EDITORIALS AND ANNOUNCEMENTS

Editorial: First Annual APS DSOFT Gallery of Soft Matter

Olga Shishkov, Arielle Blonder, Savannah Gowen, Trevor J. Jones, Manon Jouanlanne, Qing Zhang, Emanuela Del Gado, and Irmgard Bischofberger

Phys. Rev. E 106, 050001 (2022) - Published 7 November, 2022

HIGHLIGHTED ARTICLES

Pattern of inclusions inside rippled icicles

John Ladan and Stephen W. Morris

Phys. Rev. E 106, 054211 (2022) - Published 17 November, 2022

Some icicles develop surface ripples as they grow. Researchers now explain the growth mechanism, but a full explanation remains elusive.

Controlling the configuration space topology of mechanical structures

M. Berry, David Limberg, M. E. Lee-Trimble, Ryan Hayward, and C. D. Santangelo

Phys. Rev. E 106, 055002 (2022) - Published 7 November, 2022

Linkages are mechanical assemblies of rods connected by rotating joints that are of both practical and theoretical interest. They can be designed to perform certain motions, and this work describes a method to do so more easily by focusing on perturbations around special configurations called branch points.

Hard-sphere jamming through the lens of linear optimization

Claudia Artiaco, Rafael Díaz Hernández Rojas, Giorgio Parisi, and Federico Ricci-Tersenghi

Phys. Rev. E 106, 055310 (2022) - Published 15 November, 2022

Simulating the jamming of hard spheres is difficult because of the singular interaction potential, which is either zero or infinite. This paper analyzes an algorithm that uses a mapping onto a constrained optimization problem to generate jammed hard-sphere packings that satisfy force balance and are globally stable.

Sequence of phase transitions in a model of interacting rods

Juliane U. Klamser, Tridib Sadhu, and Deepak Dhar

Phys. Rev. E 106, L052101 (2022) - Published 3 November, 2022

This article studies a system of rods pinned on a lattice with only rotational degrees of freedom, using Monte Carlo simulations. The system shows an infinite number of phase transitions as a function of the inverse temperature and the relative size of the rod with respect to the lattice, that can be broadly characterized as either Ising-like or of geometrical origin.

Fitting an active Brownian particle's mean-squared displacement with improved parameter estimation

Maximilian R. Bailey, Alexander R. Sprenger, Fabio Grillo, Hartmut Löwen, and Lucio Isa

Phys. Rev. E 106, L052602 (2022) - Published 22 November, 2022

Active matter experiments are often analyzed in terms of the active Brownian particle model. In this paper the authors show that a commonly used approximation to estimate model parameters can lead to erroneous results, and they propose an improved procedure.

LETTERS

Statistical Physics

Sequence of phase transitions in a model of interacting rods

Juliane U. Klamser, Tridib Sadhu, and Deepak Dhar

Phys. Rev. E 106, L052101 (2022) - Published 3 November, 2022

This article studies a system of rods pinned on a lattice with only rotational degrees of freedom, using Monte Carlo simulations. The system shows an infinite number of phase transitions as a function of the inverse temperature and the relative size of the rod with respect to the lattice, that can be broadly characterized as either Ising-like or of geometrical origin.

Stiffening or softening of elastic media: Anomalous elasticity near phase transitions

Sudip Mukherjee and Abhik Basu

Phys. Rev. E 106, L052102 (2022) - Published 14 November, 2022

Nonlinear Dynamics and Chaos

Heterogeneity-induced synchronization in delay-coupled electronic oscillators

Nirmal Punetha and Lucas Wetzel

Phys. Rev. E 106, L052201 (2022) - Published 30 November, 2022

Colloids, Complex Fluids, and Active Matter

Universal scaling for disordered viscoelastic matter near the onset of rigidity

Danilo B. Liarte, Stephen J. Thornton, Eric Schwen, Itai Cohen, Debanjan Chowdhury, and James P. Sethna

Phys. Rev. E 106, L052601 (2022) - Published 7 November, 2022

Fitting an active Brownian particle's mean-squared displacement with improved parameter estimation

Maximilian R. Bailey, Alexander R. Sprenger, Fabio Grillo, Hartmut Löwen, and Lucio Isa

Phys. Rev. E 106, L052602 (2022) - Published 22 November, 2022

Active matter experiments are often analyzed in terms of the active Brownian particle model. In this paper the authors show that a commonly used approximation to estimate model parameters can lead to erroneous results, and they propose an improved procedure.

Films and Interfaces

Universal fast mode regime in wetting kinetics

Syed Shuja Hasan Zaidi, Prabhat K. Jaiswal, Madhu Priya, and Sanjay Puri

Phys. Rev. E 106, L052801 (2022) - Published 1 November, 2022

Granular Materials

Secondary flow in ensembles of nonconvex granular particles under shear

Mahdieh Mohammadi, Dmitry Puzyrev, Torsten Trittel, and Ralf Stannarius

Phys. Rev. E 106, L052901 (2022) - Published 3 November, 2022

Emergent power-law interactions in near-crystalline membranes

Pappu Acharya, Debankur Das, Surajit Sengupta, and Kabir Ramola

Phys. Rev. E 106, L052902 (2022) - Published 28 November, 2022

High-energy velocity tails in uniformly heated granular materials

Yangrui Chen and Jie Zhang

Phys. Rev. E 106, L052903 (2022) - Published 30 November, 2022

Plasma Physics

Measurements of ion-electron energy-transfer cross section in high-energy-density plasmas

P. J. Adrian, R. Florido, P. E. Grabowski, R. Mancini, B. Bachmann, L. X. Benedict, M. Gatu Johnson, N. Kabadi, B. Lahmann, C. K. Li, R. D. Petrasso, H. G. Rinderknecht, S. P. Regan, F. H. Séguin, R. L. Singleton, Jr., H. Sio, G. D. Sutcliffe, H. D. Whitley, and J. A. Frenje

Phys. Rev. E 106, L053201 (2022) - Published 8 November, 2022

ARTICLES

Statistical Physics

Closest-vector problem and the zero-temperature p-spin landscape for lossy compression

Alfredo Braunstein, Louise Budzynski, Stefano Crotti, and Federico Ricci-Tersenghi

Phys. Rev. E 106, 054101 (2022) - Published 1 November, 2022

Geometric quantum thermodynamics

Fabio Anza and James P. Crutchfield

Phys. Rev. E 106, 054102 (2022) - Published 1 November, 2022

From random walks on networks to nonlinear diffusion

Carles Falcó

Phys. Rev. E 106, 054103 (2022) - Published 1 November, 2022

Characteristic quantum phase in Heisenberg antiferromagnetic chain with exchange and single-ion anisotropies

Yan-Wei Dai, Xi-Jing Liu, Sheng-Hao Li, and Ai-Min Chen

Phys. Rev. E 106, 054104 (2022) - Published 2 November, 2022

Incompleteness of the large-N analysis of the O(N) models: Nonperturbative cuspy fixed points and their nontrivial homotopy at finite N

S. Yabunaka, C. Fleming, and B. Delamotte

Phys. Rev. E 106, 054105 (2022) - Published 2 November, 2022

Local orderings in the melting process of a square crystal and in the resulting liquid

E. O. Lima, P. C. N. Pereira, and S. W. S. Apolinario

Phys. Rev. E 106, 054106 (2022) - Published 3 November, 2022

Environment-mediated entropic uncertainty in charging quantum batteries

Meng-Long Song, Li-Juan Li, Xue-Ke Song, Liu Ye, and Dong Wang

Phys. Rev. E 106, 054107 (2022) - Published 3 November, 2022

Optimizing Brownian heat engine with shortcut strategy

Jin-Fu Chen

Phys. Rev. E 106, 054108 (2022) - Published 3 November, 2022

Coarse graining in time with the functional renormalization group: Relaxation in Brownian motion

Ashley Wilkins, Gerasimos Rigopoulos, and Enrico Masoero

Phys. Rev. E 106, 054109 (2022) - Published 3 November, 2022

Time to reach the maximum for a stationary stochastic process

Francesco Mori, Satya N. Majumdar, and Grégory Schehr

Phys. Rev. E 106, 054110 (2022) - Published 3 November, 2022

Residual entropy of the dilute Ising chain in a magnetic field

Yury Panov

Phys. Rev. E 106, 054111 (2022) - Published 4 November, 2022

Impurity reveals distinct operational phases in quantum thermodynamic cycles

Aditya Prakash, Abhishek Kumar, and Colin Benjamin

Phys. Rev. E 106, 054112 (2022) - Published 4 November, 2022

Experimental verification of arcsine laws in mesoscopic nonequilibrium systems

Raunak Dey, Avijit Kundu, Biswajit Das, and Ayan Banerjee

Phys. Rev. E 106, 054113 (2022) - Published 4 November, 2022

Heat transport and rectification via quantum statistical and coherence asymmetries

Stephania Palafox, Ricardo Román-Ancheyta, Barış Çakmak, and Özgür E. Müstecaplıoğlu

Phys. Rev. E 106, 054114 (2022) - Published 7 November, 2022

Planted XY model: Thermodynamics and inference

Siyu Chen, Guanhao Huang, Giovanni Piccioli, and Lenka Zdeborová

Phys. Rev. E 106, 054115 (2022) - Published 7 November, 2022

Diffusion with partial resetting

Ofir Tal-Friedman, Yael Roichman, and Shlomi Reuveni

Phys. Rev. E 106, 054116 (2022) - Published 7 November, 2022

Brownian ratchet for directional nanoparticle transport by repetitive stretch-relaxation of DNA

Inrok Oh, Jeongeun Song, Hye Ree Hyun, Sang Hak Lee, and Jun Soo Kim

Phys. Rev. E 106, 054117 (2022) - Published 7 November, 2022

Nonequilibrium steady state for harmonically confined active particles

Naftali R. Smith and Oded Farago

Phys. Rev. E 106, 054118 (2022) - Published 7 November, 2022

Quantum enhancement of a single quantum battery by repeated interactions with large spins

P. Chen, T. S. Yin, Z. Q. Jiang, and G. R. Jin

Phys. Rev. E 106, 054119 (2022) - Published 7 November, 2022

Thermodynamics and criticality of su(m) spin chains of Haldane-Shastry type

Federico Finkel and Artemio González-López

Phys. Rev. E 106, 054120 (2022) - Published 8 November, 2022

Statistics of extreme turbulent circulation events from multifractality breaking

L. Moriconi and R. M. Pereira

Phys. Rev. E 106, 054121 (2022) - Published 8 November, 2022

Shortcuts to adiabaticity for Lévy processes in harmonic traps

Marco Baldovin, David Guéry-Odelin, and Emmanuel Trizac

Phys. Rev. E 106, 054122 (2022) - Published 8 November, 2022

Random matrix analysis of deep neural network weight matrices

Matthias Thamm, Max Staats, and Bernd Rosenow

Phys. Rev. E 106, 054124 (2022) - Published 9 November, 2022

Continuum mechanics of nonideal crystals: Microscopic approach based on projection-operator formalism

Florian Miserez, Saswati Ganguly, Rudolf Haussmann, and Matthias Fuchs

Phys. Rev. E 106, 054125 (2022) - Published 10 November, 2022

Unitary evolution for a two-level quantum system in fractional-time scenario

D. Cius, L. Menon, Jr., M. A. F. dos Santos, A. S. M. de Castro, and Fabiano M. Andrade

Phys. Rev. E 106, 054126 (2022) - Published 10 November, 2022

Wave transmission and its universal fluctuations in one-dimensional systems with Lévy-like disorder: Schrödinger, Klein-Gordon, and Dirac equations

Anderson L. R. Barbosa, Jonas R. F. Lima, and Luiz Felipe C. Pereira

Phys. Rev. E 106, 054127 (2022) - Published 10 November, 2022

Statistical mechanics of phase transitions in elastic media with vanishing thermal expansion

Sudip Mukherjee and Abhik Basu

Phys. Rev. E 106, 054128 (2022) - Published 14 November, 2022

Most general class of quasiprobability distributions of work

Gianluca Francica

Phys. Rev. E 106, 054129 (2022) - Published 14 November, 2022

Liquid-hexatic-solid phases in active and passive Brownian particles determined by stochastic birth and death events

Alejandro Almodóvar, Tobias Galla, and Cristóbal López

Phys. Rev. E 106, 054130 (2022) - Published 14 November, 2022

Work extraction from single-mode thermal noise by measurements: How important is information?

Avijit Misra, Tomáš Opatrný, and Gershon Kurizki

Phys. Rev. E 106, 054131 (2022) - Published 14 November, 2022

Entropic exponents of grafted lattice stars

E. J. Janse van Rensburg

Phys. Rev. E 106, 054132 (2022) - Published 14 November, 2022

Exact position distribution of a harmonically confined run-and-tumble particle in two dimensions

Naftali R. Smith, Pierre Le Doussal, Satya N. Majumdar, and Grégory Schehr

Phys. Rev. E 106, 054133 (2022) - Published 14 November, 2022

Topological origin of the protein folding transition

Loris Di Cairano, Riccardo Capelli, Ghofrane Bel-Hadj-Aissa, and Marco Pettini

Phys. Rev. E 106, 054134 (2022) - Published 14 November, 2022

Density matrix formulation of dynamical systems

Swetamber Das and Jason R. Green

Phys. Rev. E 106, 054135 (2022) - Published 14 November, 2022

Renormalization group study of marginal ferromagnetism

Andrea Cavagna, Antonio Culla, and Tomás S. Grigera

Phys. Rev. E 106, 054136 (2022) - Published 14 November, 2022

Entropy rate of random walks on complex networks under stochastic resetting

Yating Wang and Hanshuang Chen

Phys. Rev. E 106, 054137 (2022) - Published 14 November, 2022

Size-independent scaling analysis for explosive percolation

Kenta Hagiwara and Yukiyasu Ozeki

Phys. Rev. E 106, 054138 (2022) - Published 15 November, 2022

Reduced critical slowing down for statistical physics simulations

Kurt Langfeld, Pavel Buividovich, P. E. L. Rakow, and James Roscoe

Phys. Rev. E 106, 054139 (2022) - Published 16 November, 2022

Tricritical behavior in a neural model with excitatory and inhibitory units

Joaquin Almeira, Tomas S. Grigera, Dante R. Chialvo, and Sergio A. Cannas

Phys. Rev. E 106, 054140 (2022) - Published 16 November, 2022

Phase boundaries and the Widom line from the Ruppeiner geometry of fluids

Karlo de Leon and Ian Vega

Phys. Rev. E 106, 054141 (2022) - Published 17 November, 2022

Anatomy of an extreme event: What can we infer about the history of a heavy-tailed random walk?

Wesley W. Erickson and Daniel A. Steck

Phys. Rev. E 106, 054142 (2022) - Published 17 November, 2022

Dynamic phase transitions on the kagome Ising ferromagnet

Zeynep Demir Vatansever

Phys. Rev. E 106, 054143 (2022) - Published 18 November, 2022

Ground-state energy distribution of disordered many-body quantum systems

Wouter Buijsman, Talía L. M. Lezama, Tamar Leiser, and Lea F. Santos

Phys. Rev. E 106, 054144 (2022) - Published 18 November, 2022

Perturbative steady states of completely positive quantum master equations 

Jae Sung Lee and Joonhyun Yeo

Phys. Rev. E 106, 054145 (2022) - Published 21 November, 2022

Driven particle in a one-dimensional periodic potential with feedback control: Efficiency and power optimization

Kiran V. and Toby Joseph

Phys. Rev. E 106, 054146 (2022) - Published 21 November, 2022

Lévy walkers inside spherical shells with absorbing boundaries: Towards settling the optimal Lévy walk strategy for random searches

L. G. P. Caramês, Y. B. Matos, F. Bartumeus, C. G. Bezerra, T. Macrì, M. G. E. da Luz, E. P. Raposo, and G. M. Viswanathan

Phys. Rev. E 106, 054147 (2022) - Published 22 November, 2022

Typical perturbation theory: Conditions, accuracy, and comparison with a mesoscopic case

Mats H. Lamann and Jochen Gemmer

Phys. Rev. E 106, 054148 (2022) - Published 22 November, 2022

Ordering through learning in two-dimensional Ising spins

Pranay Bimal Sampat, Ananya Verma, Riya Gupta, and Shradha Mishra

Phys. Rev. E 106, 054149 (2022) - Published 22 November, 2022

Quantum mechanical interpretation of the minimum viscosity of metallic liquids

A. K. Gangopadhyay, Z. Nussinov, and K. F. Kelton

Phys. Rev. E 106, 054150 (2022) - Published 22 November, 2022

Stochastic paths controlling speed and dissipation

Rebecca A. Bone, Daniel J. Sharpe, David J. Wales, and Jason R. Green

Phys. Rev. E 106, 054151 (2022) - Published 23 November, 2022

Semi-Markov processes in open quantum systems: Connections and applications in counting statistics

Fei Liu

Phys. Rev. E 106, 054152 (2022) - Published 23 November, 2022

Molecular dynamics simulations of binary sphere mixtures

Joseph M. Monti and Gary S. Grest

Phys. Rev. E 106, 054153 (2022) - Published 23 November, 2022

Vortex motion and nonlinear response in coupled noisy phase oscillator lattices under shear stress

Hidetsugu Sakaguchi

Phys. Rev. E 106, 054154 (2022) - Published 28 November, 2022

Noisy voter model: Explicit expressions for finite system size

Florencia Perachia, P. Román, and Silvia A. Menchón

Phys. Rev. E 106, 054155 (2022) - Published 30 November, 2022

Memristive Ising circuits

Vincent J. Dowling and Yuriy V. Pershin

Phys. Rev. E 106, 054156 (2022) - Published 30 November, 2022

From generalized Langevin stochastic dynamics to anomalous diffusion

Rogelma M. S. Ferreira

Phys. Rev. E 106, 054157 (2022) - Published 30 November, 2022

Condensation induced by coupled transport processes

Gabriele Gotti, Stefano Iubini, and Paolo Politi

Phys. Rev. E 106, 054158 (2022) - Published 30 November, 2022

Nonlinear Dynamics and Chaos

Modulational instability in nonlinear saturable media with competing nonlocal nonlinearity

Conrad Bertrand Tabi, Hippolyte Tagwo, and Timoléon Crépin Kofané

Phys. Rev. E 106, 054201 (2022) - Published 4 November, 2022

Spherical wedge billiard: From chaos to fractals and Talbot carpets

Tomáš Tyc and Darek Cidlinský

Phys. Rev. E 106, 054202 (2022) - Published 7 November, 2022

Phenomenology of quantum eigenstates in mixed-type systems: Lemon billiards with complex phase space structure

Črt Lozej, Dragan Lukman, and Marko Robnik

Phys. Rev. E 106, 054203 (2022) - Published 7 November, 2022

Phase space analysis of nonlinear wave propagation in a bistable mechanical metamaterial with a defect

Mohammed A. Mohammed and Piyush Grover

Phys. Rev. E 106, 054204 (2022) - Published 8 November, 2022

Nonlinear beam tapering and two-dimensional ring solitons

V. K. Mezentsev, E. Podivilov, I. A. Vaseva, M. P. Fedoruk, A. M. Rubenchik, and S. K. Turitsyn

Phys. Rev. E 106, 054205 (2022) - Published 8 November, 2022

Domain walls in fractional media

Shatrughna Kumar, Pengfei Li, and Boris A. Malomed

Phys. Rev. E 106, 054207 (2022) - Published 9 November, 2022

Diverse coherence-resonance chimeras in coupled type-I excitable systems

Taniya Khatun, Biswabibek Bandyopadhyay, and Tanmoy Banerjee

Phys. Rev. E 106, 054208 (2022) - Published 10 November, 2022

Nonlinear Schrödinger equations with amplitude-dependent Wadati potentials

Dmitry A. Zezyulin

Phys. Rev. E 106, 054209 (2022) - Published 14 November, 2022

Effect of mobility on collective phase dynamics of nonlocally coupled oscillators with a phase lag

Bojun Li and Nariya Uchida

Phys. Rev. E 106, 054210 (2022) - Published 15 November, 2022

Pattern of inclusions inside rippled icicles

John Ladan and Stephen W. Morris

Phys. Rev. E 106, 054211 (2022) - Published 17 November, 2022

Some icicles develop surface ripples as they grow. Researchers now explain the growth mechanism, but a full explanation remains elusive.

Synchronization in the network-frustrated coupled oscillator with attractive-repulsive frequencies

Benmesbah Yasmine, Yongge Li, Wantao Jia, and Yong Xu

Phys. Rev. E 106, 054212 (2022) - Published 28 November, 2022

Vortex chaoticons in thermal nonlocal nonlinear media

Qing Wang, Milivoj R. Belić, Dumitru Mihalache, Liangwei Zeng, Lingling Zhang, and Ji Lin

Phys. Rev. E 106, 054214 (2022) - Published 30 November, 2022

Eigenfunction and eigenmode-spacing statistics in chaotic photonic crystal graphs

Shukai Ma, Thomas M. Antonsen, and Steven M. Anlage

Phys. Rev. E 106, 054215 (2022) - Published 30 November, 2022

How clock heterogeneity affects synchronization and can enhance stability

Nirmal Punetha and Lucas Wetzel

Phys. Rev. E 106, 054216 (2022) - Published 30 November, 2022

Networks and Complex Systems

Role extraction for digraphs via neighborhood pattern similarity

Giovanni Barbarino, Vanni Noferini, and Paul Van Dooren

Phys. Rev. E 106, 054301 (2022) - Published 1 November, 2022

Planted matching problems on random hypergraphs

Urte Adomaityte, Anshul Toshniwal, Gabriele Sicuro, and Lenka Zdeborová

Phys. Rev. E 106, 054302 (2022) - Published 7 November, 2022

Detecting hyperbolic geometry in networks: Why triangles are not enough

Riccardo Michielan, Nelly Litvak, and Clara Stegehuis

Phys. Rev. E 106, 054303 (2022) - Published 8 November, 2022

Mesoscopic architecture enhances communication across the macaque connectome revealing structure-function correspondence in the brain

Anand Pathak, Shakti N. Menon, and Sitabhra Sinha

Phys. Rev. E 106, 054304 (2022) - Published 9 November, 2022

Free-energy density functional for Strauss's model of transitive networks

Diego Escribano and José A. Cuesta

Phys. Rev. E 106, 054305 (2022) - Published 10 November, 2022

Statistical physics of the development of Kerner's synchronized-to-free-flow instability at a moving bottleneck in vehicular traffic

Vincent Wiering, Sergey L. Klenov, Boris S. Kerner, and Michael Schreckenberg

Phys. Rev. E 106, 054306 (2022) - Published 10 November, 2022

Local and global ordering dynamics in multistate voter models

Lucía Ramirez, Maxi San Miguel, and Tobias Galla

Phys. Rev. E 106, 054307 (2022) - Published 14 November, 2022

Entropy of labeled versus unlabeled networks

Jeremy Paton, Harrison Hartle, Huck Stepanyants, Pim van der Hoorn, and Dmitri Krioukov

Phys. Rev. E 106, 054308 (2022) - Published 17 November, 2022

Indirect transmission and disinfection strategies on heterogeneous networks

Su Zhong, Xiaoqun Wu, Yanting Li, and Congying Liu

Phys. Rev. E 106, 054309 (2022) - Published 23 November, 2022

Finite-size scaling of human-population distributions over fixed-size cells and its relation to fractal spatial structure

Álvaro Corral and Montserrat García del Muro

Phys. Rev. E 106, 054310 (2022) - Published 28 November, 2022

Nonequilibrium dynamics in a three-state opinion-formation model with stochastic extreme switches

Kathakali Biswas and Parongama Sen

Phys. Rev. E 106, 054311 (2022) - Published 28 November, 2022

Mean-field models of dynamics on networks via moment closure: An automated procedure

Bert Wuyts and Jan Sieber

Phys. Rev. E 106, 054312 (2022) - Published 28 November, 2022

Finite-size correlation behavior near a critical point: A simple metric for monitoring the state of a neural network

Eyisto J. Aguilar Trejo, Daniel A. Martin, Dulara De Zoysa, Zac Bowen, Tomas S. Grigera, Sergio A. Cannas, Wolfgang Losert, and Dante R. Chialvo

Phys. Rev. E 106, 054313 (2022) - Published 29 November, 2022

Feature-enriched core percolation in multiplex networks

Yilun Shang

Phys. Rev. E 106, 054314 (2022) - Published 29 November, 2022

Biological Physics

Prevalence of mutualism in a simple model of microbial coevolution

Luciano Stucchi, Javier Galeano, Juan Manuel Pastor, Jose María Iriondo, and José A. Cuesta

Phys. Rev. E 106, 054401 (2022) - Published 1 November, 2022

Vector-borne diseases with nonstationary vector populations: The case of growing and decaying populations

Àlex Giménez-Romero, Rosa Flaquer-Galmés, and Manuel A. Matías

Phys. Rev. E 106, 054402 (2022) - Published 1 November, 2022

Nonequilibrium dynamics of adaptation in sensory systems

Daniele Conti and Thierry Mora

Phys. Rev. E 106, 054404 (2022) - Published 9 November, 2022

Energetic convenience of cell division in biological tissues

Marco Picchi Scardaoni

Phys. Rev. E 106, 054405 (2022) - Published 14 November, 2022

Stochastic model of translocation of knotted proteins

Karol Capała and Piotr Szymczak

Phys. Rev. E 106, 054406 (2022) - Published 15 November, 2022

Effect of nonlocal grazing on dry-land vegetation dynamics

Mrinal Kanti Pal and Swarup Poria

Phys. Rev. E 106, 054407 (2022) - Published 15 November, 2022

Microtubule organization and cell geometry

Panayiotis Foteinopoulos and Bela M. Mulder

Phys. Rev. E 106, 054408 (2022) - Published 16 November, 2022

Emerging diversity in a population of evolving intransitive dice

Julius B. Kirkegaard and Kim Sneppen

Phys. Rev. E 106, 054409 (2022) - Published 17 November, 2022

Closed-form modeling of neuronal spike train statistics using multivariate Hawkes cumulants

Nicolas Privault and Michèle Thieullen

Phys. Rev. E 106, 054410 (2022) - Published 17 November, 2022

Optimality of intercellular signaling: Direct transport versus diffusion

Hyunjoong Kim, Yoichiro Mori, and Joshua B. Plotkin

Phys. Rev. E 106, 054411 (2022) - Published 21 November, 2022

Tipping points in spatial ecosystems driven by short-range correlated noise

Krishnendu Pal, Smita Deb, and Partha Sharathi Dutta

Phys. Rev. E 106, 054412 (2022) - Published 28 November, 2022

Picking winners in cell-cell collisions: Wetting, speed, and contact

Pedrom Zadeh and Brian A. Camley

Phys. Rev. E 106, 054413 (2022) - Published 30 November, 2022

Polymers

Conformation and dynamics of a tethered active polymer chain

Chao Wang, Yanli Zhou, Xiao Yang, Yingcai Chen, Yifan Shen, and Mengbo Luo

Phys. Rev. E 106, 054501 (2022) - Published 1 November, 2022

Topology-driven spatial organization of ring polymers under confinement

Debarshi Mitra, Shreerang Pande, and Apratim Chatterji

Phys. Rev. E 106, 054502 (2022) - Published 18 November, 2022

Colloids, Complex Fluids, and Active Matter

Evidence for growing structural correlation length in colloidal supercooled liquids

Jiankai Hu, Luhui Ning, Rui Liu, Mingcheng Yang, and Ke Chen

Phys. Rev. E 106, 054601 (2022) - Published 4 November, 2022

Nonequilibrium dynamical structure factor of a dilute suspension of active particles in a viscoelastic fluid

Juan Ruben Gomez-Solano, Rosalío F. Rodríguez, and Elizabeth Salinas-Rodríguez

Phys. Rev. E 106, 054602 (2022) - Published 4 November, 2022

Densest plane group packings of regular polygons

Miloslav Torda, John Y. Goulermas, Vitaliy Kurlin, and Graeme M. Day

Phys. Rev. E 106, 054603 (2022) - Published 7 November, 2022

Structure of saturated random-sequential-adsorption ellipse packings

Pedro Abritta and Robert S. Hoy

Phys. Rev. E 106, 054604 (2022) - Published 8 November, 2022

Sound attenuation in two-dimensional glasses at finite temperatures

Licun Fu and Lijin Wang

Phys. Rev. E 106, 054605 (2022) - Published 10 November, 2022

Brownian dynamics simulations of hard rods in external fields and with contact interactions

Alexander P. Antonov, Sören Schweers, Artem Ryabov, and Philipp Maass

Phys. Rev. E 106, 054606 (2022) - Published 10 November, 2022

Broken living layers: Dislocations in active smectic liquid crystals

Frank Jülicher, Jacques Prost, and John Toner

Phys. Rev. E 106, 054607 (2022) - Published 15 November, 2022

Flocking in one dimension: Asters and reversals

Brieuc Benvegnen, Hugues Chaté, Pavel L. Krapivsky, Julien Tailleur, and Alexandre Solon

Phys. Rev. E 106, 054608 (2022) - Published 16 November, 2022

Effect of boundaries on displacements and motion in two-dimensional fluid or elastic films and membranes

Tyler Lutz, Sonja K. Richter, and Andreas M. Menzel

Phys. Rev. E 106, 054609 (2022) - Published 16 November, 2022

Active nematic defects in compressible and incompressible flows

Supavit Pokawanvit, Zhitao Chen, Zhihong You, Luiza Angheluta, M. Cristina Marchetti, and Mark J. Bowick

Phys. Rev. E 106, 054610 (2022) - Published 16 November, 2022

Low-frequency vibrational states in ideal glasses with random pinning

Kumpei Shiraishi, Yusuke Hara, and Hideyuki Mizuno

Phys. Rev. E 106, 054611 (2022) - Published 17 November, 2022

Signal propagation and linear response in the delay Vicsek model

Daniel Geiß, Klaus Kroy, and Viktor Holubec

Phys. Rev. E 106, 054612 (2022) - Published 18 November, 2022

Near- and far-field hydrodynamic interaction of two chiral squirmers

Ruma Maity and P. S. Burada

Phys. Rev. E 106, 054613 (2022) - Published 22 November, 2022

Shape matters: Competing mechanisms of particle shape segregation

D. Hernández-Delfin, D. R. Tunuguntla, T. Weinhart, R. C. Hidalgo, and A. R. Thornton

Phys. Rev. E 106, 054614 (2022) - Published 28 November, 2022

Distance-as-time in physical aging

Ian M. Douglass and Jeppe C. Dyre

Phys. Rev. E 106, 054615 (2022) - Published 28 November, 2022

Rheology of periodically sheared suspensions undergoing reversible-irreversible transition

Zhouyang Ge and Gwynn J. Elfring

Phys. Rev. E 106, 054616 (2022) - Published 30 November, 2022

Harvesting information to control nonequilibrium states of active matter

Rémi Goerlich, Luís Barbosa Pires, Giovanni Manfredi, Paul-Antoine Hervieux, and Cyriaque Genet

Phys. Rev. E 106, 054617 (2022) - Published 30 November, 2022

Liquid Crystals

Self-growing nano-liquid-crystal film from dynamic swollen hydrogel substrates

Jize Sui

Phys. Rev. E 106, 054701 (2022) - Published 18 November, 2022

Comparative dielectric and thermally stimulated-depolarization-current studies of the liquid crystal dimers 1″,9″-bis(4-cyanobiphenyl-4′-yl) nonane and heptane and a binary mixture between them, close to the glass transition

Jordi Sellarès, José Antonio Diego, David O. López, Josep Salud, Beatriz Robles-Hernández, María Rosario de la Fuente, Juan Carlos Cañadas, Miguel Mudarra, Victor López de Rioja, Rafael Levit, and Sergio Diez-Berart

Phys. Rev. E 106, 054702 (2022) - Published 21 November, 2022

Electrically driven torsional distortions in twisted nematic films

Izabela S̀liwa, Pavel V. Maslennikov, and Alex V. Zakharov

Phys. Rev. E 106, 054703 (2022) - Published 23 November, 2022

Films and Interfaces

Structure of electrolyte solutions at nonuniformly charged surfaces on a variety of length scales

Markus Bier, Maximilian Mußotter, and S. Dietrich

Phys. Rev. E 106, 054801 (2022) - Published 7 November, 2022

Critical effects and scaling at meniscus osculation transitions

Andrew O. Parry, Martin Pospíšil, and Alexandr Malijevský

Phys. Rev. E 106, 054802 (2022) - Published 14 November, 2022

Theory of the oscillatory instability of a rigid tip scraped over a polymer surface

R. Mark Bradley and Patrick D. Shipman

Phys. Rev. E 106, 054803 (2022) - Published 17 November, 2022

Granular Materials

Gardner-like crossover from variable to persistent force contacts in granular crystals

Lars Kool, Patrick Charbonneau, and Karen E. Daniels

Phys. Rev. E 106, 054901 (2022) - Published 15 November, 2022

Onset and dynamics of avalanches in a rotating cylinder: From experimental data to a geometric model

Christopher P. McLaren, Bernhard J. Leistner, Sebastian Pinzello, Eduardo Cano-Pleite, and Christoph R. Müller

Phys. Rev. E 106, 054902 (2022) - Published 15 November, 2022

Bulk modulus along jamming transition lines of bidisperse granular packings

Juan C. Petit, Nishant Kumar, Stefan Luding, and Matthias Sperl

Phys. Rev. E 106, 054903 (2022) - Published 16 November, 2022

Penetrating a granular medium by successive impacts

Antoine Seguin, Yann Bertho, and Baptiste Darbois Texier

Phys. Rev. E 106, 054904 (2022) - Published 16 November, 2022

Solid Mechanics

Explicit kinematic equations for degree-4 rigid origami vertices, Euclidean and non-Euclidean

Riccardo Foschi, Thomas C. Hull, and Jason S. Ku

Phys. Rev. E 106, 055001 (2022) - Published 4 November, 2022

Controlling the configuration space topology of mechanical structures

M. Berry, David Limberg, M. E. Lee-Trimble, Ryan Hayward, and C. D. Santangelo

Phys. Rev. E 106, 055002 (2022) - Published 7 November, 2022

Linkages are mechanical assemblies of rods connected by rotating joints that are of both practical and theoretical interest. They can be designed to perform certain motions, and this work describes a method to do so more easily by focusing on perturbations around special configurations called branch points.

Rigidity transitions in zero-temperature polygons

M. C. Gandikota, Amanda Parker, and J. M. Schwarz

Phys. Rev. E 106, 055003 (2022) - Published 18 November, 2022

Universal mechanical instabilities in the energy landscape of amorphous solids: Evidence from athermal quasistatic expansion

Umang A. Dattani, Smarajit Karmakar, and Pinaki Chaudhuri

Phys. Rev. E 106, 055004 (2022) - Published 28 November, 2022

Fluid Dynamics

Instability of liquid film flow inside of a vertical tube in presence of an interfacial surfactant

Neha Jain, Gaurav Sharma, and Susmita Das

Phys. Rev. E 106, 055101 (2022) - Published 1 November, 2022

Theoretical model of the Leidenfrost temperature

Sergey Gavrilyuk and Henri Gouin

Phys. Rev. E 106, 055102 (2022) - Published 7 November, 2022

Giant vortex dynamics in confined bacterial turbulence

L. Puggioni, G. Boffetta, and S. Musacchio

Phys. Rev. E 106, 055103 (2022) - Published 9 November, 2022

Spontaneous separation and evaporation mechanism of self-rewetting fluid droplets on chemically stripe-patterned surfaces: A lattice Boltzmann study

Yue Yu, Zhuohui Yin, Qing Li, and Shi Tang

Phys. Rev. E 106, 055104 (2022) - Published 10 November, 2022

Circulating Marangoni flows within droplets in smectic films

E. S. Pikina, M. A. Shishkin, K. S. Kolegov, B. I. Ostrovskii, and S. A. Pikin

Phys. Rev. E 106, 055105 (2022) - Published 14 November, 2022

Stationary localized solutions in binary convection in slightly inclined rectangular cells

Arantxa Alonso, Oriol Batiste, and Isabel Mercader

Phys. Rev. E 106, 055106 (2022) - Published 16 November, 2022

Finite flame thickness effects on Kolmogorov-Petrovsky-Piskunov turbulent burning velocities

Sukruth Somappa, Vishal Acharya, and Tim Lieuwen

Phys. Rev. E 106, 055107 (2022) - Published 18 November, 2022

Cavity deformation and bubble entrapment during the impact of droplets on a liquid pool

Zhigang Xu, Tianyou Wang, and Zhizhao Che

Phys. Rev. E 106, 055108 (2022) - Published 23 November, 2022

Controlling fluid adhesion force with electric fields

Pedro H. A. Anjos, Francisco M. Rocha, and Eduardo O. Dias

Phys. Rev. E 106, 055109 (2022) - Published 28 November, 2022

Plasma Physics

Multiphase nonlinear electron plasma waves

Vadim R. Munirov, Lazar Friedland, and Jonathan S. Wurtele

Phys. Rev. E 106, 055201 (2022) - Published 3 November, 2022

Injection of electron beams into two laser wakefields and generation of electron rings

Q. Chen, Dominika Maslarova, J. Wang, S. Li, and D. Umstadter

Phys. Rev. E 106, 055202 (2022) - Published 4 November, 2022

High-current space-charge-limited pulses using ultrashort laser pulses

Channprit Kaur, Karumudi Rambabu, and Robert Fedosejevs

Phys. Rev. E 106, 055203 (2022) - Published 4 November, 2022

Hot-electron preheat and mitigation in polar-direct-drive experiments at the National Ignition Facility

A. A. Solodov, M. J. Rosenberg, M. Stoeckl, A. R. Christopherson, R. Betti, P. B. Radha, C. Stoeckl, M. Hohenberger, B. Bachmann, R. Epstein, R. K. Follett, W. Seka, J. F. Myatt, P. Michel, S. P. Regan, J. P. Palastro, D. H. Froula, E. M. Campbell, and V. N. Goncharov

Phys. Rev. E 106, 055204 (2022) - Published 4 November, 2022

Experimental evidence of early-time saturation of the ion-Weibel instability in counterstreaming plasmas of CH, Al, and Cu

M. J.-E. Manuel, M. B. P. Adams, S. Ghosh, F. N. Beg, S. Bolaños, C. M. Huntington, R. Jonnalagadda, D. Kawahito, B. B. Pollock, B. A. Remington, J. S. Ross, D. D. Ryutov, H. Sio, G. F. Swadling, P. Tzeferacos, and H.-S. Park

Phys. Rev. E 106, 055205 (2022) - Published 7 November, 2022

Nonlinear electrostatic ion cyclotron wave collapse and formation of wave packets in the presence of trapped electrons

Akash Biswas, Debkumar Chakraborty, and Samiran Ghosh

Phys. Rev. E 106, 055206 (2022) - Published 8 November, 2022

Detection of current-sheet and bipolar ion flows in a self-generated antiparallel magnetic field of laser-produced plasmas for magnetic reconnection research

T. Morita, T. Kojima, S. Matsuo, S. Matsukiyo, S. Isayama, R. Yamazaki, S. J. Tanaka, K. Aihara, Y. Sato, J. Shiota, Y. Pan, K. Tomita, T. Takezaki, Y. Kuramitsu, K. Sakai, S. Egashira, H. Ishihara, O. Kuramoto, Y. Matsumoto, K. Maeda, and Y. Sakawa

Phys. Rev. E 106, 055207 (2022) - Published 10 November, 2022

Diagnostics of highly charged plasmas with multicomponent 1+ ion injection

M. Luntinen, V. Toivanen, H. Koivisto, J. Angot, T. Thuillier, O. Tarvainen, and G. Castro

Phys. Rev. E 106, 055208 (2022) - Published 16 November, 2022

Minimum stabilizing energy release for mixing processes

E. J. Kolmes and N. J. Fisch

Phys. Rev. E 106, 055209 (2022) - Published 22 November, 2022

Ionization rate and plasma dynamics at 3.9 micron femtosecond photoionization of air

Adam Patel, Claudia Gollner, Rokas Jutas, Valentina Shumakova, Mikhail N. Shneider, Audrius Pugzlys, Andrius Baltuska, and Alexey Shashurin

Phys. Rev. E 106, 055210 (2022) - Published 23 November, 2022

Magnetization of high-density plasma with a jet velocity of hundreds of km/s

Tie-Huai Zhang, Wei-Min Wang, Yu-Tong Li, and Jie Zhang

Phys. Rev. E 106, 055211 (2022) - Published 28 November, 2022

Comparison of the static structure factor at long wavelengths for a dusty plasma liquid and other liquids

Vitaliy Zhuravlyov, J. Goree, Jack F. Douglas, Paolo Elvati, and Angela Violi

Phys. Rev. E 106, 055212 (2022) - Published 28 November, 2022

Generation of terahertz radiation under the effect of a femtosecond pulse on plasma in a magnetic field

K. N. Ovchinnikov and S. A. Uryupin

Phys. Rev. E 106, 055213 (2022) - Published 28 November, 2022

Predicting hot electron generation in inertial confinement fusion with particle-in-cell simulations

S. H. Cao, D. Patel, A. Lees, C. Stoeckl, M. J. Rosenberg, V. Gopalaswamy, H. Wen, H. Huang, A. Shvydky, R. Betti, and C. Ren

Phys. Rev. E 106, 055214 (2022) - Published 28 November, 2022

Improving the feasibility of economical proton-boron-11 fusion via alpha channeling with a hybrid fast and thermal proton scheme

Ian E. Ochs, Elijah J. Kolmes, Mikhail E. Mlodik, Tal Rubin, and Nathaniel J. Fisch

Phys. Rev. E 106, 055215 (2022) - Published 30 November, 2022

Computational Physics

End-to-end three-dimensional designing of complex disordered materials from limited data using machine learning

Serveh Kamrava and Hossein Mirzaee

Phys. Rev. E 106, 055301 (2022) - Published 1 November, 2022

Transparent boundary condition for simulating rogue wave solutions in the nonlinear Schrödinger equation

Chenxi Zheng and Shaoqiang Tang

Phys. Rev. E 106, 055302 (2022) - Published 7 November, 2022

Generalizability of reservoir computing for flux-driven two-dimensional convection

Florian Heyder, Juan Pedro Mellado, and Jörg Schumacher

Phys. Rev. E 106, 055303 (2022) - Published 9 November, 2022

Pore-network extraction using discrete Morse theory: Preserving the topology of the pore space

Andrey S. Zubov, Dmitry A. Murygin, and Kirill M. Gerke

Phys. Rev. E 106, 055304 (2022) - Published 9 November, 2022

Multiple-distribution-function lattice Boltzmann method for convection-diffusion-system-based incompressible Navier-Stokes equations

Zhenhua Chai, Baochang Shi, and Chengjie Zhan

Phys. Rev. E 106, 055305 (2022) - Published 9 November, 2022

Lifted directed-worm algorithm

Hidemaro Suwa

Phys. Rev. E 106, 055306 (2022) - Published 9 November, 2022

Essentially entropic lattice Boltzmann model: Theory and simulations

Mohammad Atif, Praveen Kumar Kolluru, and Santosh Ansumali

Phys. Rev. E 106, 055307 (2022) - Published 10 November, 2022

Thermal lattice Boltzmann model for liquid-vapor phase change

Lei Wang, Jiangxu Huang, and Kun He

Phys. Rev. E 106, 055308 (2022) - Published 10 November, 2022

Nonisothermal cellular automata simulation of two-dimensional snow crystal growth

X. Y. Xu and W. Wang

Phys. Rev. E 106, 055309 (2022) - Published 14 November, 2022

Hard-sphere jamming through the lens of linear optimization

Claudia Artiaco, Rafael Díaz Hernández Rojas, Giorgio Parisi, and Federico Ricci-Tersenghi

Phys. Rev. E 106, 055310 (2022) - Published 15 November, 2022

Simulating the jamming of hard spheres is difficult because of the singular interaction potential, which is either zero or infinite. This paper analyzes an algorithm that uses a mapping onto a constrained optimization problem to generate jammed hard-sphere packings that satisfy force balance and are globally stable.

Variational inference of fractional Brownian motion with linear computational complexity

Hippolyte Verdier, François Laurent, Alhassan Cassé, Christian L. Vestergaard, and Jean-Baptiste Masson

Phys. Rev. E 106, 055311 (2022) - Published 22 November, 2022

Invisible devices with natural materials designed by evolutionary optimization

Bei Wu, Shuwen Xue, Zhibin Zhang, and Huanyang Chen

Phys. Rev. E 106, 055312 (2022) - Published 23 November, 2022

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