Rev. E 93, 032609 (2016) - Published 22 March, 2016

Shearing a glass and the role of pinning delay in models of interface depinning

Stefanos Papanikolaou

Phys. Rev. E 93, 032610 (2016) - Published 24 March, 2016

Synchronized diffusive-wave spectroscopy: Principle and application to sound propagation in aqueous foams

Jérôme Crassous, Patrick Chasle, Juliette Pierre, Arnaud Saint-Jalmes, and Benjamin Dollet

Phys. Rev. E 93, 032611 (2016) - Published 25 March, 2016

Derivation of the inverse Schulze-Hardy rule

Gregor Trefalt

Phys. Rev. E 93, 032612 (2016) - Published 28 March, 2016

Bubble-raft collapse and the nonequilibrium dynamics of two-state elastica

Chin-Chang Kuo, Devin Kachan, Alex J. Levine, and Michael Dennin

Phys. Rev. E 93, 032613 (2016) - Published 30 March, 2016

Liquid Crystals

Quantification of photoinduced order increase in liquid crystals with naphthopyran guests

Mariacristina Rumi, Seth A. Cazzell, Tamas Kosa, Ludmila Sukhomlinova, Bahman Taheri, Timothy J. White, and Timothy J. Bunning

Phys. Rev. E 93, 032701 (2016) - Published 7 March, 2016

Viscoelastic and elastomeric active matter: Linear instability and nonlinear dynamics

E. J. Hemingway, M. E. Cates, and S. M. Fielding

Phys. Rev. E 93, 032702 (2016) - Published 15 March, 2016

EDITORS' SUGGESTION

Sensing and tuning microfiber chirality with nematic chirogyral effect

Simon Čopar, David Seč, Luis E. Aguirre, Pedro L. Almeida, Mallory Dazza, Miha Ravnik, Maria H. Godinho, Pawel Pieranski, and Slobodan Žumer

Phys. Rev. E 93, 032703 (2016) - Published 15 March, 2016

Two-dimensional hexagonal smectic structure formed by topological defects

P. V. Dolganov, N. S. Shuravin, and Atsuo Fukuda

Phys. Rev. E 93, 032704 (2016) - Published 16 March, 2016

Around the corner: Colloidal assembly and wiring in groovy nematic cells

Yimin Luo, Francesca Serra, Daniel A. Beller, Mohamed A. Gharbi, Ningwei Li, Shu Yang, Randall D. Kamien, and Kathleen J. Stebe

Phys. Rev. E 93, 032705 (2016) - Published 25 March, 2016

Interaction of chiral rafts in self-assembled colloidal membranes

Sheng Xie, Michael F. Hagan, and Robert A. Pelcovits

Phys. Rev. E 93, 032706 (2016) - Published 31 March, 2016

Films and Interfaces

Coherent description of transport across the water interface: From nanodroplets to climate models

Øivind Wilhelmsen, Thuat T. Trinh, Anders Lervik, Vijay Kumar Badam, Signe Kjelstrup, and Dick Bedeaux

Phys. Rev. E 93, 032801 (2016) - Published 14 March, 2016

Filling transitions on rough surfaces: Inadequacy of Gaussian surface models

Renaud Dufour, Ciro Semprebon, and Stephan Herminghaus

Phys. Rev. E 93, 032802 (2016) - Published 17 March, 2016

Class of cooperative stochastic models: Exact and approximate solutions, simulations, and experiments using ionic self-assembly of nanoparticles

I. Mazilu, D. A. Mazilu, R. E. Melkerson, E. Hall-Mejia, G. J. Beck, S. Nshimyumukiza, and Carlos M. da Fonseca

Phys. Rev. E 93, 032803 (2016) - Published 25 March, 2016

EDITORS' SUGGESTION

Echoes from anharmonic normal modes in model glasses

Justin C. Burton and Sidney R. Nagel

Phys. Rev. E 93, 032905 (2016) - Published 25 March, 2016

EDITORS' SUGGESTION

Rich eight-branch spectrum of the oblique propagating longitudinal waves in partially spin-polarized electron-positron-ion plasmas

Pavel A. Andreev and Z. Iqbal

Phys. Rev. E 93, 033209 (2016) - Published 28 March, 2016

Computational Physics

Numerical solution of the stationary multicomponent nonlinear Schrödinger equation with a constraint on the angular momentum

Patrik Sandin, Magnus Ögren, and Mårten Gulliksson

Phys. Rev. E 93, 033301 (2016) - Published 1 March, 2016

Heat pump without particle transport or external work on the medium achieved by differential thermostatting of the phase space

Puneet Kumar Patra and Baidurya Bhattacharya

Phys. Rev. E 93, 033308 (2016) - Published 17 March, 2016

Equilibrium sampling by reweighting nonequilibrium simulation trajectories

Cheng Yang, Biao Wan, Shun Xu, Yanting Wang, and Xin Zhou

Phys. Rev. E 93, 033309 (2016) - Published 21 March, 2016

Theory of the Lattice Boltzmann method: Derivation of macroscopic equations via the Maxwell iteration

Wen-An Yong (雍稳安), Weifeng Zhao (赵伟峰), and Li-Shi Luo (罗礼诗)

Phys. Rev. E 93, 033310 (2016) - Published 22 March, 2016

Development of a discrete gas-kinetic scheme for simulation of two-dimensional viscous incompressible and compressible flows

L. M. Yang, C. Shu, and Y. Wang

Phys. Rev. E 93, 033311 (2016) - Published 23 March, 2016

Analysis of hydrodynamic fluctuations in heterogeneous adjacent multidomains in shear flow

Xin Bian, Mingge Deng, Yu-Hang Tang, and George Em Karniadakis

Phys. Rev. E 93, 033312 (2016) - Published 28 March, 2016

COMMENTS

Comment on “Nonparametric forecasting of low-dimensional dynamical systems”

Dmitri Kondrashov, Mickaël D. Chekroun, and Michael Ghil

Phys. Rev. E 93, 036201 (2016) - Published 16 March, 2016

Reply to “Comment on ‘Nonparametric forecasting of low-dimensional dynamical systems' ”

Tyrus Berry, Dimitrios Giannakis, and John Harlim

Phys. Rev. E 93, 036202 (2016) - Published 16 March, 2016

ERRATA

Erratum: Construction of microcanonical entropy on thermodynamic pillars [Phys. Rev. E 91, 052147 (2015)]

Michele Campisi

Phys. Rev. E 93, 039901 (2016) - Published 7 March, 2016

Erratum: Full Eulerian lattice Boltzmann model for conjugate heat transfer [Phys. Rev. E 92, 063305 (2015)]

Yang Hu, Decai Li, Shi Shu, and Xiaodong Niu

Phys. Rev. E 93, 039902 (2016) - Published 22 March, 2016

Erratum: Growth of stochastic resonance in neuronal ensembles with the input signal intensity [Phys. Rev. E 86, 011922 (2012)]

Shogo Yonekura, Yasuo Kuniyoshi, and Yoichiro Kawaguchi

Phys. Rev. E 93, 039903 (2016) - Published 28 March, 2016

Publisher's Note: Colored noise and memory effects on formal spiking neuron models [Phys. Rev. E 91, 062702 (2015)]

L. A. da Silva and R. D. Vilela

Phys. Rev. E 93, 039904 (2016) - Published 28 March, 2016

Publisher's Note: Perturbation analysis of steady and unsteady electrohydrodynamic chaotic advection inside translating drops [Phys. Rev. E 92, 023030 (2015)]

Fan Wu, Dmitri Vainchtein, and Thomas Ward

Phys. Rev. E 93, 039905 (2016) - Published 29 March, 2016