HIGHLIGHTED ARTICLES

Self-assembled clusters of mutually repelling particles in confinement

P. D. S. de Lima, R. De La Cour, K. Gaff, J. M. de Araújo, S. J. Cox, M. S. Ferreira, and S. Hutzler

Phys. Rev. E 112, 044150 (2025) - Published 29 October, 2025

Mutually repelling particles form spontaneously ordered clusters when forced into confinement. With experiments and simulations, this work demonstrates that it is possible to induce particles of very different types to self-assemble into the same ordered geometric structure.

#WellStructured #SoftMatterSpotlight #TheoryExperiment

Hovering flight in flapping insects and hummingbirds: A natural real-time and stable extremum-seeking feedback system

Ahmed A. Elgohary and Sameh A. Eisa

Phys. Rev. E 112, 044412 (2025) - Published 22 October, 2025

A new study suggests that a simple feedback mechanism enables the steady hovering of flapping insects and hummingbirds.

Analytic theory of dropout regularization

Francesco Mori and Francesca Mignacco

Phys. Rev. E 112, 045301 (2025) - Published 1 October, 2025

Dropout is a widely used regularization technique in training neural networks for which dropout rates are typically selected heuristically. In order to develop a principled framework for understanding their impact on learning dynamics, the authors present an analytic theory of dropout in two-layer neural networks trained via online stochastic gradient descent.

Thermodynamic constraints and pseudotransition behavior in a one-dimensional waterlike system

F. F. Braz, S. M. de Souza, M. L. Lyra, and Onofre Rojas

Phys. Rev. E 112, 044144 (2025) - Published 24 October, 2025

A one-dimensional lattice model of a waterlike system, with van der Waals and hydrogen-bond interactions, shows sharp thermodynamic anomalies similar to a classical phase transition, despite the absence of a true transition. The authors also find that these anomalies behave differently in grand-canonical or fixed-density conditions.

#AdvancingField #TimelyTopic

Transition to chaos with conical billiards

Lara Braverman and David R. Nelson

Phys. Rev. E 112, 044221 (2025) - Published 21 October, 2025

A qualitative and quantitative analysis of the transition to chaos observed in a billiard system on the surface of cones is reported in this study. The results represent an advance in the multidisciplinary area going from mathematical physics to geometrical optics, and from the biophysics of microorganisms to the statistical physics of complexity and ergodicity.

#AdvancingField #WellStructured

Upper bound for the stability of Boolean networks

Venkata Sai Narayana Bavisetty, Matthew Wheeler, Reinhard Laubenbacher, and Claus Kadelka

Phys. Rev. E 112, 044310 (2025) - Published 24 October, 2025

The authors present a proof about upper bounds for the stability of basins of attraction in Boolean networks. They also demonstrate that coherence and basin entropy are negatively linearly related. The work is relevant for gene regulatory systems, which often use Boolean networks as models.

#TechnicalAdvancement #BiophysicsSpotlight

Folding lattice proteins confined on minimal grids using a quantum-inspired encoding

Anders Irbäck, Lucas Knuthson, and Sandipan Mohanty

Phys. Rev. E 112, 045302 (2025) - Published 1 October, 2025

This work reformulates protein folding as a quadratic unconstrained binary optimization problem and shows that even dense systems with steric clashes can be efficiently solved using either classical or hybrid quantum annealing. The authors validated their methods against exact solutions from exhaustive structure enumeration.

#BiophysicsSpotlight #Interdisciplinary #TimelyTopic

Dependence of the polymer adsorption transition on chain stiffness and surface interaction range: A partition-function-zero analysis

Mark P. Taylor and Jutta Luettmer-Strathmann

Phys. Rev. E 112, 045404 (2025) - Published 10 October, 2025

This paper addresses how polymer stiffness and the range of surface attraction determine the adsorption transition. Using partition function zeros from simulations of semiflexible polymer chains, it identifies three distinct scaling regimes and confirms predicted scaling laws across a broad parameter space.

#SoftMatterSpotlight #UniversalBehavior #ClassicalProblem

Gigantic dynamical spreading and anomalous diffusion of jerky active particles

Hartmut Löwen

Phys. Rev. E 112, 045412 (2025) - Published 17 October, 2025

This work introduces an equation of motion to describe self-propelled particles which are dominated by a change in acceleration, termed a “jerk.” Depending upon parameters, the mean-squared displacement associated with this equation can show extremely large spreading. The authors also propose an experimental setup that can implement their “jerk” equation of motion.

#AdvancingField #SoftMatterSpotlight

Cascade crack in chain of beads

Meysam Bagheri and Thorsten Pöschel

Phys. Rev. E 112, 045414 (2025) - Published 17 October, 2025

This paper considers a chain of spheres linked by liquid bridges and demonstrates how the rupture of a single bridge leads to rupture of the chain at multiple sites.

#SoftMatterSpotlight #BroadlyAccessible

Force chain dynamics in a quasistatic granular pile

Benjamin Allen and Nicholas W. Hayman

Phys. Rev. E 112, 045416 (2025) - Published 20 October, 2025

Even when granular piles appear stable, they are in a fragile, nonequilibrium state, undergoing sporadic particle rearrangements and force-chain changes. The authors experimentally investigate particle stresses in quasi-two-dimensional grain piles over month-long time periods, unveiling grain-scale changes in the system that may underlie transitions into granular failure and creep.

#WellStructured #ClearMotivation

Singular density correlations in chiral active fluids in three dimensions

Yuta Kuroda, Takeshi Kawasaki, and Kunimasa Miyazaki

Phys. Rev. E 112, 045426 (2025) - Published 27 October, 2025

Chiral active matter composed of particles that self-propel and self-rotate at a constant angular velocity has been extensively studied in two dimensions, but far less is known in three dimensions, where particles exhibit helical motion. This manuscript studies density fluctuations in a system of helical active swimmers. Numerical simulations, supported by a fluctuating hydrodynamic theory, show that helicity induces singular density correlations and hyperuniformity in the direction perpendicular to the torque, while giant density fluctuations emerge along the parallel direction.

#AdvancingField #SoftMatterSpotlight

Conformation and dynamics of active polymers with one end fixed

Song Wu, Jia-Xiang Li, and Yu-Qiang Ma

Phys. Rev. E 112, 045431 (2025) - Published 30 October, 2025

A simulation study of polar active polymers with a fixed end shows how the choice of the fixed point, either the tail or the head, leads to dramatically distinct conformational and dynamical behaviors. Active polymers with a fixed tail undergo nonuniform stretching, while those with a fixed head experience uniform compression.

#SoftMatterSpotlight #UniversalBehavior #WellStructured

Giant density fluctuations in locally hyperuniform states

Sara Dal Cengio, Romain Mari, and Eric Bertin

Phys. Rev. E 112, L042101 (2025) - Published 14 October, 2025

Ordered active matter is typically characterized by giant density fluctuations. Nonequilibrium absorbing phase transition can suppress fluctuations resulting in hyperuniform states. Here the authors present the interplay between these phenomena in a model of active nematics coupled to an absorbing phase transition, showing a crossover between enhancement and suppression of fluctuations emerging at different length scales.

#AdvancingField #WellStructured

Emerging crystallization in one dimension

Lila Bouzar and René Messina

Phys. Rev. E 112, L042105 (2025) - Published 21 October, 2025

For sufficiently high density, the pair distribution function g(r) of the one-dimensional hard-sphere fluid shows a crossover in its decay from algebraic to exponential as r increases. This crossover is interpreted as a signal of incipient solidlike order in one dimension, despite the absence of a true phase transition.

#UniversalBehavior #AdvancingField

Beyond holography: The entropic quantum gravity foundations of anisotropic diffusion

Ginestra Bianconi

Phys. Rev. E 112, L043301 (2025) - Published 16 October, 2025

This study establishes a conceptual and mathematical connection between the Perona-Malik anisotropic diffusion algorithm and the entropic quantum gravity framework based on geometric quantum relative entropy. The proposal lies at the interface of machine learning, information theory, and quantum gravity.

#TimelyTopic #Interdisciplinary #MachineLearningSpotlight

Buckling and zipping of a magnetic ring under gravity

Adrien Wafflard, Simon Van der Heyde, Jérémy Dhyon, Eric Opsomer, and Nicolas Vandewalle

Phys. Rev. E 112, L043403 (2025) - Published 24 October, 2025

Ring-shaped assemblies of magnetic beads behave similarly to a flexible, elastic annulus. In this paper, the authors perform a tabletop experiment with rings under gravity and report that initially circular rings experience flattening as the number of magnetic beads grows, until they reach a zipping state, where opposite sites stick together. The experiments are supported by a theoretical model and simulations that predict the observed scaling laws.

#TheoryExperiment #ClearMotivation #BroadlyAccessible

LETTERS

Statistical Physics

Giant density fluctuations in locally hyperuniform states

Sara Dal Cengio, Romain Mari, and Eric Bertin

Phys. Rev. E 112, L042101 (2025) - Published 14 October, 2025

Ordered active matter is typically characterized by giant density fluctuations. Nonequilibrium absorbing phase transition can suppress fluctuations resulting in hyperuniform states. Here the authors present the interplay between these phenomena in a model of active nematics coupled to an absorbing phase transition, showing a crossover between enhancement and suppression of fluctuations emerging at different length scales.

#AdvancingField #WellStructured

Upper bounded current fluctuations in one-dimensional driven transport systems

Jiayin Gu and Fan Zhang

Phys. Rev. E 112, L042102 (2025) - Published 14 October, 2025

Coupling an elastic string to an active bath: The emergence of inverse damping

Aaron Beyen, Christian Maes, and Ji-Hui Pei (裴继辉)

Phys. Rev. E 112, L042103 (2025) - Published 17 October, 2025

Family-Vicsek universality of the binary intrinsic dimension of nonequilibrium data

Roberto Verdel, Devendra Singh Bhakuni, and Santiago Acevedo

Phys. Rev. E 112, L042104 (2025) - Published 17 October, 2025

Emerging crystallization in one dimension

Lila Bouzar and René Messina

Phys. Rev. E 112, L042105 (2025) - Published 21 October, 2025

For sufficiently high density, the pair distribution function g(r) of the one-dimensional hard-sphere fluid shows a crossover in its decay from algebraic to exponential as r increases. This crossover is interpreted as a signal of incipient solidlike order in one dimension, despite the absence of a true phase transition.

#UniversalBehavior #AdvancingField

Nonlinear Dynamics and Chaos

Weak chaos, anomalous diffusion, and weak ergodicity breaking in systems with delay

Tony Albers, Lukas Hille, David Müller-Bender, and Günter Radons

Phys. Rev. E 112, L042201 (2025) - Published 14 October, 2025

Topologically protected synchronization in networks

Massimo Ostilli

Phys. Rev. E 112, L042202 (2025) - Published 17 October, 2025

Optimal energy pumping in an entrained neural system by frequency shuffling

Aarsh Chotalia, Richa Phogat, and P. Parmananda

Phys. Rev. E 112, L042203 (2025) - Published 20 October, 2025

Correspondence principle, dissipation, and Ginibre ensemble

David Villaseñor, Hua Yan, Matic Orel, and Marko Robnik

Phys. Rev. E 112, L042204 (2025) - Published 29 October, 2025

Networks and Complex Systems

Predicting the response of structurally altered and asymmetrical networks

Melvyn Tyloo

Phys. Rev. E 112, L042301 (2025) - Published 10 October, 2025

Biological Physics

Geometry of T1 transitions in epithelia

Pierre A. Haas

Phys. Rev. E 112, L042401 (2025) - Published 9 October, 2025

Plasma Physics

Turbulence-generated stepped safety factor profiles in tokamaks with low magnetic shear

Arnas Volčokas, Justin Ball, Giovanni Di Giannatale, and Stephan Brunner

Phys. Rev. E 112, L043201 (2025) - Published 17 October, 2025

Computational Physics, Machine Learning, and Artificial Intelligence

Beyond holography: The entropic quantum gravity foundations of anisotropic diffusion

Ginestra Bianconi

Phys. Rev. E 112, L043301 (2025) - Published 16 October, 2025

This study establishes a conceptual and mathematical connection between the Perona-Malik anisotropic diffusion algorithm and the entropic quantum gravity framework based on geometric quantum relative entropy. The proposal lies at the interface of machine learning, information theory, and quantum gravity.

#TimelyTopic #Interdisciplinary #MachineLearningSpotlight

Soft Matter including Polymers, Liquid Crystals, and Granular Materials

Avalanche criticality emerges by thermal fluctuation in a quiescent glass

Yuki Takaha, Hideyuki Mizuno, and Atsushi Ikeda

Phys. Rev. E 112, L043401 (2025) - Published 7 October, 2025

Superhelical locomotion of an active gel driven by scroll waves

Yunjie Wang, Ling Yuan, Tan Gao, Lin Ren, Zihao Liu, Chen Ji, Irving R. Epstein, and Qingyu Gao

Phys. Rev. E 112, L043402 (2025) - Published 10 October, 2025

Buckling and zipping of a magnetic ring under gravity

Adrien Wafflard, Simon Van der Heyde, Jérémy Dhyon, Eric Opsomer, and Nicolas Vandewalle

Phys. Rev. E 112, L043403 (2025) - Published 24 October, 2025

Ring-shaped assemblies of magnetic beads behave similarly to a flexible, elastic annulus. In this paper, the authors perform a tabletop experiment with rings under gravity and report that initially circular rings experience flattening as the number of magnetic beads grows, until they reach a zipping state, where opposite sites stick together. The experiments are supported by a theoretical model and simulations that predict the observed scaling laws.

#TheoryExperiment #ClearMotivation #BroadlyAccessible

Mechanics, Interfaces, and Films

Stochastic porous-medium equation in one dimension

Maximilien Bernard, Andrei A. Fedorenko, Pierre Le Doussal, and Alberto Rosso

Phys. Rev. E 112, L043501 (2025) - Published 6 October, 2025

ARTICLES

Statistical Physics

Thermodynamic irreversibility in underdamped Brownian motion with spatial temperature gradients

Mesfin Asfaw Taye

Phys. Rev. E 112, 044101 (2025) - Published 1 October, 2025

Dissecting the quantum phase transition in the transverse Ising model

Yun-Tong Yang, Fu-Zhou Chen, and Hong-Gang Luo

Phys. Rev. E 112, 044102 (2025) - Published 1 October, 2025

Colored sandpile

S. S. Manna

Phys. Rev. E 112, 044103 (2025) - Published 1 October, 2025

RETRACTED: Multiparticle quantum heat engine: Exploring the impact of criticality on efficiency

Anass Hminat, Abdallah Slaoui, Brahim Amghar, and Rachid Ahl Laamara

Phys. Rev. E 112, 044104 (2025) - Published 2 October, 2025

Universal property of random trajectories in bounded domains

T. Binzoni, E. Dumonteil, and A. Mazzolo

Phys. Rev. E 112, 044105 (2025) - Published 3 October, 2025

Generic method for integrating Lindblad master equations

Jiayin Gu and Fan Zhang

Phys. Rev. E 112, 044106 (2025) - Published 3 October, 2025

Impact of on-site potential on the thermal-siphon phenomenon in networks

Kezhao Xiong and Zhuohan Wang

Phys. Rev. E 112, 044107 (2025) - Published 3 October, 2025

Generalization of the Feynman-Kac formula for Markov processes

Victor E. Gluzberg and Yuri A. Katz

Phys. Rev. E 112, 044108 (2025) - Published 6 October, 2025

Scaling, fractal dynamics, and critical exponents: Application in a noninteger-dimensional Ising model

Henrique A. de Lima, Ismael S. S. Carrasco, Marcio Santos, and Fernando A. Oliveira

Phys. Rev. E 112, 044109 (2025) - Published 6 October, 2025

Abrupt transitions in the optimization of diffusion with distributed resetting

Pedro Julián-Salgado, Leonardo Dagdug, and Denis Boyer

Phys. Rev. E 112, 044110 (2025) - Published 6 October, 2025

Dynamic patterns and phase transitions in confined active particle systems

Roshan Singh, Ramakrishna Ramaswamy, and Sujin B. Babu

Phys. Rev. E 112, 044111 (2025) - Published 7 October, 2025

Transitions and thermodynamics on species graphs of chemical reaction networks

Keisuke Sugie, Dimitri Loutchko, and Tetsuya J. Kobayashi

Phys. Rev. E 112, 044112 (2025) - Published 8 October, 2025

Bond percolation in distorted square and triangular lattices

Bishnu Bhowmik, Sayantan Mitra, Robert M. Ziff, and Ankur Sensharma

Phys. Rev. E 112, 044113 (2025) - Published 9 October, 2025

Thermodynamic cost of random-time protocols

Izaak Neri

Phys. Rev. E 112, 044114 (2025) - Published 9 October, 2025

Stochastic radiative transfer in random media. IV. The impact of dimension in conditions with the radiation coupled to material

Cong-Zhang Gao, Jian Ren, Ying Cai, Jinghong Li, Xu Liu, Zheng-Feng Fan, and Jian-Wei Yin

Phys. Rev. E 112, 044115 (2025) - Published 9 October, 2025

Optimal reset of Zeeman disk qubits

Thomas G. Pedersen, Horia D. Cornean, and Petar Popovski

Phys. Rev. E 112, 044116 (2025) - Published 9 October, 2025

Map entropy and the structural origins of irreversibility

Samuel J. Frueh

Phys. Rev. E 112, 044117 (2025) - Published 9 October, 2025

Walking on Archimedean lattices: Insights from Bloch band theory

Davidson Noby Joseph and Igor Boettcher

Phys. Rev. E 112, 044118 (2025) - Published 10 October, 2025

Classical three-dimensional Heisenberg model with competing dynamics

R. A. Dumer, D. R. da Costa, and M. Godoy

Phys. Rev. E 112, 044119 (2025) - Published 14 October, 2025

Dissipation in fermionic two-body continuous-time quantum walk under the steepest entropy ascent formalism

Rohit Kishan Ray, R. Srikanth, and Sonjoy Majumder

Phys. Rev. E 112, 044120 (2025) - Published 14 October, 2025

Curzon-Ahlborn-type efficiency in a Brownian heat engine with exponential temperature profile

Mesfin Asfaw Taye

Phys. Rev. E 112, 044122 (2025) - Published 14 October, 2025

Statistical properties of stochastic functionals under general resetting

Vicenç Méndez and Rosa Flaquer-Galmés

Phys. Rev. E 112, 044123 (2025) - Published 14 October, 2025

Enhanced thermal transport effects in high-complexity networks

Kezhao Xiong, Zhaoju Mao, Yuqi Liu, and Wei Liu

Phys. Rev. E 112, 044124 (2025) - Published 14 October, 2025

Relativistic Lévy processes

Lucas G. B. de Souza, M. G. E. da Luz, E. P. Raposo, Evaldo M. F. Curado, and G. M. Viswanathan

Phys. Rev. E 112, 044125 (2025) - Published 14 October, 2025

Distribution of returns and its asymptotic behavior

Silvia A. Menchón and P. Román

Phys. Rev. E 112, 044126 (2025) - Published 15 October, 2025

Passive objects in a chiral active bath: From microscopic to macroscopic

Cory Hargus, Federico Ghimenti, Julien Tailleur, and Frédéric van Wijland

Phys. Rev. E 112, 044127 (2025) - Published 16 October, 2025

Phase probabilities in first-order transitions using machine learning

Diana Sukhoverkhova, Vyacheslav Mozolenko, and Lev Shchur

Phys. Rev. E 112, 044128 (2025) - Published 17 October, 2025

Geometric and nonequilibrium criticality in run-and-tumble particles with competing motility and attraction

Abir Bhowmick, Sayantan Mitra, and P. K. Mohanty

Phys. Rev. E 112, 044129 (2025) - Published 17 October, 2025

Generic power laws in higher-dimensional lattice models with multidirectional hopping

Animesh Hazra, Tanmoy Chakraborty, Anirban Mukherjee, and Punyabrata Pradhan

Phys. Rev. E 112, 044130 (2025) - Published 17 October, 2025

One- and two-boundary problems for jump processes that slowly converge to Gaussian behavior

V. P. Shkilev

Phys. Rev. E 112, 044131 (2025) - Published 17 October, 2025

Speed limits for discrete-time Markov chains

Sangyun Lee, Jae Sung Lee, and Jong-Min Park

Phys. Rev. E 112, 044132 (2025) - Published 20 October, 2025

Moment analysis of two-dimensional active Brownian run-and-tumble particles

Aoran Sun, Da Wei, Yiyu Zhang, Fangfu Ye, and Rudolf Podgornik

Phys. Rev. E 112, 044133 (2025) - Published 20 October, 2025

Universal trade-off between irreversibility and intrinsic timescale in thermal relaxation with applications to thermodynamic inference

Ruicheng Bao, Chaoqun Du, Zhiyu Cao, and Zhonghuai Hou

Phys. Rev. E 112, 044134 (2025) - Published 20 October, 2025

Critical behavior of a programmable time-crystal lattice gas

R. Hurtado-Gutiérrez, C. Pérez-Espigares, and P. I. Hurtado

Phys. Rev. E 112, 044135 (2025) - Published 20 October, 2025

Minimal dissipation with viscoelastic baths in weakly driven processes

Pierre Nazé and Fabrício Q. Potiguar

Phys. Rev. E 112, 044137 (2025) - Published 20 October, 2025

AB model with coalescence: Mean field and Monte Carlo simulations

Mauricio Girardi and Marcelo Freitas de Andrade

Phys. Rev. E 112, 044138 (2025) - Published 21 October, 2025

Temperature chaos as a logical consequence of the reentrant transition in spin glasses

Hidetoshi Nishimori, Masayuki Ohzeki, and Manaka Okuyama

Phys. Rev. E 112, 044140 (2025) - Published 22 October, 2025

Interrelation between precisions on integrated currents and on recurrence times in Markov jump processes

Alberto Garilli and Diego Frezzato

Phys. Rev. E 112, 044141 (2025) - Published 23 October, 2025

Quantifying when hyperuniformity of a many-particle system leads to uniformity across length scales

Carlo Vanoni, Paul J. Steinhardt, and Salvatore Torquato

Phys. Rev. E 112, 044142 (2025) - Published 23 October, 2025

Energy storage in a continuous-variable quantum battery with nonlinear coupling

C. A. Downing and M. S. Ukhtary

Phys. Rev. E 112, 044143 (2025) - Published 24 October, 2025

Thermodynamic constraints and pseudotransition behavior in a one-dimensional waterlike system

F. F. Braz, S. M. de Souza, M. L. Lyra, and Onofre Rojas

Phys. Rev. E 112, 044144 (2025) - Published 24 October, 2025

A one-dimensional lattice model of a waterlike system, with van der Waals and hydrogen-bond interactions, shows sharp thermodynamic anomalies similar to a classical phase transition, despite the absence of a true transition. The authors also find that these anomalies behave differently in grand-canonical or fixed-density conditions.

#AdvancingField #TimelyTopic

Microscopic heat engines with hydrodynamic flow

P. S. Pal, Sourabh Lahiri, and Arnab Saha

Phys. Rev. E 112, 044145 (2025) - Published 27 October, 2025

Causality, localization, and universality of monitored quantum walks with long-range hopping

Sayan Roy, Shamik Gupta, and Giovanna Morigi

Phys. Rev. E 112, 044146 (2025) - Published 27 October, 2025

Work statistics via real-time effective field theory: Application to work extraction from a thermal bath with qubit coupling

Jhh-Jing Hong and Feng-Li Lin

Phys. Rev. E 112, 044147 (2025) - Published 27 October, 2025

Benford's law from Turing ensembles and integer partitions

Alexander Kolpakov and Aidan Rocke

Phys. Rev. E 112, 044149 (2025) - Published 28 October, 2025

Self-assembled clusters of mutually repelling particles in confinement

P. D. S. de Lima, R. De La Cour, K. Gaff, J. M. de Araújo, S. J. Cox, M. S. Ferreira, and S. Hutzler

Phys. Rev. E 112, 044150 (2025) - Published 29 October, 2025

Mutually repelling particles form spontaneously ordered clusters when forced into confinement. With experiments and simulations, this work demonstrates that it is possible to induce particles of very different types to self-assemble into the same ordered geometric structure.

#WellStructured #SoftMatterSpotlight #TheoryExperiment

Deviations from spectral Dirac comb due to semiperiodic pulses

Audun Theodorsen, Gregor Decristoforo, and Odd Erik Garcia

Phys. Rev. E 112, 044151 (2025) - Published 29 October, 2025

Double-exponential scaling function for island-size distributions

Vladimir G. Dubrovskii

Phys. Rev. E 112, 044152 (2025) - Published 30 October, 2025

N bugs on a circle

Josh Briley and Bryan Quaife

Phys. Rev. E 112, 044153 (2025) - Published 30 October, 2025

Nonreciprocally coupled spin glasses: Exceptional-point-mediated phase transitions and aging

Giulia Garcia Lorenzana, Ada Altieri, Giulio Biroli, Michel Fruchart, and Vincenzo Vitelli

Phys. Rev. E 112, 044154 (2025) - Published 30 October, 2025

Quantum thermal diode with additional control by auxiliary atomic states

Qin Zhang, Zi-chen Zhang, Yi-jia Yang, Zheng Liu, and Chang-shui Yu

Phys. Rev. E 112, 044155 (2025) - Published 31 October, 2025

Nonlinear Dynamics and Chaos

Evolution of breathers with spectrally skewed forcing and damping

Alberto Alberello and Emilian Părău

Phys. Rev. E 112, 044201 (2025) - Published 1 October, 2025

Impact of on-site potentials on q breathers in nonlinear chains

Lin Deng, Chengguan Fang, Hang Yu, Yisen Wang, Zhigang Zhu, Weicheng Fu, Sergej Flach, and Liang Huang

Phys. Rev. E 112, 044202 (2025) - Published 2 October, 2025

Probing the localization effects in Krylov basis

J. Bharathi Kannan, Sreeram PG, Sanku Paul, S. Harshini Tekur, and M. S. Santhanam

Phys. Rev. E 112, 044203 (2025) - Published 6 October, 2025

Topologically protected edge oscillations in nonlinear dynamical units

Sayantan Nag Chowdhury and Hildegard Meyer-Ortmanns

Phys. Rev. E 112, 044204 (2025) - Published 6 October, 2025

Programmable structural control of a type of bistable spiral waves via engineered pulses

Jian Gao, Bin Xu, and Chuansheng Shen

Phys. Rev. E 112, 044205 (2025) - Published 6 October, 2025

Distant remote synchronization in multiple connected star graphs

Ruohua Gao and Zonghua Liu

Phys. Rev. E 112, 044206 (2025) - Published 7 October, 2025

Complex dynamics and multistability of driven diatomic molecules revealed by numerical modeling of shifted molecular potentials

O. T. Kolebaje, U. E. Vincent, and P. V. E. McClintock

Phys. Rev. E 112, 044207 (2025) - Published 7 October, 2025

Single-site measurements as probes of many-body quantum chaos

Isaías Vallejo-Fabila, Adway Kumar Das, Sayan Choudhury, and Lea F. Santos

Phys. Rev. E 112, 044208 (2025) - Published 7 October, 2025

Amplitude death in delay-coupled complex networks with higher-order interactions

Rui Xiao, Xueli Wang, Donghua Zhao, and Yongzheng Sun

Phys. Rev. E 112, 044209 (2025) - Published 9 October, 2025

Comparison of synchronizability in temporal networks with small-world and random topologies

Xiaoming Liang, Jindong Zhou, and Jie Zhou

Phys. Rev. E 112, 044210 (2025) - Published 9 October, 2025

Coupling-induced synchronized motion and stochastic resonance in overdamped dimers

Dhruv Agrawal and W. L. Reenbohn

Phys. Rev. E 112, 044211 (2025) - Published 14 October, 2025

Vortex phase transition in spin-orbit coupled Lee-Huang-Yang condensates

Hai-Bin Tang, Ning Yue, Jiang-Peng Yao, Shi-Dong Xu, Zhao Geng, Ai-Xia Zhang, and Ju-Kui Xue

Phys. Rev. E 112, 044212 (2025) - Published 14 October, 2025

Parametric instability in discrete models of spatiotemporally modulated materials

Jiuda Wu and Behrooz Yousefzadeh

Phys. Rev. E 112, 044213 (2025) - Published 14 October, 2025

Universality of discontinuous bifurcations in collisionless dynamics

Yoshiyuki Y. Yamaguchi and Julien Barré

Phys. Rev. E 112, 044214 (2025) - Published 14 October, 2025

Nonlinear modes coupling and chiral nonequilibrium dynamics in bosonic magnetic ladder under a harmonic trap

Jiang-Peng Yao, Zhao Geng, Jie Wang, Lai-Lai Mi, Hai-Bin Tang, Ai-Xia Zhang, Xin Qiao, and Ju-Kui Xue

Phys. Rev. E 112, 044215 (2025) - Published 14 October, 2025

Internal reliability and antireliability in dynamical networks

Tommaso Matteuzzi, Franco Bagnoli, Michele Baia, Stefano Iubini, and Arkady Pikovsky

Phys. Rev. E 112, 044216 (2025) - Published 14 October, 2025

Diffusion in the inverted triangular soft Lorentz gas

Esko Toivonen, Aleksi Majaniemi, Rainer Klages, and Esa Räsänen

Phys. Rev. E 112, 044217 (2025) - Published 14 October, 2025

Mixed-phase space of an active particle in experimental lemon billiards

Ruan V. A. Quirino, Francisco C. B. Leal, João V. A. Vasconcelos, Matheus S. Palmero, Antonio R. de C. Romaguera, Anderson L. R. Barbosa, and Tiago Araújo Lima

Phys. Rev. E 112, 044218 (2025) - Published 14 October, 2025

Disordering a permutation symmetric system: Revivals, thermalization, and chaos

Manju C, Uma Divakaran, and Arul Lakshminarayan

Phys. Rev. E 112, 044219 (2025) - Published 16 October, 2025

Quasi-Q-balls in massless scalar fields

Tomasz Romańczukiewicz and Yakov Shnir

Phys. Rev. E 112, 044220 (2025) - Published 16 October, 2025

Transition to chaos with conical billiards

Lara Braverman and David R. Nelson

Phys. Rev. E 112, 044221 (2025) - Published 21 October, 2025

A qualitative and quantitative analysis of the transition to chaos observed in a billiard system on the surface of cones is reported in this study. The results represent an advance in the multidisciplinary area going from mathematical physics to geometrical optics, and from the biophysics of microorganisms to the statistical physics of complexity and ergodicity.

#AdvancingField #WellStructured

Equations of motion of a track cyclist: Active particle dynamics under strong geometric constraints

C. Clanet, P. Odier, B. Pottier, and E. Brunet

Phys. Rev. E 112, 044222 (2025) - Published 22 October, 2025

Effect of stochasticity on initial transients and chaotic itinerancy for a natural circulation loop

John Matulis and Hitesh Bindra

Phys. Rev. E 112, 044223 (2025) - Published 23 October, 2025

Generalized separatrix mapping in a system with more than two degrees of freedom

Pablo M. Cincotta, Claudia M. Giordano, and Carles Simó

Phys. Rev. E 112, 044224 (2025) - Published 23 October, 2025

Cascade tipping, cascade hopping and indirect tipping in ecological systems

Ayanava Basak, Syamal Kumar Dana, and Nandadulal Bairagi

Phys. Rev. E 112, 044225 (2025) - Published 24 October, 2025

Classical out-of-time-order correlators for Bose-Hubbard systems and their relation to the finite-time Lyapunov exponent

Frank Grossmann and Marcus W. Beims

Phys. Rev. E 112, 044226 (2025) - Published 29 October, 2025

Freezing chaos without synaptic plasticity

Weizhong Huang and Haiping Huang

Phys. Rev. E 112, 044227 (2025) - Published 30 October, 2025

Networks and Complex Systems

Effects of inertia on the asynchronous state of a disordered Kuramoto model

Yagmur Kati, Ralf Toenjes, and Benjamin Lindner

Phys. Rev. E 112, 044301 (2025) - Published 6 October, 2025

Nonreciprocal random networks and their percolation properties

Chanania Steinbock

Phys. Rev. E 112, 044302 (2025) - Published 6 October, 2025

Role of zealots in the spread of linguistic traits

V. Dornelas, C. Anteneodo, R. Nunes, E. Heinsalu, and M. Patriarca

Phys. Rev. E 112, 044303 (2025) - Published 7 October, 2025

Fractional stochastic model of citation dynamics with memory and volatility

Keisuke Okamura

Phys. Rev. E 112, 044304 (2025) - Published 9 October, 2025

Phase transitions for polyadic epidemic and voter models with multiscale groups

Pia Steinmeyer, Jan Mölter, and Christian Kuehn

Phys. Rev. E 112, 044305 (2025) - Published 10 October, 2025

Sensitivity-driven migration and the evolution of cooperation in multiplayer games on structured populations

Dhaker Kroumi

Phys. Rev. E 112, 044306 (2025) - Published 17 October, 2025

Synchronization in bus systems with partially overlapping routes

Sakurako Tanida and Thorsten Pöschel

Phys. Rev. E 112, 044307 (2025) - Published 17 October, 2025

Explosive opinion polarization and depolarization with asymmetric perception

Haoyang Qian and Malbor Asllani

Phys. Rev. E 112, 044308 (2025) - Published 17 October, 2025

Filtering amplitude dependence of correlation dynamics in complex systems: Application to the cryptocurrency market

Marcin Wątorek, Marija Bezbradica, Martin Crane, Jarosław Kwapień, and Stanisław Drożdż

Phys. Rev. E 112, 044309 (2025) - Published 22 October, 2025

Upper bound for the stability of Boolean networks

Venkata Sai Narayana Bavisetty, Matthew Wheeler, Reinhard Laubenbacher, and Claus Kadelka

Phys. Rev. E 112, 044310 (2025) - Published 24 October, 2025

The authors present a proof about upper bounds for the stability of basins of attraction in Boolean networks. They also demonstrate that coherence and basin entropy are negatively linearly related. The work is relevant for gene regulatory systems, which often use Boolean networks as models.

#TechnicalAdvancement #BiophysicsSpotlight

Community detection of undirected hypergraphs by Ricci flow

Yulu Tian, Jicheng Ma, Yunyan Yang, and Liang Zhao

Phys. Rev. E 112, 044311 (2025) - Published 24 October, 2025

Model of talkers and listeners in social networks

Jakob M. Krebs and Kim Sneppen

Phys. Rev. E 112, 044312 (2025) - Published 27 October, 2025

Decomposing multivariate information rates in networks of random processes

Laura Sparacino, Gorana Mijatovic, Yuri Antonacci, Leonardo Ricci, Daniele Marinazzo, Sebastiano Stramaglia, and Luca Faes

Phys. Rev. E 112, 044313 (2025) - Published 29 October, 2025

Biological Physics

Landscapes and nonequilibrium fluctuations of eukaryotic gene regulation

Masaki Sasai, Bhaswati Bhattacharyya, Shin Fujishiro, and Yoshiaki Horiike

Phys. Rev. E 112, 044401 (2025) - Published 2 October, 2025

Voltage-sensing mechanism underlying the gating process of two-pore-domain potassium channels

Yuval Ben-Abu and Lev Mourokh

Phys. Rev. E 112, 044402 (2025) - Published 2 October, 2025

Exact statistics of helical wormlike chains with twist-bend coupling

Ashesh Ghosh, Kranthi K. Mandadapu, and David T. Limmer

Phys. Rev. E 112, 044403 (2025) - Published 14 October, 2025

Stochastic modeling of the mRNA kinetic process: A delay chemical master-equation model based on a survival probability

Hongwei Yin, Xiaoqing Wen, and Haohua Wang

Phys. Rev. E 112, 044405 (2025) - Published 15 October, 2025

Linear scaling of entropy versus energy in human brain activity, the Hagedorn temperature, and the Zipf law

Dante R. Chialvo and Romuald A. Janik

Phys. Rev. E 112, 044406 (2025) - Published 15 October, 2025

Computational topology of Drosophila melanogaster embryos: Emergent anatomy from the spatiotemporal distributions of hemocytes

Xinrui Hu, Nickolay Korabel, Tom H. Millard, and Thomas Andrew Waigh

Phys. Rev. E 112, 044407 (2025) - Published 16 October, 2025

Modeling postdisturbance empirical patterns in a forest ecosystem

Davide Zanchetta, Amos Maritan, and Sandro Azaele

Phys. Rev. E 112, 044408 (2025) - Published 16 October, 2025

Dynamic propagation and control of a West Nile virus model based on higher-order temporal network structure

Linhe Zhu and Yue Li

Phys. Rev. E 112, 044409 (2025) - Published 17 October, 2025

Dual influence of transcriptional and translational kinetics on gene expression noise

Mahima, Anandamohan Ghosh, and Ajeet K. Sharma

Phys. Rev. E 112, 044410 (2025) - Published 20 October, 2025

Deterministic control of magnetotactic bacteria via an analysis of their nanomagnetic structure

Noah Kent, Colin Gates, Bohdan Senyuk, Jan Bart ten Hove, Jeffrey Cameron, and Ivan I. Smalyukh

Phys. Rev. E 112, 044411 (2025) - Published 17 October, 2025

Hovering flight in flapping insects and hummingbirds: A natural real-time and stable extremum-seeking feedback system

Ahmed A. Elgohary and Sameh A. Eisa

Phys. Rev. E 112, 044412 (2025) - Published 22 October, 2025

A new study suggests that a simple feedback mechanism enables the steady hovering of flapping insects and hummingbirds.

Linking chromatin interaction network topology to three-dimensional genome conformation: An analytical framework for chromatin structure

Zhenquan Zhang, Zihao Wang, and Jiajun Zhang

Phys. Rev. E 112, 044413 (2025) - Published 22 October, 2025

Segregation, finite-time elastic singularities, and coarsening in renewable active matter

Ayan Roychowdhury, Saptarshi Dasgupta, and Madan Rao

Phys. Rev. E 112, 044414 (2025) - Published 24 October, 2025

Inferring the burst dynamics of coupled self-feedback gene expression circuits based on single-cell data

Jiaqi Wang, Yihao Yin, Wenjie Cao, Huahai Qiu, and Bengong Zhang

Phys. Rev. E 112, 044415 (2025) - Published 27 October, 2025

Collective learning in living neural networks facilitated by random contextual photostimulation

Dulara De Zoysa, Sylvester J. Gates III, Anna M. Emenheiser, Kate M. O’Neill, and Wolfgang Losert

Phys. Rev. E 112, 044416 (2025) - Published 29 October, 2025

Multiple Notch ligands in the synchronization of the segmentation clock

Marcos Wappner, Koichiro Uriu, Andrew C. Oates, and Luis G. Morelli

Phys. Rev. E 112, 044417 (2025) - Published 31 October, 2025

Fluid Dynamics

Hydrodynamic equations for a system with translational and rotational dynamics

Akira Yoshimori and Shankar P. Das

Phys. Rev. E 112, 045101 (2025) - Published 1 October, 2025

Two-dimensional valveless nanopump: Enabling rapid water transport

Min Wei, Zengyang Wu, Xiaoyan Zhou, and Hangjun Lu

Phys. Rev. E 112, 045102 (2025) - Published 6 October, 2025

Simulation of binary droplet collisions from bouncing to shattering regime

Mohammad Fahim Faisal Patwary, Doruk Isik, and Song-Charng Kong

Phys. Rev. E 112, 045103 (2025) - Published 14 October, 2025

Measuring the local mechanical properties of a floating elastic sheet

G. Le Doudic, M. Jafari, J. Barckicke, S. Perrard, and A. Eddi

Phys. Rev. E 112, 045104 (2025) - Published 15 October, 2025

Complex pressure-node formation and resonances induced by scatterers in a standing-wave acoustic cavity

Rizwan Ullah, Andres Barrio-Zhang, and Arezoo M. Ardekani

Phys. Rev. E 112, 045105 (2025) - Published 16 October, 2025

Characterization of porous nanoparticles using the lattice Boltzmann method for fluid flow

W. G. Rodrigues, Jr. and V. B. Henriques

Phys. Rev. E 112, 045106 (2025) - Published 17 October, 2025

Imbibition in fractally permeable media

Alexander S. Balankin

Phys. Rev. E 112, 045107 (2025) - Published 20 October, 2025

Mass diffusion and bending in dynamic wetting by phase-field and sharp-interface models

Tomas Fullana, Stéphane Zaleski, and Gustav Amberg

Phys. Rev. E 112, 045108 (2025) - Published 21 October, 2025

Influence of centrifugal force on convective flow in a spherical gap under a central force field

Vadim Travnikov and Christoph Egbers

Phys. Rev. E 112, 045109 (2025) - Published 22 October, 2025

Transient flow of a binary gas mixture through a long capillary at arbitrary rarefaction parameters

Mingming Gu, Zilong Deng, and Yongping Chen

Phys. Rev. E 112, 045110 (2025) - Published 31 October, 2025

Plasma Physics

Charged particle transport across magnetic field driven by magnetosonic solitons in plasma

N. V. Gerasimenko, F. M. Trukhachev, M. M. Vasiliev, and O. F. Petrov

Phys. Rev. E 112, 045201 (2025) - Published 3 October, 2025

Generation of isolated ultraintense half-cycle attosecond pulse in coherent bremsstrahlung regime by double-foil target mechanism

Lipan Qin, Ze Chen, Meiqi Sun, Jin Yan, Yan Tian, Zhongyi Chen, Yan Wang, Xunjie Ma, Xueqing Yan, and Yunliang Wang

Phys. Rev. E 112, 045202 (2025) - Published 7 October, 2025

Eastward transients in the dayside ionosphere. II. A parallel-plate capacitorlike effect

Magnus F. Ivarsen, Jean-Pierre St-Maurice, Glenn C. Hussey, Kathryn McWilliams, Yaqi Jin, Devin R. Huyghebaert, Yukinaga Miyashita, and David Sibeck

Phys. Rev. E 112, 045203 (2025) - Published 8 October, 2025

Eastward transients in the dayside ionosphere. I. Electrodynamics on closed field lines

Magnus F. Ivarsen, Jean-Pierre St-Maurice, Glenn C. Hussey, Daniel Billet, Devin R. Huyghebaert, Yaqi Jin, Yukinaga Miyashita, Satoshi Kasahara, Kaili Song, P. T. Jayachandran, Shoichiro Yokota, Yoshizumi Miyoshi, Kazuhiro Yamamoto, Atsuki Shinbori, Yoshiya Kasahara, Iku Shinohara, and Ayako Matsuoka

Phys. Rev. E 112, 045204 (2025) - Published 8 October, 2025

Resonant excitation of plasma wakefields with a train of relativistic particle bunches

L. Verra, M. Galletti, M. P. Anania, A. Biagioni, M. Carillo, E. Chiadroni, A. Cianchi, G. Costa, L. Crincoli, A. Del Dotto, M. Del Giorno, R. Demitra, G. Di Pirro, A. Giribono, V. Lollo, M. Opromolla, G. Parise, D. Pellegrini, R. Pompili, S. Romeo, G. Silvi, F. Stocchi, F. Villa, and M. Ferrario

Phys. Rev. E 112, 045205 (2025) - Published 8 October, 2025

Formation of multiscale structures in a self-gravitating dusty plasma with matter current

Chinmoy Bhattacharjee

Phys. Rev. E 112, 045206 (2025) - Published 9 October, 2025

Particle-in-cell simulations of burning inertial confinement fusion capsule implosions

Johannes J. van de Wetering, Justin R. Angus, W. Farmer, V. Geyko, D. Ghosh, D. Grote, C. Weber, and G. Zimmerman

Phys. Rev. E 112, 045207 (2025) - Published 9 October, 2025

Experimental observation of enhanced electron cyclotron resonance heating and nonlocal electron kinetics induced by Ramsauer-Townsend effect in ultralow electron temperature plasmas

Min-Seok Kim, Jeong-Hyun Lee, Jung-Eun Choi, and Chin-Wook Chung

Phys. Rev. E 112, 045208 (2025) - Published 14 October, 2025

Excitation and ionization by electron impact in transition and supertransition arrays

Djamel Benredjem and Jean-Christophe Pain

Phys. Rev. E 112, 045209 (2025) - Published 15 October, 2025

Theoretical analysis and dust charge diagnostics in binary complex plasmas

Wei-Ping Zhang, Fang-Ping Wang, Lan-Xin Shi, and Wen-Shan Duan

Phys. Rev. E 112, 045210 (2025) - Published 15 October, 2025

Electron magnetization effects on carbonaceous dusty nanoparticles grown in ArC2H2 capacitively coupled nonthermal plasma

Bhavesh Ramkorun, Saikat C. Thakur, Ryan B. Comes, and Edward Thomas, Jr.

Phys. Rev. E 112, 045211 (2025) - Published 21 October, 2025

Nonlinear tearing mode instability studied using Galerkin spectral method

Shuai Tang, Jiaqi Wang, Jian Liu, Min Jiang, Zhiyi Yin, Shaojie Wang, Dongjian Liu, and Zhiwei Ma

Phys. Rev. E 112, 045212 (2025) - Published 22 October, 2025

Laser amplification in eμ-ion plasmas

Y. Chen, R. Ou, H. Wang, S. J. Chen, Y. X. Zhong, Y. G. Chen, S. Tan, Y. X. Li, C. Y. Zheng, Z. J. Liu, L. H. Cao, M. M. Zhang, D. P. Feng, W. J. Zuo, and C. Z. Xiao

Phys. Rev. E 112, 045213 (2025) - Published 22 October, 2025

Effect on compression of lowering the design adiabat in the SQ-n campaign

K. L. Baker et al.

Phys. Rev. E 112, 045214 (2025) - Published 23 October, 2025

Effective field theory of plasmas in a Podolsky-corrected photonic field

Prabhat Singh and Punit Kumar

Phys. Rev. E 112, 045215 (2025) - Published 24 October, 2025

Wave topology in Hall magnetohydrodynamics

Alejandro Mesa Dame, Hong Qin, Eric Palmerduca, and Yichen Fu

Phys. Rev. E 112, 045216 (2025) - Published 27 October, 2025

Edge-localized-mode heat load effects on plasma-facing materials studied using runaway electrons in the Damavand tokamak

Ali Masoudi, Davoud Iraji, and Chapar Rasouli

Phys. Rev. E 112, 045217 (2025) - Published 28 October, 2025

Measurement of turbulent velocity and bounds for thermal diffusivity in laser shock compressed foams by x-ray photon correlation spectroscopy

Charles Heaton, Hao Yin, Dimitri Khaghani, Hae Ja Lee, Hannah Poole, Eric Blackman, Nina Boiadjieva, Xiaoqian M. Chen, Celine Crépisson, Gilbert W. Collins, Adrien Descamps, Arianna E. Gleason, Christian Gutt, Alexander N. Petsch, Lisa Randolph, Silke Nelson, Peregrine McGehee, Rajan Plumley, Christopher Spindloe, Thomas Stevens, Charlotte Stuart, Joshua J. Turner, Hussein Aluie, Jessica K. Shang, and Gianluca Gregori

Phys. Rev. E 112, 045218 (2025) - Published 29 October, 2025

Observation of the transverse modulation effect of two-stream instability on low-energy proton beam in low-density plasma

Guo-Dong Wang, Ke-Wei Tao, Rui Cheng, Wang-Wen Xu, Jun-Yu Dong, Lin-Hua Zhen, Zhao Wang, Ze-Xian Zhou, Lu-Lin Shi, Yu-Peng Chen, Jin-Fu Zhang, Yan-Hong Chen, Xue-Jian Jin, Xiao-Xia Wu, Yu Lei, Yu-Yu Wang, Zhang-Hu Hu, Yan-Shi Zhang, and Jie Yang

Phys. Rev. E 112, 045219 (2025) - Published 31 October, 2025

Computational Physics, Machine Learning, and Artificial Intelligence

Analytic theory of dropout regularization

Francesco Mori and Francesca Mignacco

Phys. Rev. E 112, 045301 (2025) - Published 1 October, 2025

Dropout is a widely used regularization technique in training neural networks for which dropout rates are typically selected heuristically. In order to develop a principled framework for understanding their impact on learning dynamics, the authors present an analytic theory of dropout in two-layer neural networks trained via online stochastic gradient descent.

Folding lattice proteins confined on minimal grids using a quantum-inspired encoding

Anders Irbäck, Lucas Knuthson, and Sandipan Mohanty

Phys. Rev. E 112, 045302 (2025) - Published 1 October, 2025

This work reformulates protein folding as a quadratic unconstrained binary optimization problem and shows that even dense systems with steric clashes can be efficiently solved using either classical or hybrid quantum annealing. The authors validated their methods against exact solutions from exhaustive structure enumeration.

#BiophysicsSpotlight #Interdisciplinary #TimelyTopic

Sampling the space of solutions of an artificial neural network

Alessandro Zambon, Enrico M. Malatesta, Guido Tiana, and Riccardo Zecchina

Phys. Rev. E 112, 045303 (2025) - Published 2 October, 2025

Orthogonal projections of hypercubes

Yoshiaki Horiike and Shin Fujishiro

Phys. Rev. E 112, 045304 (2025) - Published 6 October, 2025

Spatially compressed spectral proper orthogonal decomposition

Guanzhong Ma, Shiyan Lin, Ruiyu Li, Limin Gao, and Kai Tang

Phys. Rev. E 112, 045305 (2025) - Published 7 October, 2025

Ratio divergence learning using target energy in restricted Boltzmann machines: Beyond Kullback-Leibler divergence learning

Yuichi Ishida, Yuma Ichikawa, Aki Dote, Toshiyuki Miyazawa, and Koji Hukushima

Phys. Rev. E 112, 045306 (2025) - Published 7 October, 2025

Performance of machine-learning-assisted Monte Carlo in sampling from simple statistical physics models

Luca Maria Del Bono, Federico Ricci-Tersenghi, and Francesco Zamponi

Phys. Rev. E 112, 045307 (2025) - Published 7 October, 2025

Lattice Boltzmann method for the multiterm time-fractional mixed diffusion and diffusion-wave equations

Jia Tong, Fangfang Wu, Xiaoxiao Dong, and Shaobo Qu

Phys. Rev. E 112, 045308 (2025) - Published 7 October, 2025

Lattice Boltzmann method for radiative transfer in curvilinear coordinate systems

Mingqi Liu, Xiaochuan Liu, Yijie Wei, Keyong Zhu, and Yong Huang

Phys. Rev. E 112, 045309 (2025) - Published 8 October, 2025

Evolution of various initial many-particle configurations to disordered stealthy hyperuniform ground states

Samuel J. Dawley and Salvatore Torquato

Phys. Rev. E 112, 045310 (2025) - Published 8 October, 2025

Latent diffusion modeling of porous media informed by spatial statistics

Pejman Tahmasebi

Phys. Rev. E 112, 045311 (2025) - Published 9 October, 2025

Structure evolution and transport properties of CaSiO3 melt under mantle conditions from deep potential simulations

Lei Liu, Xiao-Long Pan, Fei-Yang Xu, Hua-Zhong Guo, and Zhi-Guo Li

Phys. Rev. E 112, 045312 (2025) - Published 14 October, 2025

Integer lattice gas with a sampling collision operator for the fluctuating Navier-Stokes equation

Noah Seekins and Alexander J. Wagner

Phys. Rev. E 112, 045313 (2025) - Published 14 October, 2025

Learned free-energy functionals from pair-correlation matching for dynamical density functional theory

Karnik Ram, Jacobus Dijkman, René van Roij, Jan-Willem van de Meent, Bernd Ensing, Max Welling, and Daniel Cremers

Phys. Rev. E 112, 045314 (2025) - Published 17 October, 2025

Phase-field lattice Boltzmann model with adjustable bulk viscosity for quasi-incompressible two-phase flows

Jin Bao, Long Ju, and Zhaoli Guo

Phys. Rev. E 112, 045315 (2025) - Published 21 October, 2025

Multiscale discrete Maxwell boundary condition for the discrete unified gas-kinetic scheme for all Knudsen number flows

Ziyang Xin, Yue Zhang, Chuang Zhang, and Zhaoli Guo

Phys. Rev. E 112, 045316 (2025) - Published 22 October, 2025

Soft Matter including Polymers, Liquid Crystals, and Granular Materials

Role of translational noise in motility-induced phase separation of hard active particles

Felipe Hawthorne, Pablo de Castro, and José A. Freire

Phys. Rev. E 112, 045401 (2025) - Published 1 October, 2025

Solution of the critical dynamics of the mean-field Kob-Andersen model

Gianmarco Perrupato and Tommaso Rizzo

Phys. Rev. E 112, 045402 (2025) - Published 3 October, 2025

Spontaneous cholesteric phase in ferroelectric nematic liquid crystals: Preference for integer number of pitches

Lincoln Paik and Jonathan V. Selinger

Phys. Rev. E 112, 045403 (2025) - Published 7 October, 2025

Dependence of the polymer adsorption transition on chain stiffness and surface interaction range: A partition-function-zero analysis

Mark P. Taylor and Jutta Luettmer-Strathmann

Phys. Rev. E 112, 045404 (2025) - Published 10 October, 2025

This paper addresses how polymer stiffness and the range of surface attraction determine the adsorption transition. Using partition function zeros from simulations of semiflexible polymer chains, it identifies three distinct scaling regimes and confirms predicted scaling laws across a broad parameter space.

#SoftMatterSpotlight #UniversalBehavior #ClassicalProblem

Bifurcation-based mechanical sensing of microchannels using microrobots

Andrew Bickerdike, Joseph Páez Chávez, Yang Liu, and Antoine Ferreira

Phys. Rev. E 112, 045405 (2025) - Published 10 October, 2025

Boundary accumulation of active rods in microchannels with elliptical cross-section

Chase Brown, Mykhailo Potomkin, and Shawn D. Ryan

Phys. Rev. E 112, 045407 (2025) - Published 15 October, 2025

Flow-induced disclination lines in nematic liquid crystals

Christian Bahr

Phys. Rev. E 112, 045408 (2025) - Published 15 October, 2025

Contact temporal network during motility-induced phase separation

Italo Salas, Francisca Guzmán-Lastra, Denisse Pastén, and Ariel Norambuena

Phys. Rev. E 112, 045409 (2025) - Published 15 October, 2025

Multiscale model for the pretension-dependent bending properties of DNA nanotube

Han-Lin Liu, Neng-Hui Zhang, Cheng-Yin Zhang, and Wei Lu

Phys. Rev. E 112, 045410 (2025) - Published 16 October, 2025

Cellular dynamics emerging from turbulent flows steered by active filaments

Mehrana R. Nejad, Julia M. Yeomans, and Sumesh P. Thampi

Phys. Rev. E 112, 045411 (2025) - Published 17 October, 2025

Gigantic dynamical spreading and anomalous diffusion of jerky active particles

Hartmut Löwen

Phys. Rev. E 112, 045412 (2025) - Published 17 October, 2025

This work introduces an equation of motion to describe self-propelled particles which are dominated by a change in acceleration, termed a “jerk.” Depending upon parameters, the mean-squared displacement associated with this equation can show extremely large spreading. The authors also propose an experimental setup that can implement their “jerk” equation of motion.

#AdvancingField #SoftMatterSpotlight

Shape-anisotropy-induced transitions of densest-packed structures in confined mixtures of circles and ellipses

Jiajun Chen (陈佳俊) and Ho-Kei Chan (陈浩基)

Phys. Rev. E 112, 045413 (2025) - Published 17 October, 2025

Cascade crack in chain of beads

Meysam Bagheri and Thorsten Pöschel

Phys. Rev. E 112, 045414 (2025) - Published 17 October, 2025

This paper considers a chain of spheres linked by liquid bridges and demonstrates how the rupture of a single bridge leads to rupture of the chain at multiple sites.

#SoftMatterSpotlight #BroadlyAccessible

Unveiling the regulation of triplet excitons by intermolecular interactions in 4-phenylmorpholine: Insights from transient absorption spectroscopy and theoretical modeling

Guan Tiantian, Yang Yonggang, Liu Yang, Jiang Zhinan, Qin Chaochao, and Liu Yufang

Phys. Rev. E 112, 045415 (2025) - Published 20 October, 2025

Force chain dynamics in a quasistatic granular pile

Benjamin Allen and Nicholas W. Hayman

Phys. Rev. E 112, 045416 (2025) - Published 20 October, 2025

Even when granular piles appear stable, they are in a fragile, nonequilibrium state, undergoing sporadic particle rearrangements and force-chain changes. The authors experimentally investigate particle stresses in quasi-two-dimensional grain piles over month-long time periods, unveiling grain-scale changes in the system that may underlie transitions into granular failure and creep.

#WellStructured #ClearMotivation

Ultrastable jammed sphere packings with a wide range of particle dispersities

Robert S. Hoy

Phys. Rev. E 112, 045417 (2025) - Published 20 October, 2025

Equillibrium distance between polycatenar ligand-coated metal nanoparticles

A. Duhau, S. Tamilselvi, A. Gavriluta, J. L. Gallani, B. Donnio, and M. V. Rastei

Phys. Rev. E 112, 045418 (2025) - Published 21 October, 2025

Boundary effects in classical liquid density fluctuations at finite temperature

Herondy Mota and K. E. L. de Farias

Phys. Rev. E 112, 045419 (2025) - Published 22 October, 2025

Scaling description of the relaxation dynamics and dynamical heterogeneity of an active glass-forming liquid

Subhodeep Dey and Smarajit Karmakar

Phys. Rev. E 112, 045420 (2025) - Published 22 October, 2025

Contact matrix method to capture the features of knot conformations

Neda Abbasi Taklimi, Franco Ferrari, Marcin Radosław Piątek, and Luca Tubiana

Phys. Rev. E 112, 045421 (2025) - Published 23 October, 2025

Unified picture of structural relaxation, beta relaxation, and excess wing in glass formers

Chun-Shing Lee, Hai-Yao Deng, Linghan Zhang, Chu Xiao, Bo Li, Cho-Tung Yip, and Chi-Hang Lam

Phys. Rev. E 112, 045422 (2025) - Published 23 October, 2025

Relaxation of Hamiltonian dynamics in intermediate timescales and slow dynamics of glass-forming liquids

Yoshihiro Nakahara and Akira Shudo

Phys. Rev. E 112, 045424 (2025) - Published 24 October, 2025

Granular drag and lift force on a flexible fiber

Antonio Pol, Sara Storti, and Fabio Gabrieli

Phys. Rev. E 112, 045425 (2025) - Published 24 October, 2025

Singular density correlations in chiral active fluids in three dimensions

Yuta Kuroda, Takeshi Kawasaki, and Kunimasa Miyazaki

Phys. Rev. E 112, 045426 (2025) - Published 27 October, 2025

Chiral active matter composed of particles that self-propel and self-rotate at a constant angular velocity has been extensively studied in two dimensions, but far less is known in three dimensions, where particles exhibit helical motion. This manuscript studies density fluctuations in a system of helical active swimmers. Numerical simulations, supported by a fluctuating hydrodynamic theory, show that helicity induces singular density correlations and hyperuniformity in the direction perpendicular to the torque, while giant density fluctuations emerge along the parallel direction.

#AdvancingField #SoftMatterSpotlight

Consistent set of thermophysical properties of methane curated with machine learning

Matheus Máximo-Canadas, Rubens Caio Souza, Julio Cesar Duarte, Jakler Nichele, Leonardo Santos de Brito Alves, Luiz Octavio Vieira Pereira, Ligia Gaigher Franco, and Itamar Borges, Jr.

Phys. Rev. E 112, 045427 (2025) - Published 27 October, 2025

Concentration-polarization electrophoresis of charged colloidal dimers: A numerical study

Jose Eladio Flores-Mena, Pablo García-Sánchez, and Antonio Ramos

Phys. Rev. E 112, 045428 (2025) - Published 28 October, 2025

Enhanced water evaporation via coupled capillary transport and gelation in confined nanocrystal systems

Zengbin Wang, Dan Xu, Qun Song, Siyuan Liu, Xintong Meng, Shaohuang Chen, Philipp Vana, and Kai Zhang

Phys. Rev. E 112, 045429 (2025) - Published 28 October, 2025

Effects of overburden pressure on granular shear flows: Multiplicity and chaos

Akhilandeshwari Erram, Manaswita Bose, Partha S. Goswami, and Devang V. Khakhar

Phys. Rev. E 112, 045430 (2025) - Published 29 October, 2025

Conformation and dynamics of active polymers with one end fixed

Song Wu, Jia-Xiang Li, and Yu-Qiang Ma

Phys. Rev. E 112, 045431 (2025) - Published 30 October, 2025

A simulation study of polar active polymers with a fixed end shows how the choice of the fixed point, either the tail or the head, leads to dramatically distinct conformational and dynamical behaviors. Active polymers with a fixed tail undergo nonuniform stretching, while those with a fixed head experience uniform compression.

#SoftMatterSpotlight #UniversalBehavior #WellStructured

Shear flow of frictional spheroids: Comparison between elongated and flattened particles

Jacopo Bilotto, Martin Trulsson, and Jean-François Molinari

Phys. Rev. E 112, 045432 (2025) - Published 30 October, 2025

Excitability and traveling waves in renewable active matter

M. Abhishek, Ankit Dhanuka, Deb Sankar Banerjee, and Madan Rao

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Finite-temperature properties of the Frenkel-Kontorova model: Relation to tribological systems and fluid rheology

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Crossover of critical behavior in dynamic phase transitions of multilayer Ising model systems

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When orthogonal detrending matters in roughness scaling

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Collective actuation in active solids in the presence of a polarizing field: A systematic analysis of the dynamical regimes

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Unified description of viscous, viscoelastic, or elastic thin active films on substrates

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