Volume 76, Issue 1

July 2007

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RAPID COMMUNICATIONS

Statistical physics

RAPID COMMUNICATION

Epidemic size and probability in populations with heterogeneous infectivity and susceptibility

Joel C. Miller

Phys. Rev. E 76, 010101(R) (2007) - Published 10 July, 2007

RAPID COMMUNICATION

Time-dependent couplings and crossover length scales in nonequilibrium surface roughening

Marc Pradas, Juan M. López, and A. Hernández-Machado

Phys. Rev. E 76, 010102(R) (2007) - Published 11 July, 2007

RAPID COMMUNICATION

Phase transition in a stochastic prime-number generator

Bartolo Luque, Lucas Lacasa, and Octavio Miramontes

Phys. Rev. E 76, 010103(R) (2007) - Published 18 July, 2007

Colloidal dispersions, suspensions, and aggregates

RAPID COMMUNICATION

Slow dynamics and aging in colloidal gels studied by x-ray photon correlation spectroscopy

Andrei Fluerasu, Abdellatif Moussaïd, Anders Madsen, and Andrew Schofield

Phys. Rev. E 76, 010401(R) (2007) - Published 2 July, 2007

RAPID COMMUNICATION

Reversible clustering under the influence of a periodically modulated binding rate

Ronny Straube and Martin Falcke

Phys. Rev. E 76, 010402(R) (2007) - Published 26 July, 2007

Structured and complex fluids

RAPID COMMUNICATION

Simulations of dynamics and viscoelasticity in highly entangled solutions of semiflexible rods

Shriram Ramanathan and David C. Morse

Phys. Rev. E 76, 010501(R) (2007) - Published 6 July, 2007

Polymers

RAPID COMMUNICATION

Polymer translocation through a nanopore: A showcase of anomalous diffusion

J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis

Phys. Rev. E 76, 010801(R) (2007) - Published 13 July, 2007

Biological physics

RAPID COMMUNICATION

Solution of an infection model near threshold

David A. Kessler and Nadav M. Shnerb

Phys. Rev. E 76, 010901(R) (2007) - Published 16 July, 2007

ARTICLES

Statistical physics

Phase diagram of the 1-in-3 satisfiability problem

Jack Raymond, Andrea Sportiello, and Lenka Zdeborová

Phys. Rev. E 76, 011101 (2007) - Published 2 July, 2007

Cavity approximation for graphical models

T. Rizzo, B. Wemmenhove, and H. J. Kappen

Phys. Rev. E 76, 011102 (2007) - Published 3 July, 2007

Invaded cluster algorithm for a tricritical point in a diluted Potts model

I. Balog and K. Uzelac

Phys. Rev. E 76, 011103 (2007) - Published 3 July, 2007

Ehrenfest urn revisited: Playing the game on a realistic fluid model

Enrico Scalas, Edgar Martin, and Guido Germano

Phys. Rev. E 76, 011104 (2007) - Published 6 July, 2007

Spin-dynamics simulations of the $X Y$ vector Blume-Emery-Griffiths model in three dimensions

J. A. Plascak, Shan-Ho Tsai, and D. P. Landau

Phys. Rev. E 76, 011105 (2007) - Published 9 July, 2007

Inferring Markov chains: Bayesian estimation, model comparison, entropy rate, and out-of-class modeling

Christopher C. Strelioff, James P. Crutchfield, and Alfred W. Hübler

Phys. Rev. E 76, 011106 (2007) - Published 12 July, 2007

Scaling of Hamiltonian walks on fractal lattices

Sunčica Elezović-Hadžić, Dušanka Marčetić, and Slobodan Maletić

Phys. Rev. E 76, 011107 (2007) - Published 12 July, 2007

Parameter-dependent thermal conductivity of one-dimensional $ϕ^{4}$ lattice

Nianbei Li and Baowen Li

Phys. Rev. E 76, 011108 (2007) - Published 13 July, 2007

Numerical method for solving stochastic differential equations with Poissonian white shot noise

Changho Kim, Eok Kyun Lee, Peter Hänggi, and Peter Talkner

Phys. Rev. E 76, 011109 (2007) - Published 13 July, 2007

Rigorous confidence intervals for critical probabilities

Oliver Riordan and Mark Walters

Phys. Rev. E 76, 011110 (2007) - Published 17 July, 2007

Quantum mechanical heat transport in disordered harmonic chains

Christopher Gaul and Helmut Büttner

Phys. Rev. E 76, 011111 (2007) - Published 17 July, 2007

Motion of a colloidal particle in an optical trap

Branimir Lukić, Sylvia Jeney, Željko Sviben, Andrzej J. Kulik, Ernst-Ludwig Florin, and László Forró

Phys. Rev. E 76, 011112 (2007) - Published 19 July, 2007

Generalized Casimir forces in nonequilibrium systems

R. Brito, U. Marini Bettolo Marconi, and R. Soto

Phys. Rev. E 76, 011113 (2007) - Published 19 July, 2007

Fluctuation-dissipation relation for stochastic dynamics without detailed balance

Mário J. de Oliveira

Phys. Rev. E 76, 011114 (2007) - Published 19 July, 2007

Inference and optimization of real edges on sparse graphs: A statistical physics perspective

K. Y. Michael Wong and David Saad

Phys. Rev. E 76, 011115 (2007) - Published 20 July, 2007

Gravitational dynamics of an infinite shuffled lattice: Particle coarse-graining, nonlinear clustering, and the continuum limit

T. Baertschiger, M. Joyce, A. Gabrielli, and F. Sylos Labini

Phys. Rev. E 76, 011116 (2007) - Published 23 July, 2007

Projected single-spin-flip dynamics in the Ising model

A. L. C. Ferreira and Raúl Toral

Phys. Rev. E 76, 011117 (2007) - Published 23 July, 2007

Non-Markovian approach to globally coupled excitable systems

T. Prager, M. Falcke, L. Schimansky-Geier, and M. A. Zaks

Phys. Rev. E 76, 011118 (2007) - Published 24 July, 2007

Supercritical series expansion for the contact process in heterogeneous and disordered environments

C. J. Neugebauer and S. N. Taraskin

Phys. Rev. E 76, 011119 (2007) - Published 24 July, 2007

Critical behavior of the particle mass spectra in a family of gelling systems

A. A. Lushnikov

Phys. Rev. E 76, 011120 (2007) - Published 25 July, 2007

Interplay of critical Casimir and dispersion forces

Daniel Dantchev, Frank Schlesener, and S. Dietrich

Phys. Rev. E 76, 011121 (2007) - Published 26 July, 2007

Return times for stochastic processes with power-law scaling

Piero Olla

Phys. Rev. E 76, 011122 (2007) - Published 27 July, 2007

State-dependent diffusion: Thermodynamic consistency and its path integral formulation

A. W. C. Lau and T. C. Lubensky

Phys. Rev. E 76, 011123 (2007) - Published 27 July, 2007

Diffusion in channeled structures. III. Quantum corrections induced by lattice vibrations

Benoit Palmieri and David Ronis

Phys. Rev. E 76, 011124 (2007) - Published 27 July, 2007

Diffusion process with two reflecting barriers in a time-dependent potential

Elisabeth Mayr, Michael Schulz, Peter Reineker, Thomas Pletl, and Petr Chvosta

Phys. Rev. E 76, 011125 (2007) - Published 30 July, 2007

Statistical behavior of domain systems

Diego Luis González and Gabriel Téllez

Phys. Rev. E 76, 011126 (2007) - Published 31 July, 2007

Shocks in asymmetric simple exclusion processes of interacting particles

Sutapa Mukherji

Phys. Rev. E 76, 011127 (2007) - Published 31 July, 2007

Fluctuations of the partial filling factors in competitive random sequential adsorption from binary mixtures

Arsen V. Subashiev and Serge Luryi

Phys. Rev. E 76, 011128 (2007) - Published 31 July, 2007

Equilibrium and linear transport properties of fluids

Entropy, local order, and the freezing transition in Morse liquids

Somendra Nath Chakraborty and Charusita Chakravarty

Phys. Rev. E 76, 011201 (2007) - Published 13 July, 2007

Self-consistent molecular dynamics formulation for electric-field-mediated electrolyte transport through nanochannels

A. V. Raghunathan and N. R. Aluru

Phys. Rev. E 76, 011202 (2007) - Published 17 July, 2007

Granular materials

Force transmission in a packing of pentagonal particles

Emilien Azéma, Farhang Radjaï, Robert Peyroux, and Gilles Saussine

Phys. Rev. E 76, 011301 (2007) - Published 13 July, 2007

Colloidal dispersions, suspensions, and aggregates

Low temperature behavior and glass line in the symmetrical colloidal electrolyte

Jose B. Caballero and Antonio M. Puertas

Phys. Rev. E 76, 011401 (2007) - Published 10 July, 2007

Effective nonadditive pair potential for lock-and-key interacting particles: The role of the limited valence

Julio Largo, Piero Tartaglia, and Francesco Sciortino

Phys. Rev. E 76, 011402 (2007) - Published 13 July, 2007

Fundamental-measure density functional for the fluid of aligned hard hexagons: Further insights in fundamental measure theory

José A. Capitán and José A. Cuesta

Phys. Rev. E 76, 011403 (2007) - Published 18 July, 2007

Evidence of the early stage of porphyrin aggregation by enhanced Raman scattering and fluorescence spectroscopy

Norberto Micali, Valentina Villari, Andrea Romeo, Maria Angela Castriciano, and Luigi Monsù Scolaro

Phys. Rev. E 76, 011404 (2007) - Published 18 July, 2007

Formation of magnetic filaments: A kinetic study

F. Martínez-Pedrero, M. Tirado-Miranda, A. Schmitt, and J. Callejas-Fernández

Phys. Rev. E 76, 011405 (2007) - Published 18 July, 2007

Physical age of soft-jammed systems

G. Ovarlez and P. Coussot

Phys. Rev. E 76, 011406 (2007) - Published 19 July, 2007

Density scaling laws for the structure of granular deposits

Daniel Rodríguez-Pérez, Jose L. Castillo, and J. Carlos Antoranz

Phys. Rev. E 76, 011407 (2007) - Published 25 July, 2007

Aggregation of liposomes in presence of ${La}^{3 +}$ : A study of the fractal dimension

Juan Sabín, Gerardo Prieto, Juan M. Ruso, Paula Messina, and Félix Sarmiento

Phys. Rev. E 76, 011408 (2007) - Published 30 July, 2007

Incoherent light transport in an anisotropic random medium: A probe of human erythrocyte aggregation and deformation

C. Baravian, F. Caton, J. Dillet, G. Toussaint, and P. Flaud

Phys. Rev. E 76, 011409 (2007) - Published 31 July, 2007

Structured and complex fluids

Charging dynamics of the electric double layer in porous media

Hidetsugu Sakaguchi and Reisei Baba

Phys. Rev. E 76, 011501 (2007) - Published 2 July, 2007

Do short-time fluctuations predict the long-time dynamic heterogeneity in a supercooled liquid?

J. A. Rodriguez Fris, L. M. Alarcón, and G. A. Appignanesi

Phys. Rev. E 76, 011502 (2007) - Published 2 July, 2007

Evidence for three-dimensional unstable flows in shear-banding wormlike micelles

Lydiane Bécu, Domitille Anache, Sébastien Manneville, and Annie Colin

Phys. Rev. E 76, 011503 (2007) - Published 5 July, 2007

Characterization of the potential energy landscape of an antiplasticized polymer

Robert A. Riggleman, Jack F. Douglas, and Juan J. de Pablo

Phys. Rev. E 76, 011504 (2007) - Published 6 July, 2007

Ultraslow relaxation of hydrogen-bonded dynamic clusters in glass-forming aqueous glucose solutions: A light scattering study

D. L. Sidebottom

Phys. Rev. E 76, 011505 (2007) - Published 10 July, 2007

Small-angle x-ray scattering measurements of the microstructure of liquid helium mixtures adsorbed in aerogel

L. B. Lurio, N. Mulders, M. Paetkau, M. H. W. Chan, and S. G. J. Mochrie

Phys. Rev. E 76, 011506 (2007) - Published 12 July, 2007

Revisiting the slow dynamics of a silica melt using Monte Carlo simulations

Ludovic Berthier

Phys. Rev. E 76, 011507 (2007) - Published 16 July, 2007

Dynamic glass transition in two dimensions

M. Bayer, J. M. Brader, F. Ebert, M. Fuchs, E. Lange, G. Maret, R. Schilling, M. Sperl, and J. P. Wittmer

Phys. Rev. E 76, 011508 (2007) - Published 20 July, 2007

Analysis of a heterodyne-detected transient-grating experiment on a molecular supercooled liquid. I. Basic formulation of the problem

A. Azzimani, C. Dreyfus, R. M. Pick, P. Bartolini, A. Taschin, and R. Torre

Phys. Rev. E 76, 011509 (2007) - Published 24 July, 2007

Analysis of a heterodyne-detected transient-grating experiment on a molecular supercooled liquid. II. Application to $m$ -toluidine

A. Azzimani, C. Dreyfus, R. M. Pick, P. Bartolini, A. Taschin, and R. Torre

Phys. Rev. E 76, 011510 (2007) - Published 24 July, 2007

Model energy landscapes of low-temperature fluids: Dipolar hard spheres

Dmitry V. Matyushov

Phys. Rev. E 76, 011511 (2007) - Published 24 July, 2007

Scaling behavior in corrosion and growth of a passive film

F. D. A. Aarão Reis and Janusz Stafiej

Phys. Rev. E 76, 011512 (2007) - Published 24 July, 2007

Nucleation of lamellar domains from a sponge phase under shear flow: Shape selection of nuclei in a nonequilibrium steady state

Hideyuki Miyazawa and Hajime Tanaka

Phys. Rev. E 76, 011513 (2007) - Published 27 July, 2007

Route to calculate the length scale for the glass transition in polymers

D. Cangialosi, A. Alegría, and J. Colmenero

Phys. Rev. E 76, 011514 (2007) - Published 27 July, 2007

Films, interfaces, and crystal growth

Linear stability analysis for step meandering instabilities with elastic interactions and Ehrlich-Schwoebel barriers

Dong-Hee Yeon, Pil-Ryung Cha, John S. Lowengrub, Axel Voigt, and K. Thornton

Phys. Rev. E 76, 011601 (2007) - Published 11 July, 2007

Evaporatively driven morphological instability

Robert W. Style and J. S. Wettlaufer

Phys. Rev. E 76, 011602 (2007) - Published 16 July, 2007

Localization in disordered media, anomalous roughening, and coarsening dynamics of faceted surfaces

Ivan G. Szendro, Juan M. López, and Miguel A. Rodríguez

Phys. Rev. E 76, 011603 (2007) - Published 20 July, 2007

Crystal growth in a three-phase system: Diffusion and liquid-liquid phase separation in lysozyme crystal growth

M. C. R. Heijna, W. J. P. van Enckevort, and E. Vlieg

Phys. Rev. E 76, 011604 (2007) - Published 20 July, 2007

Contact lines for fluid surface adhesion

Markus Deserno, Martin Michael Müller, and Jemal Guven

Phys. Rev. E 76, 011605 (2007) - Published 26 July, 2007

Topological defects in the crystalline state of one-component plasmas of nonuniform density

A. Mughal and M. A. Moore

Phys. Rev. E 76, 011606 (2007) - Published 27 July, 2007

Surface instability of confined elastic bilayers: Theory and simulations

Gaurav Tomar, Ashutosh Sharma, Vijay Shenoy, and Gautam Biswas

Phys. Rev. E 76, 011607 (2007) - Published 30 July, 2007

Liquid crystals

Frustration in smectic layers of polar Gay-Berne systems

W. Józefowicz and L. Longa

Phys. Rev. E 76, 011701 (2007) - Published 11 July, 2007

Coupled director and polarization fluctuations in suspensions of ferroelectric nanoparticles in nematic liquid crystals

Martin Čopič, Alenka Mertelj, Olexandr Buchnev, and Yuri Reznikov

Phys. Rev. E 76, 011702 (2007) - Published 11 July, 2007

Stability of biaxial nematic phase for systems with variable molecular shape anisotropy

Lech Longa, Grzegorz Pająk, and Thomas Wydro

Phys. Rev. E 76, 011703 (2007) - Published 13 July, 2007

Possible model of an antiferroelectric twist grain boundary phase

J. G. Meier, M. Nobili, T. Carlsson, P. Rudquist, A. S. Petrenko, J. W. Goodby, M. Brunet, and S. T. Lagerwall

Phys. Rev. E 76, 011704 (2007) - Published 13 July, 2007

Influence of charge and flexibility on smectic phase formation in filamentous virus suspensions

Kirstin R. Purdy and Seth Fraden

Phys. Rev. E 76, 011705 (2007) - Published 17 July, 2007

Unconventional elasticity in smectic- $A$ elastomers

Olaf Stenull and T. C. Lubensky

Phys. Rev. E 76, 011706 (2007) - Published 18 July, 2007

Coulomb-like interaction in nematic emulsions induced by external torques exerted on the colloids

V. M. Pergamenshchik and V. O. Uzunova

Phys. Rev. E 76, 011707 (2007) - Published 19 July, 2007

Solitary wave propagation in antiferroelectric liquid crystal cells and the quadrupolar term in the interlayer interaction

Jang-Kun Song, Atsuo Fukuda, and J. K. Vij

Phys. Rev. E 76, 011708 (2007) - Published 20 July, 2007

Temperature-induced sign reversal of biaxiality observed by conoscopy in some ferroelectric $Sm − C^{*}$ liquid crystals

Jang-kun Song, A. D. L. Chandani, Atsuo Fukuda, J. K. Vij, Ichiro Kobayashi, and A. V. Emelyanenko

Phys. Rev. E 76, 011709 (2007) - Published 20 July, 2007

Poisson-bracket approach to the dynamics of bent-core molecules

William Kung and M. Cristina Marchetti

Phys. Rev. E 76, 011710 (2007) - Published 20 July, 2007

Waves at surfactant-laden liquid-liquid crystal interface

S. V. Lishchuk

Phys. Rev. E 76, 011711 (2007) - Published 20 July, 2007

Glassy orientational dynamics of rodlike molecules near the isotropic-nematic transition

Biman Jana, Dwaipayan Chakrabarti, and Biman Bagchi

Phys. Rev. E 76, 011712 (2007) - Published 25 July, 2007

Quantitative analysis of the x-ray diffraction intensities of undulated smectic phases in bent-core liquid crystals

C. L. Folcia, J. Ortega, and J. Etxebarria

Phys. Rev. E 76, 011713 (2007) - Published 25 July, 2007

Polymers

Translocation and insertion of an amphiphilic polymer

Satoshi Tsuchiya and Akihiko Matsuyama

Phys. Rev. E 76, 011801 (2007) - Published 2 July, 2007

Dynamic scattering of semirigid macromolecules

I. A. Nyrkova and A. N. Semenov

Phys. Rev. E 76, 011802 (2007) - Published 9 July, 2007

Intramolecular long-range correlations in polymer melts: The segmental size distribution and its moments

J. P. Wittmer, P. Beckrich, H. Meyer, A. Cavallo, A. Johner, and J. Baschnagel

Phys. Rev. E 76, 011803 (2007) - Published 12 July, 2007

Free energy and extension of a semiflexible polymer in cylindrical confining geometries

Yingzi Yang, Theodore W. Burkhardt, and Gerhard Gompper

Phys. Rev. E 76, 011804 (2007) - Published 19 July, 2007

DNA stretch during electrophoresis due to a step change in mobility

Patrick T. Underhill and Patrick S. Doyle

Phys. Rev. E 76, 011805 (2007) - Published 19 July, 2007

Static conformation and dynamics of single DNA molecules confined in nanoslits

Po-Keng Lin, Chi-Cheng Fu, Y.-L. Chen, Yan-Ru Chen, Pei-Kuen Wei, C. H. Kuan, and W. S. Fann

Phys. Rev. E 76, 011806 (2007) - Published 23 July, 2007

Molecular-dynamics simulation study of the glass transition in amorphous polymers with controlled chain stiffness

Monica Bulacu and Erik van der Giessen

Phys. Rev. E 76, 011807 (2007) - Published 26 July, 2007

Laser-induced structures in a polymer blend in the vicinity of the phase boundary

A. Voit, A. Krekhov, and W. Köhler

Phys. Rev. E 76, 011808 (2007) - Published 26 July, 2007

Coarse-graining intramolecular hydrodynamic interaction in dilute solutions of flexible polymers

R. Prabhakar, E. M. Sevick, and D. R. M. Williams

Phys. Rev. E 76, 011809 (2007) - Published 31 July, 2007

Molecular dynamics simulation of diffusion of gases in a carbon-nanotube–polymer composite

Seong Y. Lim, Muhammad Sahimi, Theodore T. Tsotsis, and Nayong Kim

Phys. Rev. E 76, 011810 (2007) - Published 31 July, 2007

Biological physics

Generalized theory of site-specific DNA-protein interactions

R. Murugan

Phys. Rev. E 76, 011901 (2007) - Published 2 July, 2007

Speed of reaction diffusion in embryogenesis

Karen M. Page, Nicholas A. M. Monk, and Philip K. Maini

Phys. Rev. E 76, 011902 (2007) - Published 5 July, 2007

Bending rigidity of mixed phospholipid bilayers and the equilibrium radius of corresponding vesicles

M. M. A. E. Claessens, B. F. van Oort, F. A. M. Leermakers, F. A. Hoekstra, and M. A. Cohen Stuart

Phys. Rev. E 76, 011903 (2007) - Published 11 July, 2007

Intermittent dynamics underlying the intrinsic fluctuations of the collective synchronization patterns in electrocortical activity

Pulin Gong, Andrey R. Nikolaev, and Cees van Leeuwen

Phys. Rev. E 76, 011904 (2007) - Published 11 July, 2007

Spiking synchronization of ion channel clusters on an axon

Shangyou Zeng, Yi Tang, and Peter Jung

Phys. Rev. E 76, 011905 (2007) - Published 11 July, 2007

Raman intensity and spectra predictions for cylindrical viruses

Eric C. Dykeman, Otto F. Sankey, and Kong-Thon Tsen

Phys. Rev. E 76, 011906 (2007) - Published 11 July, 2007

Dynamics of the Davydov-Scott monomer in a thermal bath: Comparison of the full quantum and semiclassical approaches

J. Cuevas, P. A. S. Silva, F. R. Romero, and L. Cruzeiro

Phys. Rev. E 76, 011907 (2007) - Published 12 July, 2007

Complex population dynamics as a competition between multiple-time-scale phenomena

Ioana Bena, Michel Droz, Janusz Szwabiński, and Andrzej Pȩkalski

Phys. Rev. E 76, 011908 (2007) - Published 16 July, 2007

Opening rates of DNA hairpins: Experiment and model

Jeungphill Hanne, Giovanni Zocchi, Nikolaos K. Voulgarakis, Alan R. Bishop, and Kim Ø. Rasmussen

Phys. Rev. E 76, 011909 (2007) - Published 16 July, 2007

Frustration, drift, and antiphase coupling in a neural array

Oliver Weihberger and Sonya Bahar

Phys. Rev. E 76, 011910 (2007) - Published 16 July, 2007

Analysis of structures causing instabilities

Thomas Wilhelm

Phys. Rev. E 76, 011911 (2007) - Published 17 July, 2007

Coupled composition-deformation phase-field method for multicomponent lipid membranes

Chloe M. Funkhouser, Francisco J. Solis, and K. Thornton

Phys. Rev. E 76, 011912 (2007) - Published 17 July, 2007

Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: Statistical temperature annealing

Jaegil Kim, John E. Straub, and Thomas Keyes

Phys. Rev. E 76, 011913 (2007) - Published 18 July, 2007

Dynamic and static light scattering analysis of DNA ejection from the phage $λ$

David Löf, Karin Schillén, Bengt Jönsson, and Alex Evilevitch

Phys. Rev. E 76, 011914 (2007) - Published 20 July, 2007

Theoretical study of kinetics of zipping phenomena in biomimetic polymers

Arthi Jayaraman, Erik E. Santiso, Carol K. Hall, and Jan Genzer

Phys. Rev. E 76, 011915 (2007) - Published 24 July, 2007

Gap junctions mediate large-scale Turing structures in a mean-field cortex driven by subcortical noise

Moira L. Steyn-Ross, D. A. Steyn-Ross, M. T. Wilson, and J. W. Sleigh

Phys. Rev. E 76, 011916 (2007) - Published 24 July, 2007

Representing perturbed dynamics in biological network models

Gautier Stoll, Jacques Rougemont, and Felix Naef

Phys. Rev. E 76, 011917 (2007) - Published 25 July, 2007

Stress fluctuations and motion of cytoskeletal-bound markers

Carina Raupach, Daniel Paranhos Zitterbart, Claudia T. Mierke, Claus Metzner, Frank A. Müller, and Ben Fabry

Phys. Rev. E 76, 011918 (2007) - Published 25 July, 2007

Evolution of microorganism locomotion induced by starvation

G. J. Sibona

Phys. Rev. E 76, 011919 (2007) - Published 25 July, 2007

Effects of dielectric discontinuities on two charged plates

Y. S. Jho, G. Park, C. S. Chang, P. A. Pincus, and M. W. Kim

Phys. Rev. E 76, 011920 (2007) - Published 26 July, 2007

Balancing torques in membrane-mediated interactions: Exact results and numerical illustrations

Martin Michael Müller, Markus Deserno, and Jemal Guven

Phys. Rev. E 76, 011921 (2007) - Published 26 July, 2007

Inverted catenoid as a fluid membrane with two points pulled together

Pavel Castro-Villarreal and Jemal Guven

Phys. Rev. E 76, 011922 (2007) - Published 27 July, 2007

Nonlinear drift-diffusion model of gating in the fast Cl channel

S. R. Vaccaro

Phys. Rev. E 76, 011923 (2007) - Published 30 July, 2007

Simple stochastic model for the evolution of protein lengths

C. Destri and C. Miccio

Phys. Rev. E 76, 011924 (2007) - Published 30 July, 2007

Liposome-induced DNA compaction and reentrant condensation investigated by dielectric relaxation spectroscopy and dynamic light scattering techniques

S. Zuzzi, C. Cametti, G. Onori, and S. Sennato

Phys. Rev. E 76, 011925 (2007) - Published 30 July, 2007

Model for Osteosarcoma-9 as a potent factor in cell survival and resistance to apoptosis

Ekaterini Vourvouhaki, Carla Carvalho, and Paulo Aguiar

Phys. Rev. E 76, 011926 (2007) - Published 31 July, 2007

BRIEF REPORTS

Statistical physics

Theoretical test of Jarzynski’s equality for reversible volume-switching processes of an ideal gas system

Jaeyoung Sung

Phys. Rev. E 76, 012101 (2007) - Published 18 July, 2007

Universality class of the two-dimensional site-diluted Ising model

P. H. L. Martins and J. A. Plascak

Phys. Rev. E 76, 012102 (2007) - Published 31 July, 2007

Biological physics

Improving an all-atom force field

Sandipan Mohanty and U. H. E. Hansmann

Phys. Rev. E 76, 012901 (2007) - Published 18 July, 2007

Magnetization of circular DNA

Seongjin Kim, Juyeon Yi, and M. Y. Choi

Phys. Rev. E 76, 012902 (2007) - Published 19 July, 2007

COMMENTS

Comment on “Correlations between isobaric and isochoric fragilities and thermodynamical scaling exponent for glass-forming liquids”

R. Casalini and C. M. Roland

Phys. Rev. E 76, 013501 (2007) - Published 18 July, 2007

Reply to “Comment on ‘Correlations between isobaric and isochoric fragilities and thermodynamical scaling exponent for glass-forming liquids’”

A. Grzybowski, K. Grzybowska, J. Zioło, and M. Paluch

Phys. Rev. E 76, 013502 (2007) - Published 18 July, 2007

Comment on “Characterization of the tunneling conductance across DNA bases”

Johan Lagerqvist, Michael Zwolak, and Massimiliano Di Ventra

Phys. Rev. E 76, 013901 (2007) - Published 9 July, 2007

Reply to “Comment on ‘Characterization of the tunneling conductance across DNA bases’ ”

Radomir Zikic, Predrag S. Krstić, X.-G. Zhang, Miguel Fuentes-Cabrera, Jack Wells, and Xiongce Zhao

Phys. Rev. E 76, 013902 (2007) - Published 9 July, 2007

RAPID COMMUNICATIONS

Interdisciplinary physics

RAPID COMMUNICATION

Emergence of self-sustained patterns in small-world excitable media

Sitabhra Sinha, Jari Saramäki, and Kimmo Kaski

Phys. Rev. E 76, 015101(R) (2007) - Published 9 July, 2007

RAPID COMMUNICATION

Partitioning and modularity of graphs with arbitrary degree distribution

Jörg Reichardt and Stefan Bornholdt

Phys. Rev. E 76, 015102(R) (2007) - Published 10 July, 2007

Chaos and pattern formation

RAPID COMMUNICATION

Quantum resonances and ratchets in free-falling frames

Itzhack Dana and Vladislav Roitberg

Phys. Rev. E 76, 015201(R) (2007) - Published 13 July, 2007

RAPID COMMUNICATION

Fractal conductance fluctuations of classical origin

H. Hennig, R. Fleischmann, L. Hufnagel, and T. Geisel

Phys. Rev. E 76, 015202(R) (2007) - Published 16 July, 2007

Fluid dynamics

RAPID COMMUNICATION

Controlling the stability transfer between oppositely traveling waves and standing waves by inversion-symmetry-breaking perturbations

A. Pinter, M. Lücke, and Ch. Hoffmann

Phys. Rev. E 76, 015301(R) (2007) - Published 6 July, 2007

ARTICLES

Interdisciplinary physics

Ensemble approach to the analysis of weighted networks

S. E. Ahnert, D. Garlaschelli, T. M. A. Fink, and G. Caldarelli

Phys. Rev. E 76, 016101 (2007) - Published 2 July, 2007

Numerical study of drying process and columnar fracture process in granule-water mixtures

Akihiro Nishimoto, Tsuyoshi Mizuguchi, and So Kitsunezaki

Phys. Rev. E 76, 016102 (2007) - Published 3 July, 2007

Lattice model for self-assembly with application to the formation of cytoskeletal-like structures

Shannon F. Stewman and Aaron R. Dinner

Phys. Rev. E 76, 016103 (2007) - Published 11 July, 2007

Synchronization in time-varying networks: A matrix measure approach

Maoyin Chen

Phys. Rev. E 76, 016104 (2007) - Published 11 July, 2007

Hysteresis phenomena of the intelligent driver model for traffic flow

Wang Dahui, Wei Ziqiang, and Fan Ying

Phys. Rev. E 76, 016105 (2007) - Published 12 July, 2007

Self-emergence of knowledge trees: Extraction of the Wikipedia hierarchies

Lev Muchnik, Royi Itzhack, Sorin Solomon, and Yoram Louzoun

Phys. Rev. E 76, 016106 (2007) - Published 13 July, 2007

Activity-dependent neural network model on scale-free networks

Gian Luca Pellegrini, Lucilla de Arcangelis, Hans J. Herrmann, and Carla Perrone-Capano

Phys. Rev. E 76, 016107 (2007) - Published 17 July, 2007

Statistical analysis of financial returns for a multiagent order book model of asset trading

Tobias Preis, Sebastian Golke, Wolfgang Paul, and Johannes J. Schneider

Phys. Rev. E 76, 016108 (2007) - Published 20 July, 2007

Relation between volatility correlations in financial markets and Omori processes occurring on all scales

Philipp Weber, Fengzhong Wang, Irena Vodenska-Chitkushev, Shlomo Havlin, and H. Eugene Stanley

Phys. Rev. E 76, 016109 (2007) - Published 24 July, 2007

Relationship between microscopic dynamics in traffic flow and complexity in networks

Xin-Gang Li, Zi-You Gao, Ke-Ping Li, and Xiao-Mei Zhao

Phys. Rev. E 76, 016110 (2007) - Published 25 July, 2007

Chaos and pattern formation

Propagation and refraction of chemical waves generated by local periodic forcing in a reaction-diffusion model

Renwu Zhang, Lingfa Yang, Anatol M. Zhabotinsky, and Irving R. Epstein

Phys. Rev. E 76, 016201 (2007) - Published 2 July, 2007

Fingering instabilities of a reactive micellar interface

Thomas Podgorski, Michael C. Sostarecz, Sylvain Zorman, and Andrew Belmonte

Phys. Rev. E 76, 016202 (2007) - Published 2 July, 2007

Doubly diversity-induced resonance

Martin Gassel, Erik Glatt, and Friedemann Kaiser

Phys. Rev. E 76, 016203 (2007) - Published 3 July, 2007

Transitions to amplitude death in a regular array of nonlinear oscillators

Junzhong Yang

Phys. Rev. E 76, 016204 (2007) - Published 9 July, 2007

Survival versus collapse: Abrupt drop of excitability kills the traveling pulse, while gradual change results in adaptation

Masanobu Tanaka, Hiroki Nagahara, Hiroyuki Kitahata, Valentin Krinsky, Konstantin Agladze, and Kenichi Yoshikawa

Phys. Rev. E 76, 016205 (2007) - Published 10 July, 2007

Semiclassical expansion of the smooth part of the density of states, with application to the hydrogen atom in a uniform magnetic field

Hervé Kunz, Thierry Schüpbach, and Marc-André Dupertuis

Phys. Rev. E 76, 016215 (2007) - Published 23 July, 2007

Prediction of fluid occupancy in fractures using network modeling and x-ray microtomography. I: Data conditioning and model description

Zuleima T. Karpyn and Mohammad Piri

Phys. Rev. E 76, 016315 (2007) - Published 31 July, 2007

Prediction of fluid occupancy in fractures using network modeling and x-ray microtomography. II: Results

Mohammad Piri and Zuleima T. Karpyn

Phys. Rev. E 76, 016316 (2007) - Published 31 July, 2007

Plasma physics

Giant electromagnetic vortex and MeV monoenergetic electrons generated by short laser pulses in underdense plasma near quarter critical density region

Alexei Zhidkov, Koshichi Nemoto, Takuya Nayuki, Yuji Oishi, and Takashi Fuji

Phys. Rev. E 76, 016401 (2007) - Published 5 July, 2007

BRIEF REPORTS

Interdisciplinary physics

Enhancing the transmission efficiency by edge deletion in scale-free networks

Guo-Qing Zhang, Di Wang, and Guo-Jie Li

Phys. Rev. E 76, 017101 (2007) - Published 13 July, 2007

Stabilized Kuramoto-Sivashinsky equation: A useful model for secondary instabilities and related dynamics of experimental one-dimensional cellular flows

P. Brunet

Phys. Rev. E 76, 017204 (2007) - Published 13 July, 2007

Soliton turbulence in the complex Ginzburg-Landau equation

Hidetsugu Sakaguchi

Phys. Rev. E 76, 017205 (2007) - Published 23 July, 2007

Fluid dynamics

Micronanostructures of the scales on a mosquito’s legs and their role in weight support

C. W. Wu, X. Q. Kong, and Diane Wu

Phys. Rev. E 76, 017301 (2007) - Published 5 July, 2007

Plasma physics

Diffusive radiation in one-dimensional Langmuir turbulence

G. D. Fleishman and I. N. Toptygin

Phys. Rev. E 76, 017401 (2007) - Published 10 July, 2007

Effect of positron space charge on operation of an antihydrogen trap

C. A. Ordonez

Phys. Rev. E 76, 017402 (2007) - Published 16 July, 2007

ERRATA

Erratum: Symmetry-based determination of space-time functions in nonequilibrium growth processes [Phys. Rev. E 74, 061604 (2006)]

Andreas Röthlein, Florian Baumann, and Michel Pleimling

Phys. Rev. E 76, 019901 (2007) - Published 2 July, 2007

Publisher's Note: Inferring Markov chains: Bayesian estimation, model comparison, entropy rate, and out-of-class modeling [Phys. Rev. E 76, 011106 (2007)]

Christopher C. Strelioff, James P. Crutchfield, and Alfred W. Hübler

Phys. Rev. E 76, 019902 (2007) - Published 23 July, 2007

Publisher's Note: Griffiths singularities and algebraic order in the exact solution of an Ising model on a fractal modular network [Phys. Rev. E 75, 061104 (2007)]

Michael Hinczewski

Phys. Rev. E 76, 019903 (2007) - Published 26 July, 2007

Publisher's Note: Vorticity structuring and velocity rolls triggered by gradient shear bands [Phys. Rev. E 76, 016311 (2007)]

Suzanne M. Fielding

Phys. Rev. E 76, 019904 (2007) - Published 31 July, 2007