Volume 87, Issue 3

March 2013

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RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Maintaining the equipartition theorem in small heterogeneous molecular dynamics ensembles

Nima H. Siboni, Dierk Raabe, and Fathollah Varnik

Phys. Rev. E 87, 030101(R) (2013) - Published 7 March, 2013

RAPID COMMUNICATION

Action diffusion and lifetimes of quasistationary states in the Hamiltonian mean-field model

W. Ettoumi and M.-C. Firpo

Phys. Rev. E 87, 030102(R) (2013) - Published 12 March, 2013

RAPID COMMUNICATION

Ergodic least-squares estimators of the generalized diffusion coefficient for fractional Brownian motion

Denis Boyer, David S. Dean, Carlos Mejía-Monasterio, and Gleb Oshanin

Phys. Rev. E 87, 030103(R) (2013) - Published 29 March, 2013

RAPID COMMUNICATION

Time-averaged Einstein relation and fluctuating diffusivities for the Lévy walk

D. Froemberg and E. Barkai

Phys. Rev. E 87, 030104(R) (2013) - Published 29 March, 2013

Granular Materials

RAPID COMMUNICATION

Buckling-induced jamming in channel flow of particle rafts

Chin-Chang Kuo and Michael Dennin

Phys. Rev. E 87, 030201(R) (2013) - Published 11 March, 2013

Films, Interfaces, and Crystal Growth

RAPID COMMUNICATION

Thermal and quantum nucleation of $^{4}$ He crystals in aerogel

H. Matsuda, A. Ochi, R. Isozaki, R. Masumoto, R. Nomura, and Y. Okuda

Phys. Rev. E 87, 030401(R) (2013) - Published 15 March, 2013

Liquid Crystals

RAPID COMMUNICATION

Active and passive viscosities of a bent-core nematic liquid crystal

S. Dhara, Y. Balaji, J. Ananthaiah, P. Sathyanarayana, V. Ashoka, A. Spadlo, and R. Dabrowski

Phys. Rev. E 87, 030501(R) (2013) - Published 29 March, 2013

Biological Physics

RAPID COMMUNICATION

Real-time rheology of actively growing bacteria

R. Portela, P. L. Almeida, P. Patrício, T. Cidade, R. G. Sobral, and C. R. Leal

Phys. Rev. E 87, 030701(R) (2013) - Published 12 March, 2013

Interdisciplinary Physics

RAPID COMMUNICATION

Group formation through indirect reciprocity

Koji Oishi, Takashi Shimada, and Nobuyasu Ito

Phys. Rev. E 87, 030801(R) (2013) - Published 6 March, 2013

RAPID COMMUNICATION

Magnetic resonance pore imaging, a tool for porous media research

Stefan Hertel, Mark Hunter, and Petrik Galvosas

Phys. Rev. E 87, 030802(R) (2013) - Published 12 March, 2013

RAPID COMMUNICATION

Effect of timescale on energy landscape: Distinction between free-energy landscape and potential of mean force

Shinnosuke Kawai and Tamiki Komatsuzaki

Phys. Rev. E 87, 030803(R) (2013) - Published 14 March, 2013

Nonlinear Dynamics and Chaos

RAPID COMMUNICATION

Period variability of coupled noisy oscillators

Fumito Mori and Hiroshi Kori

Phys. Rev. E 87, 030901(R) (2013) - Published 15 March, 2013

RAPID COMMUNICATION

Role of delay in the mechanism of cluster formation

Aradhana Singh, Sarika Jalan, and Jürgen Kurths

Phys. Rev. E 87, 030902(R) (2013) - Published 25 March, 2013

Fluid Dynamics

RAPID COMMUNICATION

Enstrophy bounds and the range of space-time scales in the hydrostatic primitive equations

J. D. Gibbon and D. D. Holm

Phys. Rev. E 87, 031001(R) (2013) - Published 6 March, 2013

RAPID COMMUNICATION

Statistics of Lagrangian quantum turbulence

Christian Beck and Shihan Miah

Phys. Rev. E 87, 031002(R) (2013) - Published 12 March, 2013

RAPID COMMUNICATION

Shock-induced interface instability in viscous fluids and metals

Karnig O. Mikaelian

Phys. Rev. E 87, 031003(R) (2013) - Published 22 March, 2013

Plasma Physics

RAPID COMMUNICATION

Nonlinear instabilities driven by coherent phase-space structures

M. Lesur and P. H. Diamond

Phys. Rev. E 87, 031101(R) (2013) - Published 12 March, 2013

ARTICLES

Statistical Physics

Classical representation of a quantum system at equilibrium: Theory

James Dufty and Sandipan Dutta

Phys. Rev. E 87, 032101 (2013) - Published 4 March, 2013

Classical representation of a quantum system at equilibrium: Applications

Sandipan Dutta and James Dufty

Phys. Rev. E 87, 032102 (2013) - Published 4 March, 2013

Nematic-disordered phase transition in systems of long rigid rods on two-dimensional lattices

Joyjit Kundu, R. Rajesh, Deepak Dhar, and Jürgen F. Stilck

Phys. Rev. E 87, 032103 (2013) - Published 4 March, 2013

Fluctuations in multiplicative systems with jumps

Tomasz Srokowski

Phys. Rev. E 87, 032104 (2013) - Published 4 March, 2013

Renormalization-group flow and asymptotic behaviors at the Berezinskii-Kosterlitz-Thouless transitions

Andrea Pelissetto and Ettore Vicari

Phys. Rev. E 87, 032105 (2013) - Published 4 March, 2013

Kuramoto model with frequency-degree correlations on complex networks

B. C. Coutinho, A. V. Goltsev, S. N. Dorogovtsev, and J. F. F. Mendes

Phys. Rev. E 87, 032106 (2013) - Published 4 March, 2013

Statistical treatment of the electromagnetic radiation-reaction problem: Evaluation of the relativistic Boltzmann-Shannon entropy

Claudio Cremaschini and Massimo Tessarotto

Phys. Rev. E 87, 032107 (2013) - Published 5 March, 2013

Blume-Capel spin-glass model for Fe-Mn-Al alloys

D. Peña Lara, J. E. Diosa, and C. A. Lozano

Phys. Rev. E 87, 032108 (2013) - Published 5 March, 2013

Lattice Green's functions for kagome, diced, and hyperkagome lattices

Vipin Kerala Varma and Hartmut Monien

Phys. Rev. E 87, 032109 (2013) - Published 5 March, 2013

Accelerating subdiffusions governed by multiple-order time-fractional diffusion equations: Stochastic representation by a subordinated Brownian motion and computer simulations

Sebastian Orzeł, Wojciech Mydlarczyk, and Agnieszka Jurlewicz

Phys. Rev. E 87, 032110 (2013) - Published 6 March, 2013

Controlling uphill motion of an active Brownian particle driven by shot-noise energy pulses

Alessandro Fiasconaro, Ewa Gudowska–Nowak, and Werner Ebeling

Phys. Rev. E 87, 032111 (2013) - Published 6 March, 2013

Rectification of asymmetric surface vibrations with dry friction: An exactly solvable model

A. Baule and P. Sollich

Phys. Rev. E 87, 032112 (2013) - Published 6 March, 2013

Fluctuation theorems for non-Markovian quantum processes

B. Leggio, A. Napoli, H.-P. Breuer, and A. Messina

Phys. Rev. E 87, 032113 (2013) - Published 7 March, 2013

Minimum correlation in construction of multivariate distributions

Vanja M. Dukic and Nevena Marić

Phys. Rev. E 87, 032114 (2013) - Published 7 March, 2013

Dynamical phase transition for current statistics in a simple driven diffusive system

Carlos P. Espigares, Pedro L. Garrido, and Pablo I. Hurtado

Phys. Rev. E 87, 032115 (2013) - Published 7 March, 2013

Noise-induced escape in an excitable system

I. A. Khovanov, A. V. Polovinkin, D. G. Luchinsky, and P. V. E. McClintock

Phys. Rev. E 87, 032116 (2013) - Published 7 March, 2013

Absorbing phase transitions in diluted conserved threshold transfer process

Sang Bub Lee and Jong Soo Kim

Phys. Rev. E 87, 032117 (2013) - Published 8 March, 2013

Phase transitions and continuously variable scaling in a chiral quenched disordered model

Niladri Sarkar and Abhik Basu

Phys. Rev. E 87, 032118 (2013) - Published 8 March, 2013

Fluctuations and criticality in the random-field Ising model

Panagiotis E. Theodorakis, Ioannis Georgiou, and Nikolaos G. Fytas

Phys. Rev. E 87, 032119 (2013) - Published 8 March, 2013

Heat transport and diffusion in a canonical model of a relativistic gas

Malihe Ghodrat and Afshin Montakhab

Phys. Rev. E 87, 032120 (2013) - Published 8 March, 2013

Phase transitions in a triangular Blume-Capel antiferromagnet

M. Žukovič and A. Bobák

Phys. Rev. E 87, 032121 (2013) - Published 8 March, 2013

Nonsteady relaxation and critical exponents at the depinning transition

E. E. Ferrero, S. Bustingorry, and A. B. Kolton

Phys. Rev. E 87, 032122 (2013) - Published 11 March, 2013

Stacked triangular lattice: Percolation properties

K. J. Schrenk, N. A. M. Araújo, and H. J. Herrmann

Phys. Rev. E 87, 032123 (2013) - Published 11 March, 2013

High $q$ -state clock spin glasses in three dimensions and the Lyapunov exponents of chaotic phases and chaotic phase boundaries

Efe Ilker and A. Nihat Berker

Phys. Rev. E 87, 032124 (2013) - Published 11 March, 2013

Time and energy in team-based search

Omer H. Abdelrahman and Erol Gelenbe

Phys. Rev. E 87, 032125 (2013) - Published 12 March, 2013

Diffusion in nonuniform temperature and its geometric analog

Matteo Polettini

Phys. Rev. E 87, 032126 (2013) - Published 12 March, 2013

Impact of colored environmental noise on the extinction of a long-lived stochastic population: Role of the Allee effect

Eitan Y. Levine and Baruch Meerson

Phys. Rev. E 87, 032127 (2013) - Published 13 March, 2013

Phase diagram of hard asymmetric dumbbell particles

Kristina Milinković, Matthew Dennison, and Marjolein Dijkstra

Phys. Rev. E 87, 032128 (2013) - Published 13 March, 2013

Microscopic theory of Brownian motion revisited: The Rayleigh model

Changho Kim and George Em Karniadakis

Phys. Rev. E 87, 032129 (2013) - Published 14 March, 2013

Ergodic properties of continuous-time random walks: Finite-size effects and ensemble dependences

Tomoshige Miyaguchi and Takuma Akimoto

Phys. Rev. E 87, 032130 (2013) - Published 14 March, 2013

Emergence of equilibriumlike domains within nonequilibrium Ising spin systems

David Saad and Alexander Mozeika

Phys. Rev. E 87, 032131 (2013) - Published 14 March, 2013

Periodically driven Brownian motion with dry friction and ultrarelativistic Langevin equations

Andrey Pototsky and Fabio Marchesoni

Phys. Rev. E 87, 032132 (2013) - Published 15 March, 2013

Rumor evolution in social networks

Yichao Zhang, Shi Zhou, Zhongzhi Zhang, Jihong Guan, and Shuigeng Zhou

Phys. Rev. E 87, 032133 (2013) - Published 15 March, 2013

Critical off-equilibrium dynamics in glassy systems

Francesco Caltagirone, Giorgio Parisi, and Tommaso Rizzo

Phys. Rev. E 87, 032134 (2013) - Published 15 March, 2013

Chaos-induced dynamical hysteresis: Energetic and entropic barriers

Moupriya Das and Deb Shankar Ray

Phys. Rev. E 87, 032135 (2013) - Published 15 March, 2013

Reconstruction of Gaussian and log-normal fields with spectral smoothness

Niels Oppermann, Marco Selig, Michael R. Bell, and Torsten A. Enßlin

Phys. Rev. E 87, 032136 (2013) - Published 18 March, 2013

Complexity of energy eigenstates as a mechanism for equilibration

Lluís Masanes, Augusto J. Roncaglia, and Antonio Acín

Phys. Rev. E 87, 032137 (2013) - Published 18 March, 2013

Stability of frozen waves in the modified Cahn-Hilliard model

E. S. Benilov, W. T. Lee, and R. O. Sedakov

Phys. Rev. E 87, 032138 (2013) - Published 18 March, 2013

Adaptive machine and its thermodynamic costs

Armen E. Allahverdyan and Q. A. Wang

Phys. Rev. E 87, 032139 (2013) - Published 19 March, 2013

Exploring the energy landscape of $X Y$ models

Rachele Nerattini, Michael Kastner, Dhagash Mehta, and Lapo Casetti

Phys. Rev. E 87, 032140 (2013) - Published 19 March, 2013

Vanishing order-parameter critical fluctuations of an absorbing-state transition driven by long-range interactions

C. Argolo, Yan Quintino, Pedro H. Barros, and M. L. Lyra

Phys. Rev. E 87, 032141 (2013) - Published 19 March, 2013

Paths in the minimally weighted path model are incompatible with Schramm-Loewner evolution

C. Norrenbrock, O. Melchert, and A. K. Hartmann

Phys. Rev. E 87, 032142 (2013) - Published 20 March, 2013

Moment expansion for mapping of the confined diffusion

Pavol Kalinay

Phys. Rev. E 87, 032143 (2013) - Published 20 March, 2013

Anomalous transport in weakly heterogeneous geological porous media

Yan Wang

Phys. Rev. E 87, 032144 (2013) - Published 20 March, 2013

Dynamic phase transition in the three-dimensional kinetic Ising model in an oscillating field

Hyunhang Park and Michel Pleimling

Phys. Rev. E 87, 032145 (2013) - Published 20 March, 2013

Temperature measurement from perturbations

Cheng Zhang

Phys. Rev. E 87, 032146 (2013) - Published 20 March, 2013

Driven translocation of a polymer: Fluctuations at work

J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis

Phys. Rev. E 87, 032147 (2013) - Published 20 March, 2013

Interplay between partnership formation and competition in generalized May-Leonard games

Ahmed Roman, Debanjan Dasgupta, and Michel Pleimling

Phys. Rev. E 87, 032148 (2013) - Published 21 March, 2013

Effect of dimensionality on the percolation thresholds of various $d$ -dimensional lattices

S. Torquato and Y. Jiao

Phys. Rev. E 87, 032149 (2013) - Published 22 March, 2013

Temperature in nonequilibrium states and non-Fourier heat conduction

Yuan Dong (董源), Bing-Yang Cao (曹炳阳), and Zeng-Yuan Guo (过增元)

Phys. Rev. E 87, 032150 (2013) - Published 22 March, 2013

Kosterlitz-Thouless phase transition and re-entrance in an anisotropic three-state Potts model on the generalized kagome lattice

Yang Zhao, Wei Li, Bin Xi, Zhe Zhang, Xin Yan, Shi-Ju Ran, Tao Liu, and Gang Su

Phys. Rev. E 87, 032151 (2013) - Published 22 March, 2013

Use of microseismicity for determining the structure of the fracture network of large-scale porous media

Tayeb A. Tafti, Muhammad Sahimi, Fred Aminzadeh, and Charles G. Sammis

Phys. Rev. E 87, 032152 (2013) - Published 25 March, 2013

Diffusion of heat, energy, momentum, and mass in one-dimensional systems

Shunda Chen, Yong Zhang, Jiao Wang, and Hong Zhao

Phys. Rev. E 87, 032153 (2013) - Published 25 March, 2013

Real-space renormalization-group approach to the random transverse-field Ising model in finite dimensions

Ryoji Miyazaki and Hidetoshi Nishimori

Phys. Rev. E 87, 032154 (2013) - Published 25 March, 2013

Density dependence of the stress relaxation function of a simple fluid

Remco Hartkamp, Peter J. Daivis, and B. D. Todd

Phys. Rev. E 87, 032155 (2013) - Published 25 March, 2013

Mechanical properties of heat-treated organic foams

G. Amaral-Labat, Muhammad Sahimi, A. Pizzi, V. Fierro, and Alain Celzard

Phys. Rev. E 87, 032156 (2013) - Published 25 March, 2013

Phase transition and phase coexistence in coupled rings with driven exclusion processes

Rakesh Chatterjee, Anjan Kumar Chandra, and Abhik Basu

Phys. Rev. E 87, 032157 (2013) - Published 25 March, 2013

Thermal conductivity of anharmonic crystals with self-consistent baths: Analytical computation with discrete time

Emmanuel Pereira, Ricardo Falcao, and Humberto C. F. Lemos

Phys. Rev. E 87, 032158 (2013) - Published 25 March, 2013

Effective heating to several thousand kelvins of an optically trapped sphere in a liquid

Ignacio A. Martínez, Édgar Roldán, Juan M. R. Parrondo, and Dmitri Petrov

Phys. Rev. E 87, 032159 (2013) - Published 25 March, 2013

Topological regulation of activation barriers on fractal substrates

Raffaella Burioni, Federico Corberi, and Alessandro Vezzani

Phys. Rev. E 87, 032160 (2013) - Published 25 March, 2013

Second law for transitions between nonequilibrium steady states

G. Baris Bagci, Ugur Tirnakli, and Juergen Kurths

Phys. Rev. E 87, 032161 (2013) - Published 25 March, 2013

Describing the dynamics of processes consisting simultaneously of Poissonian and non-Poissonian kinetics

S. Eule and R. Friedrich

Phys. Rev. E 87, 032162 (2013) - Published 28 March, 2013

Transverse single-file diffusion near the zigzag transition

Jean-Baptiste Delfau, Christophe Coste, and Michel Saint Jean

Phys. Rev. E 87, 032163 (2013) - Published 29 March, 2013

Fluctuations and correlations of a driven tracer in a hard-core lattice gas

O. Bénichou, P. Illien, G. Oshanin, and R. Voituriez

Phys. Rev. E 87, 032164 (2013) - Published 29 March, 2013

Granular Materials

Transport properties for driven granular fluids in situations close to homogeneous steady states

Vicente Garzó, Moisés G. Chamorro, and Francisco Vega Reyes

Phys. Rev. E 87, 032201 (2013) - Published 4 March, 2013

Random packing fraction of bimodal spheres: An analytical expression

H. J. H. Brouwers

Phys. Rev. E 87, 032202 (2013) - Published 7 March, 2013

Directed network topologies of smart grain sensors

David M. Walker, Antoinette Tordesillas, Tomomichi Nakamura, and Toshihiro Tanizawa

Phys. Rev. E 87, 032203 (2013) - Published 11 March, 2013

Energy equipartition in two-dimensional granular systems with spherical intruders

I. Szelengowicz, M. A. Hasan, Y. Starosvetsky, A. Vakakis, and C. Daraio

Phys. Rev. E 87, 032204 (2013) - Published 14 March, 2013

Collapse of quasi-two-dimensional wet granular columns

Riccardo Artoni, Andrea C. Santomaso, Fabio Gabrieli, Diego Tono, and Simonetta Cola

Phys. Rev. E 87, 032205 (2013) - Published 14 March, 2013

Quasistatic rheology and microstructural description of sheared granular materials composed of platy particles

Mauricio Boton, Emilien Azéma, Nicolas Estrada, Farhang Radjaï, and Arcesio Lizcano

Phys. Rev. E 87, 032206 (2013) - Published 28 March, 2013

Rigid intruder inside a two-dimensional dense granular flow: Drag force and cavity formation

Evelyne Kolb, Pierre Cixous, Niels Gaudouen, and Thierry Darnige

Phys. Rev. E 87, 032207 (2013) - Published 29 March, 2013

Colloids and Complex Fluids

Faxén's theorem for nonsteady motion of a sphere through a compressible linear viscoelastic fluid in arbitrary flow

Adolfo Vázquez-Quesada, Marco Ellero, and Pep Español

Phys. Rev. E 87, 032301 (2013) - Published 5 March, 2013

Electrolyte dependence of particle motion near an electrode during ac polarization

Christopher L. Wirth, Paul J. Sides, and Dennis C. Prieve

Phys. Rev. E 87, 032302 (2013) - Published 8 March, 2013

Multiple liquid-liquid critical points and density anomaly in core-softened potentials

Marco Aurélio A. Barbosa, Evy Salcedo, and Marcia C. Barbosa

Phys. Rev. E 87, 032303 (2013) - Published 11 March, 2013

Nonlinear microrheology of dense colloidal suspensions: A mode-coupling theory

I. Gazuz and M. Fuchs

Phys. Rev. E 87, 032304 (2013) - Published 13 March, 2013

Self-assembly and tunable mechanics of reconfigurable colloidal crystals

Kevin L. Kohlstedt and Sharon C. Glotzer

Phys. Rev. E 87, 032305 (2013) - Published 13 March, 2013

Nucleation and growth of micellar polycrystals under time-dependent volume fraction conditions

Ameur Louhichi, Elisa Tamborini, Neda Ghofraniha, François Caton, Denis Roux, Julian Oberdisse, Luca Cipelletti, and Laurence Ramos

Phys. Rev. E 87, 032306 (2013) - Published 15 March, 2013

Phase transitions and phase equilibria in spherical confinement

Alexander Winkler, Antonia Statt, Peter Virnau, and Kurt Binder

Phys. Rev. E 87, 032307 (2013) - Published 20 March, 2013

Nonequilibrium growth of patchy-colloid networks on substrates

C. S. Dias, N. A. M. Araújo, and M. M. Telo da Gama

Phys. Rev. E 87, 032308 (2013) - Published 20 March, 2013

Isomerization of azobenzene and the enhancement of dynamic heterogeneities in molecular glass formers

V. Teboul, J.-B. Accary, and M. Chrysos

Phys. Rev. E 87, 032309 (2013) - Published 26 March, 2013

Mechanism of flow-induced biomolecular and colloidal aggregate breakup

Breanndán Ó Conchúir and Alessio Zaccone

Phys. Rev. E 87, 032310 (2013) - Published 29 March, 2013

Films, Interfaces, and Crystal Growth

Spiraling eutectic dendrites

Tamás Pusztai, László Rátkai, Attila Szállás, and László Gránásy

Phys. Rev. E 87, 032401 (2013) - Published 11 March, 2013

Turbulencelike scaling in polymer interfaces

I. J. Lee and Euldoo Park

Phys. Rev. E 87, 032402 (2013) - Published 11 March, 2013

Formation of a crystal of Brownian particles under a uniform external force

Masahide Sato, Hiroyasu Katsuno, and Yoshihisa Suzuki

Phys. Rev. E 87, 032403 (2013) - Published 18 March, 2013

Experimental constraints on the kinetics of ice lens initiation and growth

Tomotaka Saruya, Kei Kurita, and Alan W. Rempel

Phys. Rev. E 87, 032404 (2013) - Published 18 March, 2013

Phase separation in a binary mixture confined between symmetric parallel plates: Capillary condensation transition near the bulk critical point

Shunsuke Yabunaka, Ryuichi Okamoto, and Akira Onuki

Phys. Rev. E 87, 032405 (2013) - Published 19 March, 2013

Liquid Crystals

Particle size effects on nanocolloidal interactions in nematic liquid crystals

A. V. Ryzhkova and I. Muševič

Phys. Rev. E 87, 032501 (2013) - Published 4 March, 2013

Magnetic-field-induced structural change of a two-dimensional colloid of glycerol droplets on a nematic liquid-crystal surface

Sang-In Paek, Song-Jo Kim, and Jong-Hyun Kim

Phys. Rev. E 87, 032502 (2013) - Published 5 March, 2013

Optical generation, templating, and polymerization of three-dimensional arrays of liquid-crystal defects decorated by plasmonic nanoparticles

Julian S. Evans, Paul J. Ackerman, Dirk J. Broer, Jao van de Lagemaat, and Ivan I. Smalyukh

Phys. Rev. E 87, 032503 (2013) - Published 12 March, 2013

Theory of self-assembled smectic- $A$ crenellated disks: Membranes with cusped edges

Hao Tu and Robert A. Pelcovits

Phys. Rev. E 87, 032504 (2013) - Published 15 March, 2013

Flashing flexodomains and electroconvection rolls in a nematic liquid crystal

Péter Salamon, Nándor Éber, Alexei Krekhov, and Ágnes Buka

Phys. Rev. E 87, 032505 (2013) - Published 20 March, 2013

Description of optical properties of cholesteric photonic liquid crystals based on Maxwell equations and Kramers-Kronig relations

P. V. Dolganov, G. S. Ksyonz, V. E. Dmitrienko, and V. K. Dolganov

Phys. Rev. E 87, 032506 (2013) - Published 29 March, 2013

Polymers

Reactive conformations and non-Markovian reaction kinetics of a Rouse polymer searching for a target in confinement

T. Guérin, O. Bénichou, and R. Voituriez

Phys. Rev. E 87, 032601 (2013) - Published 18 March, 2013

Biological Physics

Nanodosimetry of Auger electrons: A case study from the decay of $^{125}$ I and 0–18-eV electron stopping cross sections of cytosine

M. Michaud, M. Bazin, and L. Sanche

Phys. Rev. E 87, 032701 (2013) - Published 4 March, 2013

Tension on dsDNA bound to ssDNA-RecA filaments may play an important role in driving efficient and accurate homology recognition and strand exchange

Julea Vlassakis, Efraim Feinstein, Darren Yang, Antoine Tilloy, Dominic Weiller, Julian Kates-Harbeck, Vincent Coljee, and Mara Prentiss

Phys. Rev. E 87, 032702 (2013) - Published 5 March, 2013

Linear response theory for two neural populations applied to gamma oscillation generation

Alexandre Payeur, Jérémie Lefebvre, Leonard Maler, and André Longtin

Phys. Rev. E 87, 032703 (2013) - Published 6 March, 2013

Physics of nanoporation and water entry driven by a high-intensity, ultrashort electrical pulse in the presence of membrane hydrophobic interactions

Q. Hu, Z. Zhang, H. Qiu, M. G. Kong, and R. P. Joshi

Phys. Rev. E 87, 032704 (2013) - Published 7 March, 2013

Two-state theory of single-molecule stretching experiments

Fabio Manca, Stefano Giordano, Pier Luca Palla, Fabrizio Cleri, and Luciano Colombo

Phys. Rev. E 87, 032705 (2013) - Published 8 March, 2013

Cooperative effects enhance the transport properties of molecular spider teams

Matthias Rank, Louis Reese, and Erwin Frey

Phys. Rev. E 87, 032706 (2013) - Published 8 March, 2013

Calculator for conformational statistics of DNA and applications to high-curvature bending

Brian C. Ross and Paul A. Wiggins

Phys. Rev. E 87, 032707 (2013) - Published 11 March, 2013

Anisotropic effective diffusion of torqued swimmers

M. Sandoval

Phys. Rev. E 87, 032708 (2013) - Published 12 March, 2013

Self-organized criticality in proteins: Hydropathic roughening profiles of G-protein-coupled receptors

J. C. Phillips

Phys. Rev. E 87, 032709 (2013) - Published 13 March, 2013

Impact of intrinsic biophysical diversity on the activity of spiking neurons

Man Yi Yim, Ad Aertsen, and Stefan Rotter

Phys. Rev. E 87, 032710 (2013) - Published 13 March, 2013

Adaptive evolution on a continuous lattice model

Elder S. Claudino, M. L. Lyra, Iram Gleria, and Paulo R. A. Campos

Phys. Rev. E 87, 032711 (2013) - Published 15 March, 2013

Vortex arrays as emergent collective phenomena for circle swimmers

A. Kaiser and H. Löwen

Phys. Rev. E 87, 032712 (2013) - Published 15 March, 2013

Interfacial properties in a discrete model for tumor growth

Belén Moglia, Nara Guisoni, and Ezequiel V. Albano

Phys. Rev. E 87, 032713 (2013) - Published 18 March, 2013

Cohesion-decohesion asymmetry in geckos

G. Puglisi and L. Truskinovsky

Phys. Rev. E 87, 032714 (2013) - Published 18 March, 2013

Flexoelectricity and thermal fluctuations of lipid bilayer membranes: Renormalization of flexoelectric, dielectric, and elastic properties

L. P. Liu and P. Sharma

Phys. Rev. E 87, 032715 (2013) - Published 20 March, 2013

Optimal reconstruction of the folding landscape using differential energy surface analysis

Arthur La Porta, Natalia A. Denesyuk, and Michel de Messieres

Phys. Rev. E 87, 032716 (2013) - Published 20 March, 2013

Impact of noise and damage on collective dynamics of scale-free neuronal networks

D. Holstein, A. V. Goltsev, and J. F. F. Mendes

Phys. Rev. E 87, 032717 (2013) - Published 22 March, 2013

Directional sensing by cooperative chemoreceptor arrays modeled as Monod-Wyman-Changeux clusters

Jin Yang (杨劲)

Phys. Rev. E 87, 032718 (2013) - Published 22 March, 2013

Casimir interactions in semiflexible polymers

Devin Kachan, Robijn Bruinsma, and Alex J. Levine

Phys. Rev. E 87, 032719 (2013) - Published 25 March, 2013

Cooperative motion of intrinsic and actuated semiflexible swimmers

I. Llopis, I. Pagonabarraga, M. Cosentino Lagomarsino, and C. P. Lowe

Phys. Rev. E 87, 032720 (2013) - Published 25 March, 2013

Modeling the mechanochemistry of the $ϕ 29$ DNA translocation motor

R. Perez-Carrasco, A. Fiasconaro, F. Falo, and J. M. Sancho

Phys. Rev. E 87, 032721 (2013) - Published 28 March, 2013

Strong feedback limit of the Goodwin circadian oscillator

Aurore Woller, Didier Gonze, and Thomas Erneux

Phys. Rev. E 87, 032722 (2013) - Published 29 March, 2013

Interdisciplinary Physics

Synchronous dynamics in the presence of short-term plasticity

Matteo di Volo, Roberto Livi, Stefano Luccioli, Antonio Politi, and Alessandro Torcini

Phys. Rev. E 87, 032801 (2013) - Published 4 March, 2013

Complex networks embedded in space: Dimension and scaling relations between mass, topological distance, and Euclidean distance

Thorsten Emmerich, Armin Bunde, Shlomo Havlin, Guanliang Li, and Daqing Li

Phys. Rev. E 87, 032802 (2013) - Published 6 March, 2013

Extracting spatial information from networks with low-order eigenvectors

Mihai Cucuringu, Vincent D. Blondel, and Paul Van Dooren

Phys. Rev. E 87, 032803 (2013) - Published 8 March, 2013

Pattern formation on networks with reactions: A continuous-time random-walk approach

C. N. Angstmann, I. C. Donnelly, and B. I. Henry

Phys. Rev. E 87, 032804 (2013) - Published 8 March, 2013

Contagion dynamics in time-varying metapopulation networks

Su-Yu Liu, Andrea Baronchelli, and Nicola Perra

Phys. Rev. E 87, 032805 (2013) - Published 11 March, 2013

Multistable binary decision making on networks

Andrew Lucas and Ching Hua Lee

Phys. Rev. E 87, 032806 (2013) - Published 12 March, 2013

Synchronization in clustered random networks

Thomas Kauê Dal’Maso Peron, Francisco A. Rodrigues, and Jürgen Kurths

Phys. Rev. E 87, 032807 (2013) - Published 12 March, 2013

Role of aging in a minimal model of earthquakes

O. M. Braun and Michel Peyrard

Phys. Rev. E 87, 032808 (2013) - Published 15 March, 2013

Reaction-diffusion processes and metapopulation models on duplex networks

Qi Xuan, Fang Du, Li Yu, and Guanrong Chen

Phys. Rev. E 87, 032809 (2013) - Published 15 March, 2013

Absence of the nonpercolating phase for percolation on the nonplanar Hanoi network

Takehisa Hasegawa and Tomoaki Nogawa

Phys. Rev. E 87, 032810 (2013) - Published 18 March, 2013

Two-layer tree-connected feed-forward neural network model for neural cryptography

Xinyu Lei, Xiaofeng Liao, Fei Chen, and Tingwen Huang

Phys. Rev. E 87, 032811 (2013) - Published 18 March, 2013

Fickian and non-Fickian diffusion with bimolecular reactions

Yotam Berkowitz, Yaniv Edery, Harvey Scher, and Brian Berkowitz

Phys. Rev. E 87, 032812 (2013) - Published 25 March, 2013

Transient to zero-lag synchronization in excitable networks

H. Brama, Y. Peleg, W. Kinzel, and I. Kanter

Phys. Rev. E 87, 032813 (2013) - Published 26 March, 2013

Motion-induced synchronization in metapopulations of mobile agents

Jesús Gómez-Gardeñes, Vincenzo Nicosia, Roberta Sinatra, and Vito Latora

Phys. Rev. E 87, 032814 (2013) - Published 28 March, 2013

Core organization of directed complex networks

N. Azimi-Tafreshi, S. N. Dorogovtsev, and J. F. F. Mendes

Phys. Rev. E 87, 032815 (2013) - Published 28 March, 2013

Spanning tree separation reveals community structure in networks

Jongkwang Kim and Thomas Wilhelm

Phys. Rev. E 87, 032816 (2013) - Published 29 March, 2013

Nonlinear Dynamics and Chaos

Dynamics of a dissipative, inelastic gravitational billiard

Alexandre E. Hartl, Bruce N. Miller, and Andre P. Mazzoleni

Phys. Rev. E 87, 032901 (2013) - Published 1 March, 2013

Frozen dynamics and synchronization through a secondary symmetry-breaking bifurcation

M. A. Miranda, J. Burguete, H. Mancini, and W. González-Viñas

Phys. Rev. E 87, 032902 (2013) - Published 5 March, 2013

Elementary but accurate analytical approximation for a one-dimensional soliton, conservative or not

L. Gil

Phys. Rev. E 87, 032903 (2013) - Published 6 March, 2013

Disorder-to-chaos transition in the conductance distribution of corrugated waveguides

A. Alcázar-López and J. A. Méndez-Bermúdez

Phys. Rev. E 87, 032904 (2013) - Published 6 March, 2013

Modulational instabilities in lattices with power-law hoppings and interactions

Giacomo Gori, Tommaso Macrì, and Andrea Trombettoni

Phys. Rev. E 87, 032905 (2013) - Published 8 March, 2013

Turing space in reaction-diffusion systems with density-dependent cross diffusion

E. P. Zemskov, K. Kassner, M. J. B. Hauser, and W. Horsthemke

Phys. Rev. E 87, 032906 (2013) - Published 13 March, 2013

Coherent traveling waves in nonlocally coupled chaotic systems

Volodymyr Dziubak, Yuri Maistrenko, and Eckehard Schöll

Phys. Rev. E 87, 032907 (2013) - Published 14 March, 2013

Mean-field and mean-ensemble frequencies of a system of coupled oscillators

Spase Petkoski, Dmytro Iatsenko, Lasko Basnarkov, and Aneta Stefanovska

Phys. Rev. E 87, 032908 (2013) - Published 18 March, 2013

Topological control of synchronous patterns in systems of networked chaotic oscillators

Chenbo Fu, Zhigang Deng, Liang Huang, and Xingang Wang

Phys. Rev. E 87, 032909 (2013) - Published 18 March, 2013

Rogue waves in coupled Hirota systems

Shihua Chen and Lian-Yan Song

Phys. Rev. E 87, 032910 (2013) - Published 20 March, 2013

Dynamics of mobile coupled phase oscillators

Koichiro Uriu, Saúl Ares, Andrew C. Oates, and Luis G. Morelli

Phys. Rev. E 87, 032911 (2013) - Published 21 March, 2013

Hyperbolic chaos at blinking coupling of noisy oscillators

Pavel V. Kuptsov, Sergey P. Kuznetsov, and Arkady Pikovsky

Phys. Rev. E 87, 032912 (2013) - Published 25 March, 2013

Single- and double-hump femtosecond vector solitons in the coupled Sasa-Satsuma system

Tao Xu and Xiang-Min Xu

Phys. Rev. E 87, 032913 (2013) - Published 25 March, 2013

Mixed-type vector solitons of the $N$ -coupled mixed derivative nonlinear Schrödinger equations from optical fibers

Min Li, Jing-Hua Xiao, Wen-Jun Liu, Pan Wang, Bo Qin, and Bo Tian

Phys. Rev. E 87, 032914 (2013) - Published 25 March, 2013

Aging generates regular motions in weakly chaotic systems

Takuma Akimoto and Eli Barkai

Phys. Rev. E 87, 032915 (2013) - Published 25 March, 2013

Multifractal analysis based on amplitude extrema of intrinsic mode functions

Guilherme S. Welter and Paulo A. A. Esquef

Phys. Rev. E 87, 032916 (2013) - Published 26 March, 2013

Nonlinear Schrödinger solitons oscillate under a constant external force

Franz G. Mertens, Niurka R. Quintero, and A. R. Bishop

Phys. Rev. E 87, 032917 (2013) - Published 27 March, 2013

Semiclassical theory of chaotic quantum resonances

T. Micklitz and A. Altland

Phys. Rev. E 87, 032918 (2013) - Published 29 March, 2013

Manifestation of scale invariance in the spectral fluctuations of random matrices

E. Landa, Irving O. Morales, P. Stránský, and A. Frank

Phys. Rev. E 87, 032919 (2013) - Published 29 March, 2013

Fluid Dynamics

Blob population dynamics during immiscible two-phase flows in reconstructed porous media

A. G. Yiotis, L. Talon, and D. Salin

Phys. Rev. E 87, 033001 (2013) - Published 4 March, 2013

Inverse cascade behavior in freely decaying two-dimensional fluid turbulence

P. D. Mininni and A. Pouquet

Phys. Rev. E 87, 033002 (2013) - Published 6 March, 2013

Space-time-resolved capillary wave turbulence

Michael Berhanu and Eric Falcon

Phys. Rev. E 87, 033003 (2013) - Published 7 March, 2013

Intermittent boundary layers and torque maxima in Taylor-Couette flow

Hannes J. Brauckmann and Bruno Eckhardt

Phys. Rev. E 87, 033004 (2013) - Published 8 March, 2013

Dynamical trapping of colloids at the stagnation points of electro-osmotic vortices of the second kind

Yoav Green and Gilad Yossifon

Phys. Rev. E 87, 033005 (2013) - Published 11 March, 2013

Electro-osmotic flows through topographically complicated porous media: Role of electropermeability tensor

Aditya Bandopadhyay, Debabrata DasGupta, Sushanta K. Mitra, and Suman Chakraborty

Phys. Rev. E 87, 033006 (2013) - Published 12 March, 2013

Gaussian vortex approximation to the instanton equations of two-dimensional turbulence

K. Kleineberg and R. Friedrich

Phys. Rev. E 87, 033007 (2013) - Published 12 March, 2013

Potential flow in the presence of a sudden expansion: Application to capillary driven transport in porous media

Eric M. Benner and Dimiter N. Petsev

Phys. Rev. E 87, 033008 (2013) - Published 13 March, 2013

Stability analysis of two-phase buoyancy-driven flow in the presence of a capillary transition zone

Hamid Emami Meybodi and Hassan Hassanzadeh

Phys. Rev. E 87, 033009 (2013) - Published 13 March, 2013

Suppressing drop rebound by electrically driven shape distortion

Sungchan Yun, Jiwoo Hong, and Kwan Hyoung Kang

Phys. Rev. E 87, 033010 (2013) - Published 18 March, 2013

Intermittency in spherical Couette dynamos

Raphaël Raynaud and Emmanuel Dormy

Phys. Rev. E 87, 033011 (2013) - Published 18 March, 2013

Description of non-Darcy flows in porous medium systems

Amanda L. Dye, James E. McClure, Cass T. Miller, and William G. Gray

Phys. Rev. E 87, 033012 (2013) - Published 18 March, 2013

Effect of shear on Rayleigh-Taylor mixing at small Atwood number

Bhanesh Akula, Malcolm J. Andrews, and Devesh Ranjan

Phys. Rev. E 87, 033013 (2013) - Published 21 March, 2013

Computation of azimuthal waves and their stability in thermal convection in rotating spherical shells with application to the study of a double-Hopf bifurcation

J. Sánchez, F. Garcia, and M. Net

Phys. Rev. E 87, 033014 (2013) - Published 22 March, 2013

Mechanisms of ignition by transient energy deposition: Regimes of combustion wave propagation

A. D. Kiverin, D. R. Kassoy, M. F. Ivanov, and M. A. Liberman

Phys. Rev. E 87, 033015 (2013) - Published 25 March, 2013

Emergence of helicity in rotating stratified turbulence

Raffaele Marino, Pablo D. Mininni, Duane Rosenberg, and Annick Pouquet

Phys. Rev. E 87, 033016 (2013) - Published 25 March, 2013

Wavelet methods to eliminate resonances in the Galerkin-truncated Burgers and Euler equations

R. M. Pereira, R. Nguyen van yen, M. Farge, and K. Schneider

Phys. Rev. E 87, 033017 (2013) - Published 28 March, 2013

Analysis of boundary slip in a flow with an oscillating wall

Joseph John Thalakkottor and Kamran Mohseni

Phys. Rev. E 87, 033018 (2013) - Published 29 March, 2013

Heat conductivity in relativistic systems investigated using a partonic cascade

M. Greif, F. Reining, I. Bouras, G. S. Denicol, Z. Xu, and C. Greiner

Phys. Rev. E 87, 033019 (2013) - Published 29 March, 2013

Plasma Physics

Limit of strong ion coupling due to electron shielding

M. Lyon, S. D. Bergeson, and M. S. Murillo

Phys. Rev. E 87, 033101 (2013) - Published 6 March, 2013

Shock wave structures in a dissipative quantum plasma

Samiran Ghosh and Nikhil Chakrabarti

Phys. Rev. E 87, 033102 (2013) - Published 12 March, 2013

Weak turbulence in two-dimensional magnetohydrodynamics

N. Tronko, S. V. Nazarenko, and S. Galtier

Phys. Rev. E 87, 033103 (2013) - Published 13 March, 2013

High-intensity few-cycle laser-pulse generation by the plasma-wakefield self-compression effect

A. Pipahl, E. A. Anashkina, M. Toncian, T. Toncian, S. A. Skobelev, A. V. Bashinov, A. A. Gonoskov, O. Willi, and A. V. Kim

Phys. Rev. E 87, 033104 (2013) - Published 18 March, 2013

Attractive forces between ions in quantum plasmas: Failure of linearized quantum hydrodynamics

M. Bonitz, E. Pehlke, and T. Schoof

Phys. Rev. E 87, 033105 (2013) - Published 20 March, 2013

Anisotropic terahertz response from a strong-field ionized electron-ion plasma

B. Pasenow, C. Dineen, J. Hader, M. Brio, J. V. Moloney, S. W. Koch, S. H. Chen, A. Becker, and A. Jaroń-Becker

Phys. Rev. E 87, 033106 (2013) - Published 20 March, 2013

Analyzing the liquid state of two-dimensional dust clusters: The instantaneous normal mode approach

André Melzer, André Schella, Jan Schablinski, Dietmar Block, and Alexander Piel

Phys. Rev. E 87, 033107 (2013) - Published 25 March, 2013

Terahertz radiation by two-color lasers due to the field ionization of gases

Wei-Min Wang, Yu-Tong Li, Zheng-Ming Sheng, Xin Lu, and Jie Zhang

Phys. Rev. E 87, 033108 (2013) - Published 26 March, 2013

Classical Physics

Magnetic moment of a single metal nanoparticle determined from the Faraday effect

Jacek Szczytko, Nataša Vaupotič, Karolina Madrak, Paweł Sznajder, and Ewa Górecka

Phys. Rev. E 87, 033201 (2013) - Published 12 March, 2013

Relativistic harmonic oscillator, the associated equations of motion, and algebraic integration methods

D. Babusci, G. Dattoli, M. Quattromini, and E. Sabia

Phys. Rev. E 87, 033202 (2013) - Published 21 March, 2013

BRIEF REPORTS

Films, Interfaces, and Crystal Growth

Height distributions in competitive one-dimensional Kardar-Parisi-Zhang systems

T. J. Oliveira

Phys. Rev. E 87, 034401 (2013) - Published 12 March, 2013

Interdisciplinary Physics

Ferromagnetic interaction model of activity level in workplace communication

Tomoaki Akitomi, Koji Ara, Jun-ichiro Watanabe, and Kazuo Yano

Phys. Rev. E 87, 034801 (2013) - Published 4 March, 2013

Nonlinear Dynamics and Chaos

Quasiperiodically driven maps in the low-dissipation limit

Shakir Bilal and Ramakrishna Ramaswamy

Phys. Rev. E 87, 034901 (2013) - Published 11 March, 2013

Plasma Physics

Coherent wake emission spectroscopy as a probe of steep plasma density profiles

A. Malvache, A. Borot, F. Quéré, and R. Lopez-Martens

Phys. Rev. E 87, 035101 (2013) - Published 15 March, 2013

COMMENTS

Comment on “Attractive forces between ions in quantum plasmas: Failure of linearized quantum hydrodynamics”

P. K. Shukla, B. Eliasson, and M. Akbari-Moghanjoughi

Phys. Rev. E 87, 037101 (2013) - Published 21 March, 2013

Reply to “Comment on ‘Attractive forces between ions in quantum plasmas: Failure of linearized quantum hydrodynamics’ ”

M. Bonitz, E. Pehlke, and T. Schoof

Phys. Rev. E 87, 037102 (2013) - Published 21 March, 2013

ERRATA

Erratum: Fluctuations and criticality in the random-field Ising model [Phys. Rev. E 87, 032119 (2013)]

Panagiotis E. Theodorakis, Ioannis Georgiou, and Nikolaos G. Fytas

Phys. Rev. E 87, 039901 (2013) - Published 18 March, 2013

Erratum: Anomalous scaling and large-scale anisotropy in magnetohydrodynamic turbulence: Two-loop renormalization-group analysis of the Kazantsev-Kraichnan kinematic model [Phys. Rev. E 85, 065301(R) (2012)]

N. V. Antonov and N. M. Gulitskiy

Phys. Rev. E 87, 039902 (2013) - Published 19 March, 2013

Publisher's Note: Mean scalar concentration profile in a sheared and thermally stratified atmospheric surface layer [Phys. Rev. E 87, 023004 (2013)]

Gabriel G. Katul, Dan Li, Marcelo Chamecki, and Elie Bou-Zeid

Phys. Rev. E 87, 039903 (2013) - Published 22 March, 2013

Erratum: Collision dynamics of granular particles with adhesion [Phys. Rev. E 76, 051302 (2007)]

Nikolai V. Brilliantov, Nicole Albers, Frank Spahn, and Thorsten Pöschel

Phys. Rev. E 87, 039904 (2013) - Published 29 March, 2013