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Physical Review E

Volume 80, Issue 6

December 2009
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HIGHLIGHTED ARTICLES

FEATURED IN PHYSICS

Critical Casimir effect in classical binary liquid mixtures

A. Gambassi, A. Maciołek, C. Hertlein, U. Nellen, L. Helden, C. Bechinger, and S. Dietrich

Phys. Rev. E 80, 061143 (2009) - Published 31 December, 2009

FEATURED IN PHYSICS

Ubiquity of chaotic magnetic-field lines generated by three-dimensionally crossed wires in modern electric circuits

M. Hosoda, T. Miyaguchi, K. Imagawa, and K. Nakamura

Phys. Rev. E 80, 067202 (2009) - Published 21 December, 2009

RAPID COMMUNICATIONS

Statistical physics

RAPID COMMUNICATION

True and quasi-long-range order in the generalized q-state clock model

Seung Ki Baek, Petter Minnhagen, and Beom Jun Kim

Phys. Rev. E 80, 060101(R) (2009) - Published 4 December, 2009

RAPID COMMUNICATION

Signal acquisition via polarization modulation in single photon sources

Mark D. McDonnell and Adrian P. Flitney

Phys. Rev. E 80, 060102(R) (2009) - Published 8 December, 2009

RAPID COMMUNICATION

Energy landscape and phase transitions in the self-gravitating ring model

Cesare Nardini and Lapo Casetti

Phys. Rev. E 80, 060103(R) (2009) - Published 10 December, 2009

RAPID COMMUNICATION

Ideal glass transition in a simple two-dimensional lattice model

Z. Rotman and E. Eisenberg

Phys. Rev. E 80, 060104(R) (2009) - Published 22 December, 2009

Granular materials

RAPID COMMUNICATION

Sliding through a superlight granular medium

F. Pacheco-Vázquez and J. C. Ruiz-Suárez

Phys. Rev. E 80, 060301(R) (2009) - Published 14 December, 2009

RAPID COMMUNICATION

Shear zone refraction and deflection in layered granular materials

Tamás Börzsönyi, Tamás Unger, and Balázs Szabó

Phys. Rev. E 80, 060302(R) (2009) - Published 21 December, 2009

RAPID COMMUNICATION

Stress correlations in granular materials: An entropic formulation

G. Lois, J. Zhang, T. S. Majmudar, S. Henkes, B. Chakraborty, C. S. O’Hern, and R. P. Behringer

Phys. Rev. E 80, 060303(R) (2009) - Published 28 December, 2009

RAPID COMMUNICATION

Particle kinematics in a dilute, three-dimensional, vibration-fluidized granular medium

Hong-Qiang Wang, Klebert Feitosa, and Narayanan Menon

Phys. Rev. E 80, 060304(R) (2009) - Published 30 December, 2009

Films, interfaces, and crystal growth

RAPID COMMUNICATION

Viscosity-dependent liquid slip at molecularly smooth hydrophobic surfaces

Sean P. McBride and Bruce M. Law

Phys. Rev. E 80, 060601(R) (2009) - Published 7 December, 2009

Liquid crystals

RAPID COMMUNICATION

Patterning-induced surface chirality and modulation of director twist in a nematic cell

Yoonseuk Choi, Timothy Atherton, Sameh Ferjani, Rolfe G. Petschek, and Charles Rosenblatt

Phys. Rev. E 80, 060701(R) (2009) - Published 4 December, 2009

Biological physics

RAPID COMMUNICATION

Nonlinear dynamics of cell orientation

S. A. Safran and Rumi De

Phys. Rev. E 80, 060901(R) (2009) - Published 30 December, 2009

ARTICLES

Statistical physics

Phase diagram of the Weeks-Chandler-Andersen potential from very low to high temperatures and pressures

Alauddin Ahmed and Richard J. Sadus

Phys. Rev. E 80, 061101 (2009) - Published 1 December, 2009

Langevin equation approach to diffusion magnetic resonance imaging

Jennie M. Cooke, Yuri P. Kalmykov, William T. Coffey, and Christian M. Kerskens

Phys. Rev. E 80, 061102 (2009) - Published 2 December, 2009

Absence of the discontinuous transition in the one-dimensional triplet creation model

Su-Chan Park

Phys. Rev. E 80, 061103 (2009) - Published 4 December, 2009

Bounded rationality leads to equilibrium of public goods games

Zhaojin Xu, Zhen Wang, and Lianzhong Zhang

Phys. Rev. E 80, 061104 (2009) - Published 4 December, 2009

Discontinuous nonequilibrium phase transitions in a nonlinearly pulse-coupled excitable lattice model

Vladimir R. V. Assis and Mauro Copelli

Phys. Rev. E 80, 061105 (2009) - Published 7 December, 2009

Intensity statistics of random signals in Gaussian noise

A. A. Chabanov

Phys. Rev. E 80, 061106 (2009) - Published 8 December, 2009

One-component plasma of point charges and of charged rods

Marius M. Hatlo, Argyrios Karatrantos, and Leo Lue

Phys. Rev. E 80, 061107 (2009) - Published 8 December, 2009

Hierarchical models of rigidity percolation

J. Barré

Phys. Rev. E 80, 061108 (2009) - Published 8 December, 2009

Exact energy spectrum of a two-temperature kinetic Ising model

I. Mazilu and H. T. Williams

Phys. Rev. E 80, 061109 (2009) - Published 8 December, 2009

Hard-sphere crystallization gets rarer with increasing dimension

J. A. van Meel, B. Charbonneau, A. Fortini, and P. Charbonneau

Phys. Rev. E 80, 061110 (2009) - Published 8 December, 2009

Distinct scalings for mean first-passage time of random walks on scale-free networks with the same degree sequence

Zhongzhi Zhang, Wenlei Xie, Shuigeng Zhou, Mo Li, and Jihong Guan

Phys. Rev. E 80, 061111 (2009) - Published 8 December, 2009

Simulating stochastic dynamics using large time steps

O. Corradini, P. Faccioli, and H. Orland

Phys. Rev. E 80, 061112 (2009) - Published 9 December, 2009

Einstein-Helfand form for transport coefficients from coarse-grained descriptions

Pep Español

Phys. Rev. E 80, 061113 (2009) - Published 10 December, 2009

Characterizing steady-state and transient properties of reaction-diffusion systems

Sven Dorosz and Michel Pleimling

Phys. Rev. E 80, 061114 (2009) - Published 14 December, 2009

Molecular wires acting as quantum heat ratchets

Fei Zhan, Nianbei Li, Sigmund Kohler, and Peter Hänggi

Phys. Rev. E 80, 061115 (2009) - Published 14 December, 2009

Ground states and formal duality relations in the Gaussian core model

Henry Cohn, Abhinav Kumar, and Achill Schürmann

Phys. Rev. E 80, 061116 (2009) - Published 14 December, 2009

Record events in growing populations: Universality, correlation, and aging

Iddo Eliazar and Joseph Klafter

Phys. Rev. E 80, 061117 (2009) - Published 15 December, 2009

Data-driven approach to decomposing complex enzyme kinetics with surrogate models

Christopher P. Calderon

Phys. Rev. E 80, 061118 (2009) - Published 15 December, 2009

Memory effects in recurrent and extreme events

C. Nicolis and G. Nicolis

Phys. Rev. E 80, 061119 (2009) - Published 16 December, 2009

Another method to compute the thermodynamic Casimir force in lattice models

Martin Hasenbusch

Phys. Rev. E 80, 061120 (2009) - Published 16 December, 2009

Survival probability of a subdiffusive particle in a d-dimensional sea of mobile traps

R. Borrego, E. Abad, and Santos B. Yuste

Phys. Rev. E 80, 061121 (2009) - Published 16 December, 2009

Discriminating between normal and anomalous random walks

Bartłomiej Dybiec and Ewa Gudowska-Nowak

Phys. Rev. E 80, 061122 (2009) - Published 16 December, 2009

Molecular dynamics and analytical Langevin equation approach for the self-diffusion constant of an anisotropic fluid

Pedro J. Colmenares, Floralba López, and Wilmer Olivares-Rivas

Phys. Rev. E 80, 061123 (2009) - Published 16 December, 2009

Statistical mechanical analysis of the Kronecker channel model for multiple-input multiple-output wireless communication

Atsushi Hatabu, Koujin Takeda, and Yoshiyuki Kabashima

Phys. Rev. E 80, 061124 (2009) - Published 17 December, 2009

Nucleation stage with nonsteady growth of supercritical gas bubbles in a strongly supersaturated liquid solution and the effect of excluded volume

Anatoly E. Kuchma, Fedor M. Kuni, and Alexander K. Shchekin

Phys. Rev. E 80, 061125 (2009) - Published 18 December, 2009

Multifractal analysis of light scattering-intensity fluctuations

F. Shayeganfar, S. Jabbari-Farouji, M. Sadegh Movahed, G. R. Jafari, and M. Reza Rahimi Tabar

Phys. Rev. E 80, 061126 (2009) - Published 18 December, 2009

Universality classes of the absorbing state transition in a system with interacting static and diffusive populations

C. Argolo, Yan Quintino, Y. Siqueira, Iram Gleria, and M. L. Lyra

Phys. Rev. E 80, 061127 (2009) - Published 22 December, 2009

Pairwise summation approximation of Casimir energy from first principles

P. Rodriguez-Lopez

Phys. Rev. E 80, 061128 (2009) - Published 23 December, 2009

Quantum optical thermodynamic machines: Lasing as relaxation

M. Youssef, G. Mahler, and A.-S. F. Obada

Phys. Rev. E 80, 061129 (2009) - Published 23 December, 2009

Quantum quenches in the Dicke model: Statistics of the work done and of other observables

Francis N. C. Paraan and Alessandro Silva

Phys. Rev. E 80, 061130 (2009) - Published 28 December, 2009

Stiffness dependence of critical exponents of semiflexible polymer chains situated on two-dimensional compact fractals

Ivan Živić, Sunčica Elezović-Hadžić, and Sava Milošević

Phys. Rev. E 80, 061131 (2009) - Published 28 December, 2009

Distribution in flowing reaction-diffusion systems

Atsushi Kamimura, Hans J. Herrmann, and Nobuyasu Ito

Phys. Rev. E 80, 061132 (2009) - Published 28 December, 2009

Exact calculation of the tortuosity in disordered linear pores in the Knudsen regime

Stefanie Russ

Phys. Rev. E 80, 061133 (2009) - Published 28 December, 2009

Persistent memory of diffusing particles

N. Suciu, C. Vamoş, F. A. Radu, H. Vereecken, and P. Knabner

Phys. Rev. E 80, 061134 (2009) - Published 28 December, 2009

Interacting molecular motors: Efficiency and work fluctuations

František Slanina

Phys. Rev. E 80, 061135 (2009) - Published 28 December, 2009

Statistical mechanics of maximal independent sets

Luca Dall’Asta, Paolo Pin, and Abolfazl Ramezanpour

Phys. Rev. E 80, 061136 (2009) - Published 29 December, 2009

Local entropy in quasi-one-dimensional heat transport

Chang Sub Kim and Gary P. Morriss

Phys. Rev. E 80, 061137 (2009) - Published 29 December, 2009

Nonequilibrium phase transition in an exactly solvable driven Ising model with friction

Alfred Hucht

Phys. Rev. E 80, 061138 (2009) - Published 30 December, 2009

Experimental study of resonant activation in a noisy bistable vertical-cavity surface-emitting laser with strong periodic excitation

V. N. Chizhevsky

Phys. Rev. E 80, 061139 (2009) - Published 30 December, 2009

Existence of a dynamic compensation temperature of a mixed spin-2 and spin-5/2 Ising ferrimagnetic system in an oscillating field

Mustafa Keskin and Mehmet Ertaş

Phys. Rev. E 80, 061140 (2009) - Published 30 December, 2009

Thermodynamic constraints on fluctuation phenomena

O. J. E. Maroney

Phys. Rev. E 80, 061141 (2009) - Published 31 December, 2009

Diffusion in a two-dimensional channel with curved midline and varying width: Reduction to an effective one-dimensional description

R. Mark Bradley

Phys. Rev. E 80, 061142 (2009) - Published 31 December, 2009

FEATURED IN PHYSICS

Critical Casimir effect in classical binary liquid mixtures

A. Gambassi, A. Maciołek, C. Hertlein, U. Nellen, L. Helden, C. Bechinger, and S. Dietrich

Phys. Rev. E 80, 061143 (2009) - Published 31 December, 2009

Equilibrium and linear transport properties of fluids

Microscopic study and modeling of thermodiffusion in binary associating mixtures

Morteza Eslamian and M. Ziad Saghir

Phys. Rev. E 80, 061201 (2009) - Published 3 December, 2009

Thermal conductivity of the Lennard-Jones chain fluid model

Guillaume Galliero and Christian Boned

Phys. Rev. E 80, 061202 (2009) - Published 10 December, 2009

Models for ionic contribution to the complex dielectric constant of nematic liquid crystals

A. L. Alexe-Ionescu, G. Barbero, and I. Lelidis

Phys. Rev. E 80, 061203 (2009) - Published 10 December, 2009

Critical particle size where the Stokes-Einstein relation breaks down

Zhigang Li

Phys. Rev. E 80, 061204 (2009) - Published 10 December, 2009

Generalized Rosenfeld scalings for tracer diffusivities in not-so-simple fluids: Mixtures and soft particles

William P. Krekelberg, Mark J. Pond, Gaurav Goel, Vincent K. Shen, Jeffrey R. Errington, and Thomas M. Truskett

Phys. Rev. E 80, 061205 (2009) - Published 14 December, 2009

Thermal effect on the dynamic infiltration of water into single-walled carbon nanotubes

Jianbing Zhao, Ling Liu, Patricia J. Culligan, and Xi Chen

Phys. Rev. E 80, 061206 (2009) - Published 15 December, 2009

Local orientational ordering in fluids of spherical molecules with dipolarlike anisotropic adhesion

Domenico Gazzillo, Riccardo Fantoni, and Achille Giacometti

Phys. Rev. E 80, 061207 (2009) - Published 31 December, 2009

Granular materials

Three-dimensional reconstruction of statistically optimal unit cells of polydisperse particulate composites from microtomography

H. Lee, M. Brandyberry, A. Tudor, and K. Matouš

Phys. Rev. E 80, 061301 (2009) - Published 9 December, 2009

Diffusive and subdiffusive axial transport of granular material in rotating mixers

David Fischer, Tilo Finger, Frank Angenstein, and Ralf Stannarius

Phys. Rev. E 80, 061302 (2009) - Published 9 December, 2009

Geometrical families of mechanically stable granular packings

Guo-Jie Gao, Jerzy Blawzdziewicz, and Corey S. O’Hern

Phys. Rev. E 80, 061303 (2009) - Published 16 December, 2009

Experimental demonstration of nonuniform frequency distributions of granular packings

Guo-Jie Gao, Jerzy Blawzdziewicz, Corey S. O’Hern, and Mark Shattuck

Phys. Rev. E 80, 061304 (2009) - Published 17 December, 2009

Unusual diffusion in a quasi-two-dimensional granular gas

Wennan Chen and Kiwing To

Phys. Rev. E 80, 061305 (2009) - Published 22 December, 2009

Horizontal segregation in a vertically vibrated binary granular system

Xiaodong Shi, Guoqing Miao, and Hua Zhang

Phys. Rev. E 80, 061306 (2009) - Published 29 December, 2009

Jammed frictionless disks: Connecting local and global response

Wouter G. Ellenbroek, Martin van Hecke, and Wim van Saarloos

Phys. Rev. E 80, 061307 (2009) - Published 29 December, 2009

Colloidal dispersions, suspensions, and aggregates

Morphological models of complex ordered materials based on inhomogeneously clipped Gaussian fields

Cedric J. Gommes and Jean-Paul Pirard

Phys. Rev. E 80, 061401 (2009) - Published 8 December, 2009

Direct numerical simulations for non-Newtonian rheology of concentrated particle dispersions

Takuya Iwashita and Ryoichi Yamamoto

Phys. Rev. E 80, 061402 (2009) - Published 11 December, 2009

Influence of confinement by smooth and rough walls on particle dynamics in dense hard-sphere suspensions

H. B. Eral, D. van den Ende, F. Mugele, and M. H. G. Duits

Phys. Rev. E 80, 061403 (2009) - Published 14 December, 2009

Liquid-to-solid transition of concentrated suspensions under complex transient shear histories

Ying Guo, Wei Yu, Yuanze Xu, and Chixing Zhou

Phys. Rev. E 80, 061404 (2009) - Published 15 December, 2009

Structured and complex fluids

Central role of thermal collective strain in the relaxation of structure in a supercooled liquid

Asaph Widmer-Cooper and Peter Harrowell

Phys. Rev. E 80, 061501 (2009) - Published 16 December, 2009

Mode-coupling behavior of a Lennard-Jones binary mixture upon increasing confinement

P. Gallo, A. Attili, and M. Rovere

Phys. Rev. E 80, 061502 (2009) - Published 23 December, 2009

Films, interfaces, and crystal growth

Dynamical surface affinity of diphasic liquids as a probe of wettability of multimodal porous media

J.-P. Korb, G. Freiman, B. Nicot, and P. Ligneul

Phys. Rev. E 80, 061601 (2009) - Published 1 December, 2009

Changing growth conditions during surface growth

Yen-Liang Chou, Michel Pleimling, and R. K. P. Zia

Phys. Rev. E 80, 061602 (2009) - Published 18 December, 2009

Modeling growth of one-dimensional islands: Influence of reactive defects

Pavel Kocán, Pavel Sobotík, Ivan Ošt’ádal, Martin Setvín, and Stanislav Haviar

Phys. Rev. E 80, 061603 (2009) - Published 22 December, 2009

Development of an atomic-force-microscope-based hanging-fiber rheometer for interfacial microrheology

Xiaomin Xiong, Shuo Guo, Zuli Xu, Ping Sheng, and Penger Tong

Phys. Rev. E 80, 061604 (2009) - Published 30 December, 2009

Liquid crystals

Rotational dissipation and the Miesowicz coefficients

M. Simões, K. Yamaguti, and A. J. Palangana

Phys. Rev. E 80, 061701 (2009) - Published 11 December, 2009

Liquid crystalline and antinematic behavior of shape-persistent macrocycles from molecular-dynamics simulations

Carlos Avendaño and Erich A. Müller

Phys. Rev. E 80, 061702 (2009) - Published 28 December, 2009

Polymers

Dynamics of loop formation in a semiflexible polymer

K. P. Santo and K. L. Sebastian

Phys. Rev. E 80, 061801 (2009) - Published 10 December, 2009

Simulation study of sulfonate cluster swelling in ionomers

Elshad Allahyarov, Philip L. Taylor, and Hartmut Löwen

Phys. Rev. E 80, 061802 (2009) - Published 30 December, 2009

Response of shear stress to ac electric fields under steady shear flow in a droplet-dispersed phase

Yang Ho Na, Kohei Aida, Ryosuke Sakai, Toyoji Kakuchi, and Hiroshi Orihara

Phys. Rev. E 80, 061803 (2009) - Published 30 December, 2009

Biological physics

Stochastic model of self-assembly of cell-laden hydrogels

Zhenyu Shi, Nan Chen, Yanan Du, Ali Khademhosseini, and Mark Alber

Phys. Rev. E 80, 061901 (2009) - Published 4 December, 2009

Aggregation of chemotactic organisms in a differential flow

Javier Muñoz-García and Zoltán Neufeld

Phys. Rev. E 80, 061902 (2009) - Published 4 December, 2009

Computer simulation of wound closure in epithelial tissues: Cell–basal-lamina adhesion

Tatsuzo Nagai and Hisao Honda

Phys. Rev. E 80, 061903 (2009) - Published 9 December, 2009

Base-pair opening and bubble transport in a DNA double helix induced by a protein molecule in a viscous medium

V. Vasumathi and M. Daniel

Phys. Rev. E 80, 061904 (2009) - Published 9 December, 2009

Vesicles under simple shear flow: Elucidating the role of relevant control parameters

Badr Kaoui, Alexander Farutin, and Chaouqi Misbah

Phys. Rev. E 80, 061905 (2009) - Published 9 December, 2009

Nonlinear breathing modes at a defect site in DNA

Ciprian-Ionuţ Duduială, Jonathan A. D. Wattis, Ian L. Dryden, and Charles A. Laughton

Phys. Rev. E 80, 061906 (2009) - Published 10 December, 2009

Critical examination of the inherent-structure-landscape analysis of two-state folding proteins

Johannes-Geert Hagmann, Naoko Nakagawa, and Michel Peyrard

Phys. Rev. E 80, 061907 (2009) - Published 11 December, 2009

Photonic crystal fiber in the polychaete worm Pherusa sp.

Tomasz M. Trzeciak and Peter Vukusic

Phys. Rev. E 80, 061908 (2009) - Published 14 December, 2009

Length-dependent force characteristics of coiled coils

Sara Sadeghi and Eldon Emberly

Phys. Rev. E 80, 061909 (2009) - Published 14 December, 2009

Maximum, minimum, and optimal mutation rates in dynamic environments

Mark Ancliff and Jeong-Man Park

Phys. Rev. E 80, 061910 (2009) - Published 15 December, 2009

Disordered, stretched, and semiflexible biopolymers in two dimensions

Zicong Zhou and Béla Joós

Phys. Rev. E 80, 061911 (2009) - Published 17 December, 2009

Elastic energy of protein-DNA chimeras

Chiao-Yu Tseng, Andrew Wang, Giovanni Zocchi, Biljana Rolih, and Alex J. Levine

Phys. Rev. E 80, 061912 (2009) - Published 17 December, 2009

Finite-temperature local protein sequence alignment: Percolation and free-energy distribution

S. Wolfsheimer, O. Melchert, and A. K. Hartmann

Phys. Rev. E 80, 061913 (2009) - Published 17 December, 2009

Spontaneous brain activity as a source of ideal 1/f noise

Paolo Allegrini, Danilo Menicucci, Remo Bedini, Leone Fronzoni, Angelo Gemignani, Paolo Grigolini, Bruce J. West, and Paolo Paradisi

Phys. Rev. E 80, 061914 (2009) - Published 18 December, 2009

Effect of correlated lateral geniculate nucleus firing rates on predictions for monocular eye closure versus monocular retinal inactivation

Brian S. Blais, Leon N Cooper, and Harel Z. Shouval

Phys. Rev. E 80, 061915 (2009) - Published 21 December, 2009

Maximum likelihood estimation of protein kinetic parameters under weak assumptions from unfolding force spectroscopy experiments

Daniel Aioanei, Bruno Samorì, and Marco Brucale

Phys. Rev. E 80, 061916 (2009) - Published 23 December, 2009

Adaptive self-organization in a realistic neural network model

Christian Meisel and Thilo Gross

Phys. Rev. E 80, 061917 (2009) - Published 23 December, 2009

Effect of hydrogen bond networks on the nucleation mechanism of protein folding

Y. S. Djikaev and Eli Ruckenstein

Phys. Rev. E 80, 061918 (2009) - Published 29 December, 2009

Minimal model for synchronization induced by hydrodynamic interactions

Bian Qian, Hongyuan Jiang, David A. Gagnon, Kenneth S. Breuer, and Thomas R. Powers

Phys. Rev. E 80, 061919 (2009) - Published 30 December, 2009

Pitchfork and Hopf bifurcation thresholds in stochastic equations with delayed feedback

Mathieu Gaudreault, Françoise Lépine, and Jorge Viñals

Phys. Rev. E 80, 061920 (2009) - Published 31 December, 2009

BRIEF REPORTS

Statistical physics

Effectiveness of the Kozachenko-Leonenko estimator for generalized entropic forms

Sílvio M. Duarte Queirós

Phys. Rev. E 80, 062101 (2009) - Published 3 December, 2009

Dispersionless motion in a periodically rocked periodic potential

S. Saikia and Mangal C. Mahato

Phys. Rev. E 80, 062102 (2009) - Published 7 December, 2009

Cooperative jump motions of jammed particles in a one-dimensional periodic potential

Hidetsugu Sakaguchi

Phys. Rev. E 80, 062103 (2009) - Published 16 December, 2009

One-dimensional diffusion: Validity of various expressions for jump rates

S. J. Manzi, G. A. Ranzuglia, and V. D. Pereyra

Phys. Rev. E 80, 062104 (2009) - Published 17 December, 2009

Hierarchical mean-field model describing relaxation in a small-world network

E. B. Postnikov

Phys. Rev. E 80, 062105 (2009) - Published 21 December, 2009

Biological physics

Curvature and shape determination of growing bacteria

Ranjan Mukhopadhyay and Ned S. Wingreen

Phys. Rev. E 80, 062901 (2009) - Published 17 December, 2009

Contrasting methods for symbolic analysis of biological regulatory networks

Roy Wilds and Leon Glass

Phys. Rev. E 80, 062902 (2009) - Published 29 December, 2009

COMMENTS

Comment on “Writhe formulas and antipodal points in plectonemic DNA configurations”

Joseph Samuel, Supurna Sinha, and Abhijit Ghosh

Phys. Rev. E 80, 063901 (2009) - Published 14 December, 2009

Reply to “Comment on ‘Writhe formulas and antipodal points in plectonemic DNA configurations’ ”

Sébastien Neukirch and Eugene L. Starostin

Phys. Rev. E 80, 063902 (2009) - Published 14 December, 2009

RAPID COMMUNICATIONS

Interdisciplinary physics

RAPID COMMUNICATION

Unusual mechanism for the short-range electron transfer within gold–alkanethiol–ionic-liquid films of subnanometer thickness

Dimitri E. Khoshtariya, Tina D. Dolidze, and Rudi van Eldik

Phys. Rev. E 80, 065101(R) (2009) - Published 4 December, 2009

RAPID COMMUNICATION

Model for non-Gaussian intraday stock returns

Austin Gerig, Javier Vicente, and Miguel A. Fuentes

Phys. Rev. E 80, 065102(R) (2009) - Published 10 December, 2009

RAPID COMMUNICATION

Models of electrolyte solutions from molecular descriptions: The example of NaCl solutions

John Jairo Molina, Jean-François Dufrêche, Mathieu Salanne, Olivier Bernard, Marie Jardat, and Pierre Turq

Phys. Rev. E 80, 065103(R) (2009) - Published 29 December, 2009

RAPID COMMUNICATION

Global mean first-passage times of random walks on complex networks

V. Tejedor, O. Bénichou, and R. Voituriez

Phys. Rev. E 80, 065104(R) (2009) - Published 29 December, 2009

RAPID COMMUNICATION

Nonlinear elasticity of the phase-field crystal model from the renormalization group

Pak Yuen Chan and Nigel Goldenfeld

Phys. Rev. E 80, 065105(R) (2009) - Published 30 December, 2009

Chaos and pattern formation

RAPID COMMUNICATION

Wigner surmise for Hermitian and non-Hermitian chiral random matrices

G. Akemann, E. Bittner, M. J. Phillips, and L. Shifrin

Phys. Rev. E 80, 065201(R) (2009) - Published 3 December, 2009

RAPID COMMUNICATION

Zero-refractoriness spirals in phase-coupled excitable media

E. Ávalos, Pik-Yin Lai, and C. K. Chan

Phys. Rev. E 80, 065202(R) (2009) - Published 4 December, 2009

RAPID COMMUNICATION

Dual-mode spiral vortices

Yair Mau, Aric Hagberg, and Ehud Meron

Phys. Rev. E 80, 065203(R) (2009) - Published 8 December, 2009

RAPID COMMUNICATION

Partial time-delay coupling enlarges death island of coupled oscillators

Wei Zou and Meng Zhan

Phys. Rev. E 80, 065204(R) (2009) - Published 16 December, 2009

Fluid dynamics

RAPID COMMUNICATION

Induced agitation in homogeneous bubbly flows at moderate particle Reynolds number

Alain Cartellier, Marcelo Andreotti, and Philippe Sechet

Phys. Rev. E 80, 065301(R) (2009) - Published 17 December, 2009

RAPID COMMUNICATION

Water wave collapses over quasi-one-dimensional nonuniformly periodic bed profiles

V. P. Ruban

Phys. Rev. E 80, 065302(R) (2009) - Published 30 December, 2009

Plasma physics

RAPID COMMUNICATION

Experimental study of a planar atmospheric-pressure plasma operating in the microplasma regime

A. J. Wagner, D. Mariotti, K. J. Yurchenko, and T. K. Das

Phys. Rev. E 80, 065401(R) (2009) - Published 15 December, 2009

ARTICLES

Interdisciplinary physics

Largest Laplacian eigenvalue predicts the emergence of costly punishment in the evolutionary ultimatum game on networks

Xiang Li and Lang Cao

Phys. Rev. E 80, 066101 (2009) - Published 1 December, 2009

Market impact and trading profile of hidden orders in stock markets

Esteban Moro, Javier Vicente, Luis G. Moyano, Austin Gerig, J. Doyne Farmer, Gabriella Vaglica, Fabrizio Lillo, and Rosario N. Mantegna

Phys. Rev. E 80, 066102 (2009) - Published 1 December, 2009

Inferring the background traffic arrival process in the Internet

Péter Hága, István Csabai, and Gábor Vattay

Phys. Rev. E 80, 066103 (2009) - Published 3 December, 2009

Deriving dynamical models from paleoclimatic records: Application to glacial millennial-scale climate variability

Frank Kwasniok and Gerrit Lohmann

Phys. Rev. E 80, 066104 (2009) - Published 3 December, 2009

Rank-dependent deactivation in network evolution

Xin-Jian Xu and Ming-Chen Zhou

Phys. Rev. E 80, 066105 (2009) - Published 7 December, 2009

Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials

Samuel A. Isaacson and David Isaacson

Phys. Rev. E 80, 066106 (2009) - Published 7 December, 2009

Axelrod models of social influence with cultural repulsion

Alejandro Radillo-Díaz, Luis A. Pérez, and Marcelo del Castillo-Mussot

Phys. Rev. E 80, 066107 (2009) - Published 8 December, 2009

Communities of solutions in single solution clusters of a random K-satisfiability formula

Haijun Zhou and Hui Ma

Phys. Rev. E 80, 066108 (2009) - Published 9 December, 2009

Nucleation of cracks in a brittle sheet

Cristiano L. Dias, Jens Kröger, Daniel Vernon, and Martin Grant

Phys. Rev. E 80, 066109 (2009) - Published 11 December, 2009

Pheromone routing protocol on a scale-free network

Xiang Ling, Mao-Bin Hu, Rui Jiang, Ruili Wang, Xian-Bin Cao, and Qing-Song Wu

Phys. Rev. E 80, 066110 (2009) - Published 11 December, 2009

Regulating synchronous states of complex networks by pinning interaction with an external node

J. A. Almendral, I. Sendiña-Nadal, D. Yu, I. Leyva, and S. Boccaletti

Phys. Rev. E 80, 066111 (2009) - Published 14 December, 2009

Evolutionary dynamics on networks of selectively neutral genotypes: Effects of topology and sequence stability

Jacobo Aguirre, Javier M. Buldú, and Susanna C. Manrubia

Phys. Rev. E 80, 066112 (2009) - Published 14 December, 2009

Stick-slip instabilities and shear strain localization in amorphous materials

Eric G. Daub and Jean M. Carlson

Phys. Rev. E 80, 066113 (2009) - Published 15 December, 2009

X-ray tomography of a crumpled plastoelastic thin sheet

Yen-Chih Lin, Ji-Ming Sun, H. W. Yang, Yeukuang Hwu, C. L. Wang, and Tzay-Ming Hong

Phys. Rev. E 80, 066114 (2009) - Published 16 December, 2009

Time-dependent fiber bundles with local load sharing. II. General Weibull fibers

S. Leigh Phoenix and William I. Newman

Phys. Rev. E 80, 066115 (2009) - Published 17 December, 2009

Collectively optimal routing for congested traffic limited by link capacity

Bogdan Danila, Yudong Sun, and Kevin E. Bassler

Phys. Rev. E 80, 066116 (2009) - Published 17 December, 2009

Dynamic quantum clustering: A method for visual exploration of structures in data

Marvin Weinstein and David Horn

Phys. Rev. E 80, 066117 (2009) - Published 17 December, 2009

Statistical mechanics of the “Chinese restaurant process”: Lack of self-averaging, anomalous finite-size effects, and condensation

Bruno Bassetti, Mina Zarei, Marco Cosentino Lagomarsino, and Ginestra Bianconi

Phys. Rev. E 80, 066118 (2009) - Published 22 December, 2009

Opinion and community formation in coevolving networks

Gerardo Iñiguez, János Kertész, Kimmo K. Kaski, and R. A. Barrio

Phys. Rev. E 80, 066119 (2009) - Published 23 December, 2009

Synchronization in symmetric bipolar population networks

Lubos Buzna, Sergi Lozano, and Albert Díaz-Guilera

Phys. Rev. E 80, 066120 (2009) - Published 23 December, 2009

Consensus over directed static networks with arbitrary finite communication delays

Jianquan Lu, Daniel W. C. Ho, and Jürgen Kurths

Phys. Rev. E 80, 066121 (2009) - Published 23 December, 2009

Scaling of human behavior during portal browsing

Anna Chmiel, Kamila Kowalska, and Janusz A. Hołyst

Phys. Rev. E 80, 066122 (2009) - Published 23 December, 2009

Debris and 1/f noise in sliding friction dynamics under wear conditions

I. Vragovic, J. M. Molina, R. Prieto, M. Duarte, J. Narciso, and E. Louis

Phys. Rev. E 80, 066123 (2009) - Published 31 December, 2009

Chaos and pattern formation

Disordered plane waves in the transition between target and antitarget patterns

Xujin Yuan, Xiaochuan Lu, Hongli Wang, and Qi Ouyang

Phys. Rev. E 80, 066201 (2009) - Published 3 December, 2009

Phase synchronization of inhibitory bursting neurons induced by distributed time delays in chemical coupling

Xiaoming Liang, Ming Tang, Mukeshwar Dhamala, and Zonghua Liu

Phys. Rev. E 80, 066202 (2009) - Published 7 December, 2009

Delay-induced spatial correlations in one-dimensional stochastic networks with nearest-neighbor coupling

Andrey Pototsky and Natalia B. Janson

Phys. Rev. E 80, 066203 (2009) - Published 8 December, 2009

Instabilities of a three-dimensional localized spot

Marcin Leda, Vladimir K. Vanag, and Irving R. Epstein

Phys. Rev. E 80, 066204 (2009) - Published 10 December, 2009

Space-time properties of Gram-Schmidt vectors in classical Hamiltonian evolution

Jason R. Green, Julius Jellinek, and R. Stephen Berry

Phys. Rev. E 80, 066205 (2009) - Published 14 December, 2009

Reconstruction of time-delay systems using small impulsive disturbances

M. D. Prokhorov and V. I. Ponomarenko

Phys. Rev. E 80, 066206 (2009) - Published 16 December, 2009

Modified periodogram method for estimating the Hurst exponent of fractional Gaussian noise

Yingjun Liu, Yong Liu, Kun Wang, Tianzi Jiang, and Lihua Yang

Phys. Rev. E 80, 066207 (2009) - Published 17 December, 2009

Estimating structure of multivariate systems with genetic algorithms for nonlinear prediction

Tomoya Suzuki, Yuta Ueoka, and Haruki Sato

Phys. Rev. E 80, 066208 (2009) - Published 17 December, 2009

Multiplexed encryption using chaotic systems with multiple stochastic-delayed feedbacks

D. Rontani, M. Sciamanna, A. Locquet, and D. S. Citrin

Phys. Rev. E 80, 066209 (2009) - Published 21 December, 2009

Friedel oscillations in microwave billiards

A. Bäcker, B. Dietz, T. Friedrich, M. Miski-Oglu, A. Richter, F. Schäfer, and S. Tomsovic

Phys. Rev. E 80, 066210 (2009) - Published 22 December, 2009

Accumulation of unstable periodic orbits and the stickiness in the two-dimensional piecewise linear map

A. Akaishi and A. Shudo

Phys. Rev. E 80, 066211 (2009) - Published 23 December, 2009

Maximal width of the separatrix chaotic layer

S. M. Soskin and R. Mannella

Phys. Rev. E 80, 066212 (2009) - Published 29 December, 2009

Learning-rate-dependent clustering and self-development in a network of coupled phase oscillators

Ritwik K. Niyogi and L. Q. English

Phys. Rev. E 80, 066213 (2009) - Published 30 December, 2009

Fluid dynamics

Power-law distributions of particle concentration in free-surface flows

Jason Larkin, M. M. Bandi, Alain Pumir, and Walter I. Goldburg

Phys. Rev. E 80, 066301 (2009) - Published 2 December, 2009

Spectral analysis of the weighted Laplacian in slip and no-slip flows

M. Giona, A. Adrover, and S. Cerbelli

Phys. Rev. E 80, 066302 (2009) - Published 3 December, 2009

Helical magnetorotational instability in a Taylor-Couette flow with strongly reduced Ekman pumping

Frank Stefani, Gunter Gerbeth, Thomas Gundrum, Rainer Hollerbach, Jānis Priede, Günther Rüdiger, and Jacek Szklarski

Phys. Rev. E 80, 066303 (2009) - Published 4 December, 2009

Noise-controlled pattern formation and threshold shift for electroconvection in the conduction and dielectric regimes

Jong-Hoon Huh, Akiyuki Kuribayashi, and Shoichi Kai

Phys. Rev. E 80, 066304 (2009) - Published 7 December, 2009

Transition between Kelvin’s equilibria

Hamid Ait Abderrahamne, Kamran Siddiqui, and Georgios H. Vatistas

Phys. Rev. E 80, 066305 (2009) - Published 10 December, 2009

Experimental investigation of the onset of instability in a radial Hele-Shaw cell

L. M. Martyushev, A. I. Birzina, M. S. Konovalov, and A. P. Sergeev

Phys. Rev. E 80, 066306 (2009) - Published 10 December, 2009

Near-wake structure behind two circular cylinders in a side-by-side configuration with heat release

S. Kumar, G. Laughlin, and C. Cantu

Phys. Rev. E 80, 066307 (2009) - Published 10 December, 2009

Nonlinear defects separating spiral waves in Taylor-Couette flow

Ch. Hoffmann, M. Heise, S. Altmeyer, J. Abshagen, A. Pinter, G. Pfister, and M. Lücke

Phys. Rev. E 80, 066308 (2009) - Published 11 December, 2009

Steady dynamics of exothermic chemical wave fronts in van der Waals fluids

G. Dumazer, C. Antoine, A. Lemarchand, and B. Nowakowski

Phys. Rev. E 80, 066309 (2009) - Published 14 December, 2009

Analog of astrophysical magnetorotational instability in a Couette-Taylor flow of polymer fluids

Stanislav Boldyrev, Don Huynh, and Vladimir Pariev

Phys. Rev. E 80, 066310 (2009) - Published 15 December, 2009

Diffusive behavior of a thin particle layer in fluid by hydrodynamic interaction

Shusaku Harada and Ryoko Otomo

Phys. Rev. E 80, 066311 (2009) - Published 15 December, 2009

Inertial particle collisions in turbulent synthetic flows: Quantifying the sling effect

Lauris Ducasse and Alain Pumir

Phys. Rev. E 80, 066312 (2009) - Published 16 December, 2009

Scale-similarity model for Lagrangian velocity correlations in isotropic and stationary turbulence

Guo-Wei He, Guodong Jin, and Xin Zhao

Phys. Rev. E 80, 066313 (2009) - Published 21 December, 2009

Acoustic waveform of continuous bubbling in a non-Newtonian fluid

Valérie Vidal, Mie Ichihara, Maurizio Ripepe, and Kei Kurita

Phys. Rev. E 80, 066314 (2009) - Published 23 December, 2009

Nonperturbative quasilinear approach to the shear dynamo problem

S. Sridhar and Kandaswamy Subramanian

Phys. Rev. E 80, 066315 (2009) - Published 23 December, 2009

Flow lines and mixing within drops in microcapillaries

François Blanchette

Phys. Rev. E 80, 066316 (2009) - Published 28 December, 2009

Effects of rarefaction in microflows between coaxial cylinders

Peyman Taheri and Henning Struchtrup

Phys. Rev. E 80, 066317 (2009) - Published 28 December, 2009

Velocity-gradient statistics along particle trajectories in turbulent flows: The refined similarity hypothesis in the Lagrangian frame

Roberto Benzi, Luca Biferale, Enrico Calzavarini, Detlef Lohse, and Federico Toschi

Phys. Rev. E 80, 066318 (2009) - Published 29 December, 2009

Finite-dimensional turbulence of planetary waves

Victor S. L’vov, Anna Pomyalov, Itamar Procaccia, and Oleksii Rudenko

Phys. Rev. E 80, 066319 (2009) - Published 30 December, 2009

Plasma physics

Energetic ion, atom, and molecule reactions and excitation in low-current H2 discharges: Hα Doppler profiles

Z. Lj. Petrović and A. V. Phelps

Phys. Rev. E 80, 066401 (2009) - Published 2 December, 2009

Plasma thermal effect on the relativistic current-filamentation and two-stream instabilities in a hot-beam warm-plasma system

Biao Hao, W.-J. Ding, Z.-M. Sheng, C. Ren, and J. Zhang

Phys. Rev. E 80, 066402 (2009) - Published 2 December, 2009

Laser-driven plasma waves in capillary tubes

F. Wojda, K. Cassou, G. Genoud, M. Burza, Y. Glinec, O. Lundh, A. Persson, G. Vieux, E. Brunetti, R. P. Shanks, D. Jaroszynski, N. E. Andreev, C.-G. Wahlström, and B. Cros

Phys. Rev. E 80, 066403 (2009) - Published 4 December, 2009

Asymmetry-driven structure formation in pair plasmas

S. M. Mahajan, N. L. Shatashvili, and V. I. Berezhiani

Phys. Rev. E 80, 066404 (2009) - Published 11 December, 2009

Theoretical description of Coulomb balls: Fluid phase

J. Wrighton, J. W. Dufty, H. Kählert, and M. Bonitz

Phys. Rev. E 80, 066405 (2009) - Published 14 December, 2009

Evolution of elastic x-ray scattering in laser-shocked warm dense lithium

N. L. Kugland, G. Gregori, S. Bandyopadhyay, C. M. Brenner, C. R. D. Brown, C. Constantin, S. H. Glenzer, F. Y. Khattak, A. L. Kritcher, C. Niemann, A. Otten, J. Pasley, A. Pelka, M. Roth, C. Spindloe, and D. Riley

Phys. Rev. E 80, 066406 (2009) - Published 17 December, 2009

Physical interpretation of the quantum two-stream instability

F. Haas, A. Bret, and P. K. Shukla

Phys. Rev. E 80, 066407 (2009) - Published 18 December, 2009

Analytical description for field-line wandering in strong magnetic turbulence

A. Shalchi, J. A. le Roux, G. M. Webb, and G. P. Zank

Phys. Rev. E 80, 066408 (2009) - Published 31 December, 2009

Classical physics

Localized breathing modes in granular crystals with defects

G. Theocharis, M. Kavousanakis, P. G. Kevrekidis, Chiara Daraio, Mason A. Porter, and I. G. Kevrekidis

Phys. Rev. E 80, 066601 (2009) - Published 1 December, 2009

Bremsstrahlung by a rapidly accelerating point charge

Daniel Egaña and Iván Schmidt

Phys. Rev. E 80, 066602 (2009) - Published 2 December, 2009

Ginzburg-Landau equation for dynamical four-wave mixing in gain nonlinear media with relaxation

Svitlana Bugaychuk and Robert Conte

Phys. Rev. E 80, 066603 (2009) - Published 7 December, 2009

Generation of pulse trains in nonlinear optical fibers through the generalized complex Ginzburg-Landau equation

Camus G. Latchio Tiofack, Alidou Mohamadou, Timoléon C. Kofané, and Alain B. Moubissi

Phys. Rev. E 80, 066604 (2009) - Published 10 December, 2009

Emergence of deterministic Green’s functions from noise generated by finite random sources

Oleg A. Godin

Phys. Rev. E 80, 066605 (2009) - Published 15 December, 2009

Nearly resonant multidimensional systems under a transient perturbative interaction

Antonia Ruiz, José P. Palao, and Eric J. Heller

Phys. Rev. E 80, 066606 (2009) - Published 23 December, 2009

Electrorotation of a leaky dielectric spheroid immersed in a viscous fluid

Yu. Dolinsky and T. Elperin

Phys. Rev. E 80, 066607 (2009) - Published 31 December, 2009

Bound vector solitons and soliton complexes for the coupled nonlinear Schrödinger equations

Zhi-Yuan Sun, Yi-Tian Gao, Xin Yu, Wen-Jun Liu, and Ying Liu

Phys. Rev. E 80, 066608 (2009) - Published 31 December, 2009

Computational physics

First-passage kinetic Monte Carlo method

Tomas Oppelstrup, Vasily V. Bulatov, Aleksandar Donev, Malvin H. Kalos, George H. Gilmer, and Babak Sadigh

Phys. Rev. E 80, 066701 (2009) - Published 1 December, 2009

Path-integral–expanded-ensemble Monte Carlo method in treatment of the sign problem for fermions

M. A. Voznesenskiy, P. N. Vorontsov-Velyaminov, and A. P. Lyubartsev

Phys. Rev. E 80, 066702 (2009) - Published 3 December, 2009

Algorithm for rigid-body Brownian dynamics

Dan Gordon, Matthew Hoyles, and Shin-Ho Chung

Phys. Rev. E 80, 066703 (2009) - Published 4 December, 2009

Finite-element approach to Brownian dynamics of polymers

Christian J. Cyron and Wolfgang A. Wall

Phys. Rev. E 80, 066704 (2009) - Published 9 December, 2009

Properties of quantum systems via diagonalization of transition amplitudes. I. Discretization effects

Ivana Vidanović, Aleksandar Bogojević, and Aleksandar Belić

Phys. Rev. E 80, 066705 (2009) - Published 18 December, 2009

Properties of quantum systems via diagonalization of transition amplitudes. II. Systematic improvements of short-time propagation

Ivana Vidanović, Aleksandar Bogojević, Antun Balaž, and Aleksandar Belić

Phys. Rev. E 80, 066706 (2009) - Published 18 December, 2009

Graphics processing unit implementation of lattice Boltzmann models for flowing soft systems

Massimo Bernaschi, Ludovico Rossi, Roberto Benzi, Mauro Sbragaglia, and Sauro Succi

Phys. Rev. E 80, 066707 (2009) - Published 30 December, 2009

BRIEF REPORTS

Chaos and pattern formation

Using ergodicity of chaotic systems for improving the global properties of the delayed feedback control method

Kestutis Pyragas and Viktoras Pyragas

Phys. Rev. E 80, 067201 (2009) - Published 1 December, 2009

FEATURED IN PHYSICS

Ubiquity of chaotic magnetic-field lines generated by three-dimensionally crossed wires in modern electric circuits

M. Hosoda, T. Miyaguchi, K. Imagawa, and K. Nakamura

Phys. Rev. E 80, 067202 (2009) - Published 21 December, 2009

Fluid dynamics

Evidence for internal structures of spiral turbulence

S. Dong

Phys. Rev. E 80, 067301 (2009) - Published 22 December, 2009

Plasma physics

Structure of laboratory ball lightning

Tsuyohito Ito, Tomoya Tamura, Mark A. Cappelli, and Satoshi Hamaguchi

Phys. Rev. E 80, 067401 (2009) - Published 7 December, 2009

Computational physics

Entropy balance and dispersive oscillations in lattice Boltzmann models

Dave Packwood

Phys. Rev. E 80, 067701 (2009) - Published 3 December, 2009

ERRATA

Publisher's Note: Dynamic effective mass of granular media and the attenuation of structure-borne sound [Phys. Rev. E 80, 051304 (2009)]

John Valenza, Chaur-Jian Hsu, Rohit Ingale, Nicolas Gland, Hernán A. Makse, and David Linton Johnson

Phys. Rev. E 80, 069901 (2009) - Published 7 December, 2009

Erratum: Coupling-induced oscillations in overdamped bistable systems [Phys. Rev. E 68, 045102 (2003)]

Visarath In, Adi R. Bulsara, Antonio Palacios, Patrick Longhini, Andy Kho, and Joseph D. Neff

Phys. Rev. E 80, 069902 (2009) - Published 10 December, 2009

Publisher's Note: Communities of solutions in single solution clusters of a random K-satisfiability formula [Phys. Rev. E 80, 066108 (2009)]

Haijun Zhou and Hui Ma

Phys. Rev. E 80, 069903 (2009) - Published 15 December, 2009

Erratum: Two- and three-dimensional magnetic reconnection observed in the Eulerian-Lagrangian analysis of magnetohydrodynamics equations [Phys. Rev. E 78, 066315 (2008)]

K. Ohkitani and P. Constantin

Phys. Rev. E 80, 069904 (2009) - Published 17 December, 2009

Publisher's Note: Data-driven approach to decomposing complex enzyme kinetics with surrogate models [Phys. Rev. E 80, 061118 (2009)]

Christopher P. Calderon

Phys. Rev. E 80, 069905 (2009) - Published 18 December, 2009

Erratum: Photogeneration of electrons in dust clouds in near space [Phys. Rev. E 79, 046407 (2009)]

Mahendra Singh Sodha, Amrit Dixit, and Sweta Srivastava

Phys. Rev. E 80, 069906 (2009) - Published 21 December, 2009

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