Volume 109, Issue 6

June 2024

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Behavioral transition of a fish school in a crowded environment

Bruno Ventéjou, Iris Magniez- -Papillon, Eric Bertin, Philippe Peyla, and Aurélie Dupont

Phys. Rev. E 109, 064403 (2024) - Published 11 June, 2024

This is an investigation of collective motion of fish swimming in the presence of obstacles. The authors analyzed trajectories of zebrafish swimming in a tank with varying densities of pillars. As the density of pillars increased, the experiments exhibited a transition from mostly aligned fish, to fish oriented along the axes of the pillar lattice. The authors considered the relative orientations of two fish and developed a stochastic model, which qualitatively reproduced the experimental data.

EDITORS' SUGGESTION

Universal characterization of epitope immunodominance from a multiscale model of clonal competition in germinal centers

Federica Ferretti and Mehran Kardar

Phys. Rev. E 109, 064409 (2024) - Published 20 June, 2024

The authors introduce a model for B cell affinity maturation, the process by which a B cell acquires specificity for an introduced antigen. They consider how vaccination with two antigens with the same subdominant antigenic region affects the antibody pool. Their results suggest guidelines for preparation of antigen cocktails that generate broadly neutralizing antibodies.

EDITORS' SUGGESTION

Space-resolved dynamic light scattering within a millimeter-sized drop: From Brownian diffusion to the swelling of hydrogel beads

Matteo Milani, Ty Phou, Guillame Prevot, Laurence Ramos, and Luca Cipelletti

Phys. Rev. E 109, 064613 (2024) - Published 27 June, 2024

Photon correlation spectroscopy is used to examine microscopic dynamics of Brownian suspensions within small spherical droplets. The authors first validate the setup and then demonstrate the method with a study of the shrinking and swelling of millimeter-sized polymer hydrogel beads. Their space-resolved measurements provide new information on microscopic rearrangements occurring during gel swelling.

EDITORS' SUGGESTION

Phase-space entropy cascade and irreversibility of stochastic heating in nearly collisionless plasma turbulence

Michael L. Nastac, Robert J. Ewart, Wrick Sengupta, Alexander A. Schekochihin, Michael Barnes, and William D. Dorland

Phys. Rev. E 109, 065210 (2024) - Published 14 June, 2024

This paper investigates, by means of an analytically solvable one-dimensional model, the dissipation in a turbulent, nearly collisionless plasma. When applying a stochastic, external electric field, it is reported that the generalized entropy of the distribution function cascades from large to small scales in position and velocity space, rendering the stochastic heating irreversible.

PERSPECTIVES

PERSPECTIVE

Soliton gas: Theory, numerics, and experiments

Pierre Suret, Stephane Randoux, Andrey Gelash, Dmitry Agafontsev, Benjamin Doyon, and Gennady El

Phys. Rev. E 109, 061001 (2024) - Published 11 June, 2024

The study of soliton gases, large ensembles of interacting solitons, has received rapidly growing interest due to deep connections with other phenomena and various areas of physics. This Perspective reviews the main recent theoretical and experimental results in the field, and discusses various open questions and future challenges.

LETTERS

Statistical Physics

LETTER

Effect of disorder on phases across two-dimensional thermal melting

Prashanti Jami, Pinaki Chaudhuri, Chandan Dasgupta, and Amit Ghosal

Phys. Rev. E 109, L062101 (2024) - Published 3 June, 2024

LETTER

Entropic timescales of dynamic heterogeneity in supercooled liquid

Vinay Vaibhav and Suman Dutta

Phys. Rev. E 109, L062102 (2024) - Published 6 June, 2024

LETTER

Two rhombic ice phases from aqueous salt solutions under graphene confinement

Wei Du, Yangjie Wang, Junwei Yang, and Jige Chen

Phys. Rev. E 109, L062103 (2024) - Published 10 June, 2024

LETTER

Rectification of heat current in Corbino geometry

Zhixing Zou, Giulio Casati, Giuliano Benenti, and Jiao Wang

Phys. Rev. E 109, L062104 (2024) - Published 24 June, 2024

Nonlinear Dynamics and Chaos

LETTER

Quantum diffusion induced by small quantum chaos

Hiroaki S. Yamada and Kensuke S. Ikeda

Phys. Rev. E 109, L062201 (2024) - Published 3 June, 2024

Networks and Complex Systems

LETTER

Tale of two emergent games: Opinion dynamics in dynamical directed networks

Yakun Wang and Bin Wu

Phys. Rev. E 109, L062301 (2024) - Published 6 June, 2024

Colloids, Complex Fluids, and Active Matter

LETTER

Controlled creation of point defects in three-dimensional colloidal crystals

Max P. M. Schelling and Janne-Mieke Meijer

Phys. Rev. E 109, L062601 (2024) - Published 4 June, 2024

LETTER

Robustness of traveling states in generic nonreciprocal mixtures

Rituparno Mandal, Santiago Salazar Jaramillo, and Peter Sollich

Phys. Rev. E 109, L062602 (2024) - Published 5 June, 2024

LETTER

Critical-like slowdown in thermal soft-sphere glasses via energy minimization

Kevin A. Interiano-Alberto, Peter K. Morse, and Robert S. Hoy

Phys. Rev. E 109, L062603 (2024) - Published 24 June, 2024

ARTICLES

Statistical Physics

Full-record statistics of one-dimensional random walks

Léo Régnier, Maxim Dolgushev, and Olivier Bénichou

Phys. Rev. E 109, 064101 (2024) - Published 3 June, 2024

Constants of motion characterizing continuous symmetry-broken phases

Ángel L. Corps, Jorge Dukelsky, and Armando Relaño

Phys. Rev. E 109, 064102 (2024) - Published 3 June, 2024

Evaluating extractable work of quantum batteries via entropic uncertainty relations

Meng-Long Song, Xue-Ke Song, Liu Ye, and Dong Wang

Phys. Rev. E 109, 064103 (2024) - Published 3 June, 2024

Percolation thresholds of disks with random nonoverlapping patches on four regular two-dimensional lattices

Jie Wang, Xuebin Wang, Wenli Liu, and Hao Hu

Phys. Rev. E 109, 064104 (2024) - Published 3 June, 2024

Triadic interaction in the background of a pairwise spin-glass

M. Bagherikalhor, B. Askari, and G. R. Jafari

Phys. Rev. E 109, 064105 (2024) - Published 3 June, 2024

Short-time expansion of one-dimensional Fokker-Planck equations with heterogeneous diffusion

Tom Dupont, Stefano Giordano, Fabrizio Cleri, and Ralf Blossey

Phys. Rev. E 109, 064106 (2024) - Published 3 June, 2024

Out-of-equilibrium scaling of the energy density along the critical relaxational flow after a quench of the temperature

Haralambos Panagopoulos and Ettore Vicari

Phys. Rev. E 109, 064107 (2024) - Published 3 June, 2024

Hyperuniformity classes of quasiperiodic tilings via diffusion spreadability

Adam Hitin-Bialus, Charles Emmett Maher, Paul J. Steinhardt, and Salvatore Torquato

Phys. Rev. E 109, 064108 (2024) - Published 3 June, 2024

Dynamic redundancy as a mechanism to optimize collective random searches

Daniel Campos and Vicenç Méndez

Phys. Rev. E 109, 064109 (2024) - Published 3 June, 2024

Excited-state quantum phase transitions and the entropy of the work distribution in the anharmonic Lipkin-Meshkov-Glick model

Haiting Zhang, Yifan Qian, Zhen-Xia Niu, and Qian Wang

Phys. Rev. E 109, 064110 (2024) - Published 4 June, 2024

Integral fluctuation theorems and trace-preserving map

Zhiqiang Huang (黄志强)

Phys. Rev. E 109, 064111 (2024) - Published 4 June, 2024

Information thermodynamics of transition paths between multiple mesostates

Miranda D. Louwerse and David A. Sivak

Phys. Rev. E 109, 064112 (2024) - Published 4 June, 2024

Three-dimensional Heisenberg model with Dzyaloshinskii-Moriya interaction: A Monte Carlo study

G. Albuquerque Silva, A. R. Bergeron, J. A. Plascak, and D. P. Landau

Phys. Rev. E 109, 064113 (2024) - Published 6 June, 2024

Finite-size correction and variance of the mutual information of random linear estimation with non-Gaussian priors: A replica calculation

Theodoros G. Tsironis and Aris L. Moustakas

Phys. Rev. E 109, 064114 (2024) - Published 6 June, 2024

Chaotic route to classical thermalization: A real-space analysis

Yue Liu and Dahai He

Phys. Rev. E 109, 064115 (2024) - Published 6 June, 2024

Irreversibility of stochastic state transitions in Langevin systems with odd elasticity

Kento Yasuda

Phys. Rev. E 109, 064116 (2024) - Published 6 June, 2024

Diffusion with a broad class of stochastic diffusion coefficients

Go Uchida, Hitoshi Washizu, and Hiromi Miyoshi

Phys. Rev. E 109, 064117 (2024) - Published 7 June, 2024

Effect of shape anisotropy on percolation of aligned and overlapping objects on lattices

Jasna C. K. and V. Sasidevan

Phys. Rev. E 109, 064118 (2024) - Published 7 June, 2024

Noisy kinetic-exchange opinion model with aging

Allan R. Vieira, Jaume Llabrés, Raúl Toral, and Celia Anteneodo

Phys. Rev. E 109, 064119 (2024) - Published 7 June, 2024

Thermodynamics of a minimal interacting heat engine: Comparison between engine designs

Felipe Hawthorne, B. Cleuren, and Carlos E. Fiore

Phys. Rev. E 109, 064120 (2024) - Published 7 June, 2024

Minimal quantum heat pump based on high-frequency driving and non-Markovianity

Manuel Alamo, Francesco Petiziol, and André Eckardt

Phys. Rev. E 109, 064121 (2024) - Published 7 June, 2024

Kardar-Parisi-Zhang universality in two-component driven diffusive models: Symmetry and renormalization group perspectives

Pritha Dolai, Aditi Simha, and Abhik Basu

Phys. Rev. E 109, 064122 (2024) - Published 7 June, 2024

Neural-network quantum-state study of the long-range antiferromagnetic Ising chain

Jicheol Kim, Dongkyu Kim, and Dong-Hee Kim

Phys. Rev. E 109, 064123 (2024) - Published 10 June, 2024

Observation of multiple attractors and diffusive transport in a periodically driven Klein-Gordon chain

Umesh Kumar, Seemant Mishra, Anupam Kundu, and Abhishek Dhar

Phys. Rev. E 109, 064124 (2024) - Published 10 June, 2024

Compression-induced crossovers for the ground state of classical dipole lattices on a Möbius strip

A. Siemens, F. A. O. Silveira, and P. Schmelcher

Phys. Rev. E 109, 064125 (2024) - Published 11 June, 2024

Semiconductor laser systems excited by multiplicative Ornstein-Uhlenbeck noise and additive sine-Wiener noise in relation to real and imaginary parts

Ping Han, Guitian He, Zhenhui Huang, and Fengjia Guo

Phys. Rev. E 109, 064126 (2024) - Published 11 June, 2024

Wave turbulence and the kinetic equation beyond leading order

Vladimir Rosenhaus and Michael Smolkin

Phys. Rev. E 109, 064127 (2024) - Published 11 June, 2024

Thermodynamic cost for precision of general counting observables

Patrick Pietzonka and Francesco Coghi

Phys. Rev. E 109, 064128 (2024) - Published 11 June, 2024

Work and efficiency fluctuations in a quantum Otto cycle with idle levels

Maron F. Anka, Thiago R. de Oliveira, and Daniel Jonathan

Phys. Rev. E 109, 064129 (2024) - Published 13 June, 2024

Exact zeros of fidelity in finite-size systems as a signature for probing quantum phase transitions

Yumeng Zeng, Bozhen Zhou, and Shu Chen

Phys. Rev. E 109, 064130 (2024) - Published 13 June, 2024

Interplay of phase segregation and chemical reaction: Crossover and effect on growth laws

Shubham Thwal and Suman Majumder

Phys. Rev. E 109, 064131 (2024) - Published 13 June, 2024

Qubit reset with a shortcut-to-isothermal scheme

Hong-Bo Huang, Geng Li, and Hui Dong

Phys. Rev. E 109, 064132 (2024) - Published 13 June, 2024

Transverse forces and glassy liquids in infinite dimensions

Federico Ghimenti, Ludovic Berthier, Grzegorz Szamel, and Frédéric van Wijland

Phys. Rev. E 109, 064133 (2024) - Published 13 June, 2024

Statistics of quantum heat in the Caldeira-Leggett model

Ze-Zhou Zhang, Qing-Shou Tan, and Wei Wu

Phys. Rev. E 109, 064134 (2024) - Published 14 June, 2024

Identifying and analyzing power-law scaling in two-dimensional image datasets

Ralph Bulanadi and Patrycja Paruch

Phys. Rev. E 109, 064135 (2024) - Published 17 June, 2024

From noise on the sites to noise on the links: Discretizing the conserved Kardar-Parisi-Zhang equation in real space

Andrea Cavagna, Javier Cristín, Irene Giardina, and Mario Veca

Phys. Rev. E 109, 064136 (2024) - Published 17 June, 2024

Kuramoto model subject to subsystem resetting: How resetting a part of the system may synchronize the whole of it

Rupak Majumder, Rohitashwa Chattopadhyay, and Shamik Gupta

Phys. Rev. E 109, 064137 (2024) - Published 17 June, 2024

Work fluctuation theorems with initial quantum coherence

Gianluca Francica and Luca Dell'Anna

Phys. Rev. E 109, 064138 (2024) - Published 17 June, 2024

Effective temperatures in nonequilibrium statistical physics

J. S. Langer

Phys. Rev. E 109, 064139 (2024) - Published 18 June, 2024

Extinction and coexistence in a binary mixture of proliferating motile disks

Alejandro Almodóvar, Tobias Galla, and Cristóbal López

Phys. Rev. E 109, 064140 (2024) - Published 18 June, 2024

Statistical physics of principal minors: Cavity approach

A. Ramezanpour and M. A. Rajabpour

Phys. Rev. E 109, 064141 (2024) - Published 18 June, 2024

Strong-coupling critical behavior in three-dimensional lattice Abelian gauge models with charged $N$ -component scalar fields and $SO (N)$ symmetry

Claudio Bonati, Andrea Pelissetto, and Ettore Vicari

Phys. Rev. E 109, 064142 (2024) - Published 18 June, 2024

Ordering kinetics in the active Ising model

Sayam Bandyopadhyay, Swarnajit Chatterjee, Aditya Kumar Dutta, Mintu Karmakar, Heiko Rieger, and Raja Paul

Phys. Rev. E 109, 064143 (2024) - Published 20 June, 2024

Aging and confinement in subordinated fractional Brownian motion

Yingjie Liang, Wei Wang, and Ralf Metzler

Phys. Rev. E 109, 064144 (2024) - Published 20 June, 2024

Semiclassical thermodynamic geometry

L. F. Escamilla-Herrera, J. L. López-Picón, José Torres-Arenas, and Alejandro Gil-Villegas

Phys. Rev. E 109, 064145 (2024) - Published 20 June, 2024

Detuning effects for heat-current control in quantum thermal devices

André H. A. Malavazi, Borhan Ahmadi, Paweł Mazurek, and Antonio Mandarino

Phys. Rev. E 109, 064146 (2024) - Published 20 June, 2024

Self-phoretic oscillatory motion in a harmonic trap

Arthur Alexandre, Leah Anderson, Thomas Collin-Dufresne, Thomas Guérin, and David S. Dean

Phys. Rev. E 109, 064147 (2024) - Published 21 June, 2024

Stochastic dynamics of a non-Markovian random walk in the presence of resetting

Upendra Harbola

Phys. Rev. E 109, 064148 (2024) - Published 21 June, 2024

Scaling regimes of the one-dimensional phase turbulence in the deterministic complex Ginzburg-Landau equation

Francesco Vercesi, Susie Poirier, Anna Minguzzi, and Léonie Canet

Phys. Rev. E 109, 064149 (2024) - Published 24 June, 2024

Instability in the quantum restart problem

Ruoyu Yin, Qingyuan Wang, and Eli Barkai

Phys. Rev. E 109, 064150 (2024) - Published 24 June, 2024

Noise correlations behind superdiffusive quantum walks

Graça R. M. de Almeida, N. Amaral, A. R. C. Buarque, and W. S. Dias

Phys. Rev. E 109, 064151 (2024) - Published 24 June, 2024

Conformal invariance and composite operators: A strategy for improving the derivative expansion of the nonperturbative renormalization group

Bertrand Delamotte, Gonzalo De Polsi, Matthieu Tissier, and Nicolás Wschebor

Phys. Rev. E 109, 064152 (2024) - Published 24 June, 2024

Characterizing the conditions for indefinite growth in open chemical reaction networks

Shesha Gopal Marehalli Srinivas, Francesco Avanzini, and Massimiliano Esposito

Phys. Rev. E 109, 064153 (2024) - Published 25 June, 2024

Random sequential adsorption with correlated defects : A series expansion approach

G. Palacios, A. M. S. Macêdo, Sumanta Kundu, and M. A. F. Gomes

Phys. Rev. E 109, 064154 (2024) - Published 26 June, 2024

Refined bounds on energy harvesting from anisotropic fluctuations

Jordi Ventura Siches, Olga Movilla Miangolarra, and Tryphon T. Georgiou

Phys. Rev. E 109, 064155 (2024) - Published 26 June, 2024

Nonlinear dielectric response in glass formers: Restoring forces and avoided spin-glass criticality

Eric Bertin and François Ladieu

Phys. Rev. E 109, 064156 (2024) - Published 28 June, 2024

Nonlinear Dynamics and Chaos

Semivortex solitons and their excited states in spin-orbit-coupled binary bosonic condensates

Haiming Deng, Jinqing Li, Zhaopin Chen, Yaohui Liu, Dong Liu, Chunzhi Jiang, Chao Kong, and Boris A. Malomed

Phys. Rev. E 109, 064201 (2024) - Published 3 June, 2024

Generalized naming game and Bayesian naming game as dynamical systems

Gionni Marchetti

Phys. Rev. E 109, 064202 (2024) - Published 3 June, 2024

Stability of twisted states in power-law-coupled Kuramoto oscillators on a circle with and without time delay

Hae Seong Lee, Beom Jun Kim, and Hye Jin Park

Phys. Rev. E 109, 064203 (2024) - Published 4 June, 2024

Soliton synchronization in microresonators with a modulated pump

Jorge Palacio Mizrahi, Logan Courtright, Pradyoth Shandilya, Curtis R. Menyuk, and Omri Gat

Phys. Rev. E 109, 064204 (2024) - Published 5 June, 2024

Self-learning physical reservoir computer

Md Raf E Ul Shougat, XiaoFu Li, and Edmon Perkins

Phys. Rev. E 109, 064205 (2024) - Published 5 June, 2024

Quasi-one- and quasi-two-dimensional symbiotic solitons bound by dipolar interaction

S. K. Adhikari

Phys. Rev. E 109, 064206 (2024) - Published 6 June, 2024

Characterization of hybrid quantum eigenstates in systems with mixed classical phase space

Anant Vijay Varma, Amichay Vardi, and Doron Cohen

Phys. Rev. E 109, 064207 (2024) - Published 10 June, 2024

Generalized spectral form factor in random matrix theory

Zhiyang Wei, Chengming Tan, and Ren Zhang

Phys. Rev. E 109, 064208 (2024) - Published 11 June, 2024

Elliptic-rogue waves and modulational instability in nonlinear soliton equations

Liming Ling and Xuan Sun

Phys. Rev. E 109, 064209 (2024) - Published 17 June, 2024

Delayed self-feedback echo state network for long-term dynamics of hyperchaotic systems

Xu Xu, Jianming Liu, and Eric Li

Phys. Rev. E 109, 064210 (2024) - Published 17 June, 2024

Diffusion of noiseless active particles in a planar convection array

Qingqing Yin, Jianli Liu, Yunyun Li, and Fabio Marchesoni

Phys. Rev. E 109, 064211 (2024) - Published 17 June, 2024

Multifractal perturbations to multiplicative cascades promote multifractal nonlinearity with asymmetric spectra

Madhur Mangalam and Damian G. Kelty-Stephen

Phys. Rev. E 109, 064212 (2024) - Published 17 June, 2024

Robust design against frequency variation for amplitude death in delay-coupled oscillators

Yoshiki Sugitani, Kensei Kawahara, and Keiji Konishi

Phys. Rev. E 109, 064213 (2024) - Published 18 June, 2024

Emergence of order from chaos through a continuous phase transition in a turbulent reactive flow system

Sivakumar Sudarsanan, Amitesh Roy, Induja Pavithran, Shruti Tandon, and R. I. Sujith

Phys. Rev. E 109, 064214 (2024) - Published 20 June, 2024

Application of next-generation reservoir computing for predicting chaotic systems from partial observations

Irmantas Ratas and Kestutis Pyragas

Phys. Rev. E 109, 064215 (2024) - Published 21 June, 2024

Dynamics of multidimensional fundamental and vortex solitons in random media

Volodymyr M. Lashkin

Phys. Rev. E 109, 064216 (2024) - Published 26 June, 2024

Intermittent generalized synchronization and modified system approach: Discrete maps

Alexey A. Koronovskii, Olga I. Moskalenko, and Anton O. Selskii

Phys. Rev. E 109, 064217 (2024) - Published 27 June, 2024

Singular bifurcations and regularization theory

Alexander Farutin and Chaouqi Misbah

Phys. Rev. E 109, 064218 (2024) - Published 27 June, 2024

Soliton in Bose-Einstein condensates with helicoidal spin-orbit coupling under a Zeeman lattice

Pingping Fang and Ji Lin

Phys. Rev. E 109, 064219 (2024) - Published 28 June, 2024

Networks and Complex Systems

Eigenvalue spectra of finely structured random matrices

Lyle Poley, Tobias Galla, and Joseph W. Baron

Phys. Rev. E 109, 064301 (2024) - Published 3 June, 2024

Temporal local clustering coefficient uncovers the hidden pattern in temporal networks

Bofan Chen, Guyu Hou, and Aming Li

Phys. Rev. E 109, 064302 (2024) - Published 5 June, 2024

Data-driven exploration of swarmalators with second-order harmonics

R. Senthamizhan, R. Gopal, and V. K. Chandrasekar

Phys. Rev. E 109, 064303 (2024) - Published 6 June, 2024

Simple evolving random graphs

P. L. Krapivsky

Phys. Rev. E 109, 064304 (2024) - Published 10 June, 2024

Robustness of Turing models and gene regulatory networks with a sweet spot

Roozbeh H. Pazuki and Robert G. Endres

Phys. Rev. E 109, 064305 (2024) - Published 11 June, 2024

Topological and spectral properties of random digraphs

C. T. Martínez-Martínez, J. A. Méndez-Bermúdez, and José M. Sigarreta

Phys. Rev. E 109, 064306 (2024) - Published 12 June, 2024

Cascading failures in bipartite networks with directional support links

Bo Tong, David S. Roth, and Sergey V. Buldyrev

Phys. Rev. E 109, 064307 (2024) - Published 17 June, 2024

Proliferation of unstable states and their impact on stochastic out-of-equilibrium dynamics in two coupled Kerr parametric oscillators

Toni L. Heugel, R. Chitra, Alexander Eichler, and Oded Zilberberg

Phys. Rev. E 109, 064308 (2024) - Published 20 June, 2024

Spectral properties of the Laplacian of temporal networks following a constant block Jacobi model

Zhana Kuncheva and Ognyan Kounchev

Phys. Rev. E 109, 064309 (2024) - Published 25 June, 2024

Biological Physics

Physical limits to acceleration of enzymatic reactions inside phase-separated compartments

Jeremy D. Schmit and Thomas C. T. Michaels

Phys. Rev. E 109, 064401 (2024) - Published 3 June, 2024

Run-and-tumble kinematics of Enterobacter Sp. SM3

Silverio Johnson, Brian Freedman, and Jay X. Tang

Phys. Rev. E 109, 064402 (2024) - Published 7 June, 2024

EDITORS' SUGGESTION

Behavioral transition of a fish school in a crowded environment

Bruno Ventéjou, Iris Magniez- -Papillon, Eric Bertin, Philippe Peyla, and Aurélie Dupont

Phys. Rev. E 109, 064403 (2024) - Published 11 June, 2024

Gramicidin A as a mechanical sensor for mixed nonideal lipid membranes

Oleg V. Kondrashov and Sergey A. Akimov

Phys. Rev. E 109, 064404 (2024) - Published 11 June, 2024

Combinatorics and topological weights of chromatin loop networks

Andrea Bonato, Michael Chiang, Dom Corbett, Sergey Kitaev, Davide Marenduzzo, Alexander Morozov, and Enzo Orlandini

Phys. Rev. E 109, 064405 (2024) - Published 14 June, 2024

Effective model of protein-mediated interactions in chromatin

Francesco Borando and Guido Tiana

Phys. Rev. E 109, 064406 (2024) - Published 17 June, 2024

Clonal dynamics of surface-driven growing tissues

Ruslan I. Mukhamadiarov, Matteo Ciarchi, Fabrizio Olmeda, and Steffen Rulands

Phys. Rev. E 109, 064407 (2024) - Published 17 June, 2024

Adhesion dynamics of Janus nanocarriers to endothelial cells: A dissipative particle dynamics study

Saeed Akbarishandiz, Shaghayegh Khani, and Joao Maia

Phys. Rev. E 109, 064408 (2024) - Published 18 June, 2024

EDITORS' SUGGESTION

Universal characterization of epitope immunodominance from a multiscale model of clonal competition in germinal centers

Federica Ferretti and Mehran Kardar

Phys. Rev. E 109, 064409 (2024) - Published 20 June, 2024

Local and extensive fluctuations in sparsely interacting ecological communities

Stav Marcus, Ari M. Turner, and Guy Bunin

Phys. Rev. E 109, 064410 (2024) - Published 20 June, 2024

Unbiased estimation of sampling variance for Simpson's diversity index

Andreas Tiffeau-Mayer

Phys. Rev. E 109, 064411 (2024) - Published 21 June, 2024

Unexpected large charge transfer rate mediated by adenine in twisted DNA structure

Yongshun Song, Yi Gao, and Haiping Fang

Phys. Rev. E 109, 064412 (2024) - Published 24 June, 2024

Ultrafast excitonic dynamics in DNA: Bridging correlated quantum dynamics and sequence dependence

Dennis Herb, Mirko Rossini, and Joachim Ankerhold

Phys. Rev. E 109, 064413 (2024) - Published 25 June, 2024

Phase separation provides a mechanism to drive phenotype switching

Lijun Hong, Zhenquan Zhang, Zihao Wang, Xiaochen Yu, and Jiajun Zhang

Phys. Rev. E 109, 064414 (2024) - Published 28 June, 2024

Polymers

Effect of shear flow on the transverse thermal conductivity of polymer melts

Kotaro Oda and Shugo Yasuda

Phys. Rev. E 109, 064501 (2024) - Published 3 June, 2024

Colloids, Complex Fluids, and Active Matter

Lane formation in gravitationally driven colloid mixtures consisting of up to three different particle sizes

Kay Hofmann, Marc Isele, Artur Erbe, Paul Leiderer, and Peter Nielaba

Phys. Rev. E 109, 064601 (2024) - Published 3 June, 2024

Active nematic ratchet in asymmetric obstacle arrays

Cody D. Schimming, C. J. O. Reichhardt, and C. Reichhardt

Phys. Rev. E 109, 064602 (2024) - Published 3 June, 2024

Spheroid models to elaborate the broken symmetry and equivalent volume of molecules in crystalline phase

Weihao Wang, Zhenghong Chen, Yang Gao, Chenhao Chen, Yang Jiao, and Shaodong Zhang

Phys. Rev. E 109, 064603 (2024) - Published 6 June, 2024

Colloidal model for nucleation and aggregation in one dimension: Accessing the interaction parameters

Juan David Álvarez-Cuartas, Manuel Camargo, and Diego Luis González-Cabrera

Phys. Rev. E 109, 064604 (2024) - Published 6 June, 2024

Rescaled mode-coupling scheme for the quantitative description of experimentally observed colloid dynamics

Joel Diaz Maier and Joachim Wagner

Phys. Rev. E 109, 064605 (2024) - Published 7 June, 2024

Periodic orbits, pair nucleation, and unbinding of active nematic defects on cones

Farzan Vafa, David R. Nelson, and Amin Doostmohammadi

Phys. Rev. E 109, 064606 (2024) - Published 7 June, 2024

Finite-size scaling in kinetics of phase separation in certain models of aligning active particles

Tanay Paul, Nalina Vadakkayil, and Subir K. Das

Phys. Rev. E 109, 064607 (2024) - Published 10 June, 2024

Real-space local self-motion of protonated and deuterated water

Yuya Shinohara, Takuya Iwashita, Masahiro Nakanishi, Wojciech Dmowski, Chae Woo Ryu, Douglas L. Abernathy, Daisuke Ishikawa, Alfred Q. R. Baron, and Takeshi Egami

Phys. Rev. E 109, 064608 (2024) - Published 11 June, 2024

Chemical herding as a multiplicative factor for top-down manipulation of colloids

Mark N. McDonald, Douglas R. Tree, and Cameron K. Peterson

Phys. Rev. E 109, 064609 (2024) - Published 12 June, 2024

Thermo-osmosis of a near-critical binary fluid mixture: A general formulation and universal flow direction

Shunsuke Yabunaka and Youhei Fujitani

Phys. Rev. E 109, 064610 (2024) - Published 18 June, 2024

Discovering dynamic laws from observations: The case of self-propelled, interacting colloids

Miguel Ruiz-Garcia, C. Miguel Barriuso G., Lachlan C. Alexander, Dirk G. A. L. Aarts, Luca M. Ghiringhelli, and Chantal Valeriani

Phys. Rev. E 109, 064611 (2024) - Published 26 June, 2024

Macroscopic dynamics of ferromagnetic smectic- $A$

Harald Pleiner and Helmut R. Brand

Phys. Rev. E 109, 064612 (2024) - Published 26 June, 2024

EDITORS' SUGGESTION

Space-resolved dynamic light scattering within a millimeter-sized drop: From Brownian diffusion to the swelling of hydrogel beads

Matteo Milani, Ty Phou, Guillame Prevot, Laurence Ramos, and Luca Cipelletti

Phys. Rev. E 109, 064613 (2024) - Published 27 June, 2024

Liquid Crystals

Polymer-dispersed liquid-crystal coatings for ultrasound visualization: Experiment and theory

O. Trushkevych, V. Reshetnyak, M. Turvey, and R. S. Edwards

Phys. Rev. E 109, 064701 (2024) - Published 5 June, 2024

Topological defects as nucleation points of the nematic-isotropic phase transition in liquid crystal shells

Yucen Han, Jan Lagerwall, and Apala Majumdar

Phys. Rev. E 109, 064702 (2024) - Published 11 June, 2024

Trapping of isotropic droplets by disclinations in nematic liquid crystals controlled by surface anchoring and elastic constant disparity

Nilanthi P. Haputhanthrige, Sathyanarayana Paladugu, Maxim O. Lavrentovich, and Oleg D. Lavrentovich

Phys. Rev. E 109, 064703 (2024) - Published 18 June, 2024

Films and Interfaces

Modeling patchy saturation of fluids in nanoporous media probed by ultrasound and optics

Boris Gurevich, Michel M. Nzikou, and Gennady Y. Gor

Phys. Rev. E 109, 064801 (2024) - Published 13 June, 2024

Dynamical force measurements for contacting soft surfaces upon steady sliding: Fixed-depth tribology

Cheng-En Tsai and Jih-Chiang (JC) Tsai

Phys. Rev. E 109, 064802 (2024) - Published 17 June, 2024

Granular Materials

Rheology of granular particles immersed in a molecular gas under uniform shear flow

Rubén Gómez González, Moisés García Chamorro, and Vicente Garzó

Phys. Rev. E 109, 064901 (2024) - Published 3 June, 2024

Rotational inertia-induced glassy transition in chiral particle systems

Bao-quan Ai, Rui-xue Guo, Chun-hua Zeng, and Ya-feng He

Phys. Rev. E 109, 064902 (2024) - Published 3 June, 2024

Interaction between two large particles in a dry granular shear flow

Nathalie Fraysse, Umberto D'Ortona, and Nathalie Thomas

Phys. Rev. E 109, 064903 (2024) - Published 4 June, 2024

Considerations on the relaxation time in shear-driven jamming

Lucas Hedström and Peter Olsson

Phys. Rev. E 109, 064904 (2024) - Published 6 June, 2024

Estimating random close packing density from circle radius distributions

David J. Meer, Isabela Galoustian, Julio Gabriel de Falco Manuel, and Eric R. Weeks

Phys. Rev. E 109, 064905 (2024) - Published 17 June, 2024

Discharge of rice-shaped particles from a monolayer flat-bottom silo

Muhammad Ahmed Hanif, Devaraj van der Meer, and Diego Maza

Phys. Rev. E 109, 064906 (2024) - Published 18 June, 2024

Air drag controls the runout of small laboratory landslides

Rory T. Cerbus, Ludovic Brivady, Thierry Faug, and Hamid Kellay

Phys. Rev. E 109, 064907 (2024) - Published 20 June, 2024

Drag force regime in dry and immersed granular media

Jiayu Lin, Tao Zhao, and Mingjing Jiang

Phys. Rev. E 109, 064908 (2024) - Published 24 June, 2024

Solid Mechanics

Dislocation random walk under cyclic deformation

Atsushi Kubo, Emi Kawai, Takashi Sumigawa, Hiroyuki Shima, and Yoshitaka Umeno

Phys. Rev. E 109, 065001 (2024) - Published 3 June, 2024

Slow dynamic elasticity at short times

SangMin Lee and Richard L. Weaver

Phys. Rev. E 109, 065002 (2024) - Published 7 June, 2024

Non-Debye to Debye spectral shift in solid solutions of orientationally disordered crystals

Abhishek K. Singh

Phys. Rev. E 109, 065003 (2024) - Published 13 June, 2024

Fluid Dynamics

Dynamo action driven by precessional turbulence

Vivaswat Kumar, Federico Pizzi, George Mamatsashvili, André Giesecke, Frank Stefani, and Adrian J. Barker

Phys. Rev. E 109, 065101 (2024) - Published 5 June, 2024

From cavitation to astrophysics: Explicit solution of the spherical collapse equation

Danail Obreschkow

Phys. Rev. E 109, 065102 (2024) - Published 7 June, 2024

Insights on phase speed and the critical Reynolds number of falling films

Arghya Samanta

Phys. Rev. E 109, 065103 (2024) - Published 10 June, 2024

Molecular dynamics study of the sonic horizon of microscopic Laval nozzles

Helmut Ortmayer and Robert E. Zillich

Phys. Rev. E 109, 065104 (2024) - Published 11 June, 2024

Precipitation-induced filament pattern of injected fluid controlled by a structured cell

Shunsuke Tanaka, Kojiro Otoguro, Miyuki Kunihiro, Hiroki Ishikawa, and Yutaka Sumino

Phys. Rev. E 109, 065105 (2024) - Published 11 June, 2024

Propulsion of a three-sphere microrobot in a porous medium

Chih-Tang Liao, Andrew Lemus, Ali Gürbüz, Alan C. H. Tsang, On Shun Pak, and Abdallah Daddi-Moussa-Ider

Phys. Rev. E 109, 065106 (2024) - Published 13 June, 2024

Generalized scaling laws for the irrotational motions bordering a turbulent region

Marco Zecchetto, Ricardo P. Xavier, Miguel A. C. Teixeira, and Carlos B. da Silva

Phys. Rev. E 109, 065107 (2024) - Published 17 June, 2024

Poles, shocks, and tygers: The time-reversible Burgers equation

Arunava Das, Pinaki Dutta, and Vishwanath Shukla

Phys. Rev. E 109, 065108 (2024) - Published 18 June, 2024

Dual residence time for droplets to coalesce with a liquid surface

Ting-Heng Hsieh, Wei-Chi Li, and Tzay-Ming Hong

Phys. Rev. E 109, 065109 (2024) - Published 18 June, 2024

Plasma Physics

Impact of mid- $Z$ gas fill on dynamics and performance of shock-driven implosions at the OMEGA laser

M. Gatu Johnson, P. J. Adrian, B. D. Appelbe, A. J. Crilly, C. J. Forrest, V. Yu. Glebov, L. M. Green, B. M. Haines, N. V. Kabadi, G. Kagan, B. D. Keenan, J. Kunimune, C. K. Li, O. M. Mannion, R. D. Petrasso, F. H. Séguin, H. W. Sio, C. Stoeckl, G. D. Sutcliffe, W. T. Taitano, and J. A. Frenje

Phys. Rev. E 109, 065201 (2024) - Published 3 June, 2024

Sensitivity of magnetohydrodynamic simulations of Joule-heated conductors to the vaporization curve in equations of state

Seth E. Kreher, Christopher L. Rousculp, Bruno S. Bauer, Trevor M. Hutchinson, Aidan W. Klemmer, Charles E. Starrett, and Edmund P. Yu

Phys. Rev. E 109, 065202 (2024) - Published 4 June, 2024

Direct laser acceleration: A model for the electron injection from the walls of a cylindrical guiding structure

P. Valenta, D. Maslarova, R. Babjak, B. Martinez, S. V. Bulanov, and M. Vranić

Phys. Rev. E 109, 065204 (2024) - Published 5 June, 2024

Generation of attosecond gigawatt soft x-ray pulses through coherent Thomson backscattering

Qianyi Ma, Jiaxin Liu, Zhuo Pan, Xuezhi Wu, Huangang Lu, Zhenan Wang, Yuhui Xia, Yuekai Chen, Kyle G. Miller, Xinlu Xu, and Xueqing Yan

Phys. Rev. E 109, 065205 (2024) - Published 6 June, 2024

Shock wave formation in radiative plasmas

F. Garcia-Rubio, V. Tranchant, E. C. Hansen, A. Reyes, R. Tabassum, H. U. Rahman, P. Ney, E. Ruskov, and P. Tzeferacos

Phys. Rev. E 109, 065206 (2024) - Published 10 June, 2024

Solid-to-plasma transition of polystyrene induced by a nanosecond laser pulse within the context of inertial confinement fusion

R. Liotard, B. Canaud, A. Pineau, A. Sollier, E. Lescoute, A. Colaïtis, and G. Duchateau

Phys. Rev. E 109, 065207 (2024) - Published 12 June, 2024

Self-compression of laser pulses induced by asymmetric self-phase modulation aided by backward Raman scattering in periodic density-modulated plasma

Jiajun Li, Hanchen Xue, Zhaohua Wang, Xianzhi Wang, Jiawen Li, Yingfeng Li, Guodong Zhao, and Zhiyi Wei

Phys. Rev. E 109, 065208 (2024) - Published 13 June, 2024

Shock-ignition effect in indirect-drive inertial confinement fusion approach

S. Yu. Gus'kov and G. A. Vergunova

Phys. Rev. E 109, 065209 (2024) - Published 14 June, 2024

EDITORS' SUGGESTION

Reexamining the Stark width and shift of $He$ ii Paschen- $α$ : Studies using laser-induced plasma, Thomson scattering, and computer simulations

Krzysztof Dzierżęga, Franciszek Sobczuk, Tomasz Krehlik, and Evgeny Stambulchik

Phys. Rev. E 109, 065214 (2024) - Published 27 June, 2024

Computational Physics

Optimal schedules for annealing algorithms

Amin Barzegar, Firas Hamze, Christopher Amey, and Jonathan Machta

Phys. Rev. E 109, 065301 (2024) - Published 6 June, 2024

Simulating dynamics of ellipsoidal particles using lattice Boltzmann method

Sumesh P. Thampi, Kevin Stratford, and Oliver Henrich

Phys. Rev. E 109, 065302 (2024) - Published 7 June, 2024

Direct CALPHAD coupling phase-field model: Closed-form expression for interface composition satisfying equal diffusion potential condition

Takumi Morino, Machiko Ode, and Shoichi Hirosawa

Phys. Rev. E 109, 065303 (2024) - Published 10 June, 2024

Stochastic density functional theory combined with Langevin dynamics for warm dense matter

Rebecca Efrat Hadad, Argha Roy, Eran Rabani, Ronald Redmer, and Roi Baer

Phys. Rev. E 109, 065304 (2024) - Published 11 June, 2024

Macroscopic finite-difference scheme and modified equations of the general propagation multiple-relaxation-time lattice Boltzmann model

Ying Chen, Xi Liu, Zhenhua Chai, and Baochang Shi

Phys. Rev. E 109, 065305 (2024) - Published 12 June, 2024

Three-dimensional lattice Boltzmann model with self-tuning equation of state for multiphase flows

Rongzong Huang, Qing Li, and Yu Qiu

Phys. Rev. E 109, 065306 (2024) - Published 14 June, 2024

Accelerating particle-in-cell kinetic plasma simulations via reduced-order modeling of space-charge dynamics using dynamic mode decomposition

Indranil Nayak, Fernando L. Teixeira, Dong-Yeop Na, Mrinal Kumar, and Yuri A. Omelchenko

Phys. Rev. E 109, 065307 (2024) - Published 17 June, 2024

Impact of random nanoscale roughness on gas-scattering dynamics

Yichong Chen, Livio Gibelli, and Matthew K. Borg

Phys. Rev. E 109, 065308 (2024) - Published 20 June, 2024

Efficient computational model of the in-flow capturing of magnetic nanoparticles by a cylindrical magnet for cancer nanomedicine

Barbara Wirthl, Vitaly Wirthl, and Wolfgang A. Wall

Phys. Rev. E 109, 065309 (2024) - Published 20 June, 2024

Discrete unified gas kinetic scheme for the solution of electron Boltzmann transport equation with Callaway approximation

Meng Lian, Chuang Zhang, Zhaoli Guo, and Jing-Tao Lü

Phys. Rev. E 109, 065310 (2024) - Published 24 June, 2024