Volume 102, Issue 6

December 2020

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Extreme first-passage times for random walks on networks

Sean D. Lawley

Phys. Rev. E 102, 062118 (2020) - Published 9 December, 2020

Have you wondered who started a rumor and how it reached you? What was the path that it took? In this work the author analyzes how rumors, or diseases, spread in a complex environment by computing analytically many properties of the fastest first passage time of searchers on a complex network.

EDITORS' SUGGESTION

Dynamics behind rough sounds in the song of the Pitangus sulphuratus

Juan F. Döppler, Ana Amador, Franz Goller, and Gabriel B. Mindlin

Phys. Rev. E 102, 062415 (2020) - Published 11 December, 2020

This article presents experimental and modeling work to characterize the vocalizations of the great kiskadee, a song bird found in the Americas. The model, together with measurements of muscle activity, air pressure, and sound, suggests mechanisms for sound amplitude modulation and other features of the characteristic song of the great kiskadee.

EDITORS' SUGGESTION

Effect of the charge distribution of virus coat proteins on the length of packaged RNAs

Yinan Dong, Siyu Li, and Roya Zandi

Phys. Rev. E 102, 062423 (2020) - Published 28 December, 2020

Certain viruses enclose their genetic material in a protein shell called the capsid, and it is known that electrostatic interactions are an important driving force in capsid formation. The authors use mean-field theory to show that not only the total charge, but also the charge distribution and configurational entropy play a significant role in this formation process, leading to an improved understanding of virus assembly.

EDITORS' SUGGESTION

Recovering Gardner restacking with purely diffusive operations

E. J. Kolmes and N. J. Fisch

Phys. Rev. E 102, 063209 (2020) - Published 21 December, 2020

When a plasma is unstable, how large is the energy release that can be triggered by the instability? In this paper, the authors show that two existing approaches to this question are equivalent, and provide a prescription for calculating the maximum energy that can be extracted.

RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Underdamped active Brownian heat engine

Viktor Holubec and Rahul Marathe

Phys. Rev. E 102, 060101(R) (2020) - Published 10 December, 2020

Nonlinear Dynamics and Chaos

RAPID COMMUNICATION

Lagrangian chaotic saddles and objective vortices in solar plasmas

Abraham C.-L. Chian, Suzana S. A. Silva, Erico L. Rempel, Luis R. Bellot Rubio, Milan Gošić, Kanya Kusano, and Sung-Hong Park

Phys. Rev. E 102, 060201(R) (2020) - Published 3 December, 2020

RAPID COMMUNICATION

Random matrix spectral form factor in kicked interacting fermionic chains

Dibyendu Roy and Tomaž Prosen

Phys. Rev. E 102, 060202(R) (2020) - Published 16 December, 2020

Biological Physics

RAPID COMMUNICATION

Regulation of membrane proteins through local heterogeneity in lipid bilayer thickness

Ahis Shrestha, Osman Kahraman, and Christoph A. Haselwandter

Phys. Rev. E 102, 060401(R) (2020) - Published 4 December, 2020

Colloids, Complex Fluids, and Active Matter

RAPID COMMUNICATION

Absence of the liquid-liquid phase transition in aqueous ionic liquids

Johannes Bachler, Lilli-Ruth Fidler, and Thomas Loerting

Phys. Rev. E 102, 060601(R) (2020) - Published 11 December, 2020

RAPID COMMUNICATION

Experimental observation of Faraday waves in soft gels

X. Shao, G. Bevilacqua, P. Ciarletta, J. R. Saylor, and J. B. Bostwick

Phys. Rev. E 102, 060602(R) (2020) - Published 23 December, 2020

Plasma Physics

RAPID COMMUNICATION

Relativistic slingshot: A source for single circularly polarized attosecond x-ray pulses

Jingwei Wang, Sergei V. Bulanov, Min Chen, Bifeng Lei, Yuxue Zhang, Rishat Zagidullin, Veronika Zorina, Wei Yu, Yuxin Leng, Ruxin Li, Matt Zepf, and Sergey G. Rykovanov

Phys. Rev. E 102, 061201(R) (2020) - Published 15 December, 2020

ARTICLES

Statistical Physics

Phase behavior of Lennard-Jones particles in two dimensions

Yan-Wei Li and Massimo Pica Ciamarra

Phys. Rev. E 102, 062101 (2020) - Published 1 December, 2020

Susceptibility of quasiclassical Brownian motion in harmonic nonlinear potentials

Pedro J. Colmenares

Phys. Rev. E 102, 062102 (2020) - Published 1 December, 2020

Fokker-Planck equation for Coulomb relaxation and wave-particle diffusion: Spectral solution and the stability of the Kappa distribution to Coulomb collisions

Wucheng Zhang and Bernie D. Shizgal

Phys. Rev. E 102, 062103 (2020) - Published 2 December, 2020

Buckling transitions and soft-phase invasion of two-component icosahedral shells

Marc D. Emanuel, Andrey G. Cherstvy, Ralf Metzler, and Gerhard Gompper

Phys. Rev. E 102, 062104 (2020) - Published 2 December, 2020

Deformed Fokker-Planck equation: Inhomogeneous medium with a position-dependent mass

Bruno G. da Costa, Ignacio S. Gomez, and Ernesto P. Borges

Phys. Rev. E 102, 062105 (2020) - Published 2 December, 2020

Heterogeneous diffusion processes and nonergodicity with Gaussian colored noise in layered diffusivity landscapes

Yong Xu, Xuemei Liu, Yongge Li, and Ralf Metzler

Phys. Rev. E 102, 062106 (2020) - Published 2 December, 2020

Exact solution of the Floquet-PXP cellular automaton

Joseph W. P. Wilkinson, Katja Klobas, Tomaž Prosen, and Juan P. Garrahan

Phys. Rev. E 102, 062107 (2020) - Published 3 December, 2020

Large deviations in one-dimensional random sequential adsorption

P. L. Krapivsky

Phys. Rev. E 102, 062108 (2020) - Published 3 December, 2020

Capture of a diffusive prey by multiple predators in confined space

Indrani Nayak, Amitabha Nandi, and Dibyendu Das

Phys. Rev. E 102, 062109 (2020) - Published 4 December, 2020

Thermal origin of quasilocalized excitations in glasses

Wencheng Ji, Tom W. J. de Geus, Marko Popović, Elisabeth Agoritsas, and Matthieu Wyart

Phys. Rev. E 102, 062110 (2020) - Published 4 December, 2020

Hard core run and tumble particles on a one-dimensional lattice

Rahul Dandekar, Subhadip Chakraborti, and R. Rajesh

Phys. Rev. E 102, 062111 (2020) - Published 4 December, 2020

Toward a density-functional theory for the Jagla fluid

Florian Gußmann, S. Dietrich, and Roland Roth

Phys. Rev. E 102, 062112 (2020) - Published 7 December, 2020

Eigenstate thermalization for observables that break Hamiltonian symmetries and its counterpart in interacting integrable systems

Tyler LeBlond and Marcos Rigol

Phys. Rev. E 102, 062113 (2020) - Published 7 December, 2020

Distributions of bubble lifetimes and bubble lengths in DNA

M. Hillebrand, G. Kalosakas, Ch. Skokos, and A. R. Bishop

Phys. Rev. E 102, 062114 (2020) - Published 8 December, 2020

Anomalous persistence exponents for normal yet aging diffusion

A. Barbier–Chebbah, O. Benichou, and R. Voituriez

Phys. Rev. E 102, 062115 (2020) - Published 8 December, 2020

Ground state and thermodynamic properties of spin-1/2 isosceles Heisenberg triangles for $V_{6}$ -like magnetic molecules

J. Torrico and J. A. Plascak

Phys. Rev. E 102, 062116 (2020) - Published 8 December, 2020

Generalization of the Marčenko-Pastur problem

Jean-Philippe Bouchaud and Marc Potters

Phys. Rev. E 102, 062117 (2020) - Published 8 December, 2020

EDITORS' SUGGESTION

Extreme first-passage times for random walks on networks

Sean D. Lawley

Phys. Rev. E 102, 062118 (2020) - Published 9 December, 2020

Kinetics of domain growth and aging in a two-dimensional off-lattice system

Jiarul Midya and Subir K. Das

Phys. Rev. E 102, 062119 (2020) - Published 9 December, 2020

Stability, isolated chaos, and superdiffusion in nonequilibrium many-body interacting systems

Atanu Rajak and Itzhack Dana

Phys. Rev. E 102, 062120 (2020) - Published 9 December, 2020

Tighter thermodynamic bound on the speed limit in systems with unidirectional transitions

Deepak Gupta and Daniel M. Busiello

Phys. Rev. E 102, 062121 (2020) - Published 10 December, 2020

Correlated continuous-time random walk in a velocity field: Anomalous bifractional crossover

Jian Liu, Jing-Dong Bao, and Xiaosong Chen

Phys. Rev. E 102, 062122 (2020) - Published 10 December, 2020

Performance bounds of nonadiabatic quantum harmonic Otto engine and refrigerator under a squeezed thermal reservoir

Varinder Singh and Özgür E. Müstecaplıoğlu

Phys. Rev. E 102, 062123 (2020) - Published 10 December, 2020

Closed-form solutions to the dynamics of confined biased lattice random walks in arbitrary dimensions

Seeralan Sarvaharman and Luca Giuggioli

Phys. Rev. E 102, 062124 (2020) - Published 10 December, 2020

Out-of-equilibrium Monte Carlo simulations of a classical gas with Bose-Einstein statistics

M. Di Pietro Martínez, M. Giuliano, and M. Hoyuelos

Phys. Rev. E 102, 062125 (2020) - Published 11 December, 2020

Self-averaging in many-body quantum systems out of equilibrium: Time dependence of distributions

E. Jonathan Torres-Herrera, Isaías Vallejo-Fabila, Andrei J. Martínez-Mendoza, and Lea F. Santos

Phys. Rev. E 102, 062126 (2020) - Published 11 December, 2020

Infima statistics of entropy production in an underdamped Brownian motor

Ke Cheng, Jia-Qi Dong, Wen-Hui Han, Fei Liu, and Liang Huang

Phys. Rev. E 102, 062127 (2020) - Published 14 December, 2020

Exact variance of von Neumann entanglement entropy over the Bures-Hall measure

Lu Wei

Phys. Rev. E 102, 062128 (2020) - Published 14 December, 2020

First-passage probabilities and mean number of sites visited by a persistent random walker in one- and two-dimensional lattices

Hernán Larralde

Phys. Rev. E 102, 062129 (2020) - Published 14 December, 2020

Quantum Brownian motion: Drude and Ohmic baths as continuum limits of the Rubin model

Avijit Das, Abhishek Dhar, Ion Santra, Urbashi Satpathi, and Supurna Sinha

Phys. Rev. E 102, 062130 (2020) - Published 14 December, 2020

Model of magnetic friction with infinite-range interaction

Hisato Komatsu

Phys. Rev. E 102, 062131 (2020) - Published 15 December, 2020

Unified approach to classical speed limit and thermodynamic uncertainty relation

Van Tuan Vo, Tan Van Vu, and Yoshihiko Hasegawa

Phys. Rev. E 102, 062132 (2020) - Published 15 December, 2020

Charging a quantum battery via nonequilibrium heat current

Francesco Tacchino, Tiago F. F. Santos, Dario Gerace, Michele Campisi, and Marcelo F. Santos

Phys. Rev. E 102, 062133 (2020) - Published 16 December, 2020

Efficient choice of colored noise in the stochastic dynamics of open quantum systems

D. Matos, M. A. Lane, I. J. Ford, and L. Kantorovich

Phys. Rev. E 102, 062134 (2020) - Published 16 December, 2020

Complete density calculations of $q$ -state Potts and clock models: Reentrance of interface densities under symmetry breaking

E. Can Artun and A. Nihat Berker

Phys. Rev. E 102, 062135 (2020) - Published 16 December, 2020

Classical density-functional theory applied to the solid state

James F. Lutsko and Cédric Schoonen

Phys. Rev. E 102, 062136 (2020) - Published 17 December, 2020

Explicitly stable fundamental-measure-theory models for classical density functional theory

James F. Lutsko

Phys. Rev. E 102, 062137 (2020) - Published 17 December, 2020

Ising universality in the two-dimensional Blume-Capel model with quenched random crystal field

Erol Vatansever, Zeynep Demir Vatansever, Panagiotis E. Theodorakis, and Nikolaos G. Fytas

Phys. Rev. E 102, 062138 (2020) - Published 22 December, 2020

Transfer entropies within dynamical effects framework

Dmitry A. Smirnov

Phys. Rev. E 102, 062139 (2020) - Published 23 December, 2020

Virial–potential-energy correlation and its relation to density scaling for quasireal model systems

K. Koperwas, A. Grzybowski, and M. Paluch

Phys. Rev. E 102, 062140 (2020) - Published 23 December, 2020

Large deviations of a random walk model with emerging territories

Hendrik Schawe and Alexander K. Hartmann

Phys. Rev. E 102, 062141 (2020) - Published 23 December, 2020

Renormalization of stochastic differential equations with multiplicative noise using effective potential methods

Jean-Sébastien Gagnon, David Hochberg, and Juan Pérez-Mercader

Phys. Rev. E 102, 062142 (2020) - Published 23 December, 2020

Emergence of power law distributions for odd and even lifetimes

Silvia A. Menchón and P. Román

Phys. Rev. E 102, 062143 (2020) - Published 24 December, 2020

Quantum chaos challenges many-body localization

Jan Šuntajs, Janez Bonča, Tomaž Prosen, and Lev Vidmar

Phys. Rev. E 102, 062144 (2020) - Published 24 December, 2020

Predictive Maxwell's demons

Nathaniel Rupprecht and Dervis Can Vural

Phys. Rev. E 102, 062145 (2020) - Published 28 December, 2020

Heat rectification on the $X X$ chain

Saulo H. S. Silva, Gabriel T. Landi, Raphael C. Drumond, and Emmanuel Pereira

Phys. Rev. E 102, 062146 (2020) - Published 28 December, 2020

Field theory of reaction-diffusion: Law of mass action with an energetic variational approach

Yiwei Wang, Chun Liu, Pei Liu, and Bob Eisenberg

Phys. Rev. E 102, 062147 (2020) - Published 28 December, 2020

Equilibration of sinusoidal modulation of temperature in linear and nonlinear chains

Elena A. Korznikova, Vitaly A. Kuzkin, Anton M. Krivtsov, Daxing Xiong, Vakhid A. Gani, Aleksey A. Kudreyko, and Sergey V. Dmitriev

Phys. Rev. E 102, 062148 (2020) - Published 29 December, 2020

Coarse graining of biochemical systems described by discrete stochastic dynamics

David Seiferth, Peter Sollich, and Stefan Klumpp

Phys. Rev. E 102, 062149 (2020) - Published 29 December, 2020

Critical dynamics of the nonconserved strongly anisotropic permutation symmetric three-vector model

Rajiv G. Pereira

Phys. Rev. E 102, 062150 (2020) - Published 29 December, 2020

Higher-charge three-dimensional compact lattice Abelian-Higgs models

Claudio Bonati, Andrea Pelissetto, and Ettore Vicari

Phys. Rev. E 102, 062151 (2020) - Published 30 December, 2020

Unraveling the role of coherence in the first law of quantum thermodynamics

Bertúlio de Lima Bernardo

Phys. Rev. E 102, 062152 (2020) - Published 30 December, 2020

Visualizing free-energy landscapes for four hard disks

Eric R. Weeks and Keely Criddle

Phys. Rev. E 102, 062153 (2020) - Published 31 December, 2020

Dimensional reduction breakdown and correction to scaling in the random-field Ising model

Ivan Balog, Gilles Tarjus, and Matthieu Tissier

Phys. Rev. E 102, 062154 (2020) - Published 31 December, 2020

Constraint relaxation leads to jamming

Eial Teomy and Yair Shokef

Phys. Rev. E 102, 062155 (2020) - Published 31 December, 2020

Nonlinear Dynamics and Chaos

Explicit Granger causality in kernel Hilbert spaces

Diego Bueso, Maria Piles, and Gustau Camps-Valls

Phys. Rev. E 102, 062201 (2020) - Published 2 December, 2020

Role of the internal degree of freedom of particles in cluster formation

Masatomo Iwasa

Phys. Rev. E 102, 062202 (2020) - Published 7 December, 2020

Phase space structure and escape time dynamics in a Van der Waals model for exothermic reactions

Francisco Gonzalez Montoya and Stephen Wiggins

Phys. Rev. E 102, 062203 (2020) - Published 7 December, 2020

Thermal decay rates of an activated complex in a driven model chemical reaction

Robin Bardakcioglu, Johannes Reiff, Matthias Feldmaier, Jörg Main, and Rigoberto Hernandez

Phys. Rev. E 102, 062204 (2020) - Published 8 December, 2020

Quantum manifestations of homogeneous and inhomogeneous oscillation suppression states

Biswabibek Bandyopadhyay, Taniya Khatun, Debabrata Biswas, and Tanmoy Banerjee

Phys. Rev. E 102, 062205 (2020) - Published 10 December, 2020

Crossover of dynamical instability and chaos in the supercritical state

C. Cockrell

Phys. Rev. E 102, 062206 (2020) - Published 11 December, 2020

Fermi-Pasta-Ulam-Tsingou recurrence of periodic anomalous waves in the complex Ginzburg-Landau and in the Lugiato-Lefever equations

F. Coppini and P. M. Santini

Phys. Rev. E 102, 062207 (2020) - Published 14 December, 2020

Layered localization in a chaotic optical cavity

Yu-Zhong Gu, Li-Kun Chen, Yan-Jun Qian, Qihuang Gong, Qi-Tao Cao, and Yun-Feng Xiao

Phys. Rev. E 102, 062208 (2020) - Published 14 December, 2020

Reduction of the synchronization time in random logistic maps

Kaito Sano, Takahito Mitsui, and Takuma Akimoto

Phys. Rev. E 102, 062209 (2020) - Published 14 December, 2020

Integrability of one-dimensional Lindbladians from operator-space fragmentation

Fabian H. L. Essler and Lorenzo Piroli

Phys. Rev. E 102, 062210 (2020) - Published 14 December, 2020

Deadlocks in the synchronization of pulse-coupled oscillators on star graphs

Arke Vogell, Udo Schilcher, and Christian Bettstetter

Phys. Rev. E 102, 062211 (2020) - Published 14 December, 2020

Critical exponents in coupled phase-oscillator models on small-world networks

Ryosuke Yoneda, Kenji Harada, and Yoshiyuki Y. Yamaguchi

Phys. Rev. E 102, 062212 (2020) - Published 14 December, 2020

Bending and pinching of three-phase stripes: From secondary instabilities to morphological deformations in organic photovoltaics

Alon Z. Shapira, Nir Gavish, Hannes Uecker, and Arik Yochelis

Phys. Rev. E 102, 062213 (2020) - Published 15 December, 2020

Kink-antikink collisions in a weakly interacting $ϕ^{4}$ model

C. Adam, K. Oles, T. Romanczukiewicz, and A. Wereszczynski

Phys. Rev. E 102, 062214 (2020) - Published 17 December, 2020

Turing instability in the reaction-diffusion network

Qianqian Zheng, Jianwei Shen, and Yong Xu

Phys. Rev. E 102, 062215 (2020) - Published 17 December, 2020

Koopman analysis in oscillator synchronization

Jing Hu and Yueheng Lan

Phys. Rev. E 102, 062216 (2020) - Published 29 December, 2020

Variational approximation for two-dimensional quantum droplets

Sherzod R. Otajonov, Eduard N. Tsoy, and Fatkhulla Kh. Abdullaev

Phys. Rev. E 102, 062217 (2020) - Published 30 December, 2020

Networks and Complex Systems

Navigating differential structures in complex networks

Leonardo L. Portes and Michael Small

Phys. Rev. E 102, 062301 (2020) - Published 7 December, 2020

Dodge and survive: Modeling the predatory nature of dodgeball

Perrin E. Ruth and Juan G. Restrepo

Phys. Rev. E 102, 062302 (2020) - Published 7 December, 2020

Evoked response activity eigenmode analysis in a convoluted cortex via neural field theory

K. N. Mukta, P. A. Robinson, J. C. Pagès, N. C. Gabay, and Xiao Gao

Phys. Rev. E 102, 062303 (2020) - Published 8 December, 2020

Resource dependency and survivability in complex networks

Madhusudan Ingale and Snehal M. Shekatkar

Phys. Rev. E 102, 062304 (2020) - Published 8 December, 2020

Spacing ratio characterization of the spectra of directed random networks

Thomas Peron, Bruno Messias F. de Resende, Francisco A. Rodrigues, Luciano da F. Costa, and J. A. Méndez-Bermúdez

Phys. Rev. E 102, 062305 (2020) - Published 10 December, 2020

Network structure-based interventions on spatial spread of epidemics in metapopulation networks

Bing Wang, Min Gou, YiKe Guo, Gouhei Tanaka, and Yuexing Han

Phys. Rev. E 102, 062306 (2020) - Published 14 December, 2020

Inference of edge correlations in multilayer networks

A. Roxana Pamfil, Sam D. Howison, and Mason A. Porter

Phys. Rev. E 102, 062307 (2020) - Published 16 December, 2020

Ring structure of selected two-dimensional procrystalline lattices

David Ormrod Morley, Andrew L. Goodwin, and Mark Wilson

Phys. Rev. E 102, 062308 (2020) - Published 18 December, 2020

Random walks in time-varying networks with memory

Bing Wang, Hongjuan Zeng, and Yuexing Han

Phys. Rev. E 102, 062309 (2020) - Published 23 December, 2020

Network constraints on the mixing patterns of binary node metadata

Matteo Cinelli, Leto Peel, Antonio Iovanella, and Jean-Charles Delvenne

Phys. Rev. E 102, 062310 (2020) - Published 23 December, 2020

Non-Markovian majority-vote model

Hanshuang Chen, Shuang Wang, Chuansheng Shen, Haifeng Zhang, and Ginestra Bianconi

Phys. Rev. E 102, 062311 (2020) - Published 29 December, 2020

Connectivity in one-dimensional soft random geometric graphs

Michael Wilsher, Carl P. Dettmann, and Ayalvadi Ganesh

Phys. Rev. E 102, 062312 (2020) - Published 29 December, 2020

Biological Physics

Complex interplay between spectral harmonicity and different types of cross-frequency couplings in nonlinear oscillators and biologically plausible neural network models

Damián Dellavale, Osvaldo Matías Velarde, Germán Mato, and Eugenio Urdapilleta

Phys. Rev. E 102, 062401 (2020) - Published 1 December, 2020

Base pair opening in a damped helicoidal Joyeux-Buyukdagli model of DNA in an external force field

J. B. Okaly, A. Mvogo, C. B. Tabi, H. P. Ekobena Fouda, and T. C. Kofané

Phys. Rev. E 102, 062402 (2020) - Published 1 December, 2020

Adiabatic invariants drive rhythmic human motion in variable gravity

N. Boulanger, F. Buisseret, V. Dehouck, F. Dierick, and O. White

Phys. Rev. E 102, 062403 (2020) - Published 1 December, 2020

Time cells might be optimized for predictive capacity, not redundancy reduction or memory capacity

Alexander Hsu and Sarah E. Marzen

Phys. Rev. E 102, 062404 (2020) - Published 2 December, 2020

Stability of ecosystems enhanced by species-interaction constraints

Susanne Pettersson, Van M. Savage, and Martin Nilsson Jacobi

Phys. Rev. E 102, 062405 (2020) - Published 3 December, 2020

Dynamics of undulatory fluctuations of semiflexible filaments in a network

Jonathan Kernes and Alex J. Levine

Phys. Rev. E 102, 062406 (2020) - Published 3 December, 2020

Enhanced lift and thrust via the translational motion between the thorax-abdomen node and the center of mass of a butterfly with a constructive abdominal oscillation

Sheng-Kai Chang, Yu-Hsiang Lai, You-Jun Lin, and Jing-Tang Yang

Phys. Rev. E 102, 062407 (2020) - Published 3 December, 2020

Mechanism underlying dynamic scaling properties observed in the contour of spreading epithelial monolayer

Toshiki Oguma, Hisako Takigawa-Imamura, and Takashi Miura

Phys. Rev. E 102, 062408 (2020) - Published 4 December, 2020

Aligning biological sequences by exploiting residue conservation and coevolution

Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, and Francesco Zamponi

Phys. Rev. E 102, 062409 (2020) - Published 7 December, 2020

Taming the diffusion approximation through a controlling-factor WKB method

Jayant Pande and Nadav M. Shnerb

Phys. Rev. E 102, 062410 (2020) - Published 9 December, 2020

Noisy signal propagation and amplification in phenotypic transition cascade of colonic cells

Xue-fen Hou, Bin-qian Zhou, Yi-fan Zhou, Charles Omotomide Apata, Long Jiang, and Qi-ming Pei

Phys. Rev. E 102, 062411 (2020) - Published 9 December, 2020

Quenching to fix metastable states in models of prebiotic chemistry

Qianyi Sheng, Ben Intoy, and J. W. Halley

Phys. Rev. E 102, 062412 (2020) - Published 10 December, 2020

Modification of lipid membrane compressibility induced by an electric field

K. R. Prathyusha, Ignacio Pagonabarraga, and P. B. Sunil Kumar

Phys. Rev. E 102, 062413 (2020) - Published 10 December, 2020

Solitary waves dynamic for Davydov $α$ -helical protein model: Effects of localized and periodic inhomogeneities

R. Y. Ondoua and D. Belobo Belobo

Phys. Rev. E 102, 062414 (2020) - Published 11 December, 2020

EDITORS' SUGGESTION

Dynamics behind rough sounds in the song of the Pitangus sulphuratus

Juan F. Döppler, Ana Amador, Franz Goller, and Gabriel B. Mindlin

Phys. Rev. E 102, 062415 (2020) - Published 11 December, 2020

Discovery of oscillations in rotational speed of body-tethered Caulobacter crescentus

Jordan Bell, George Araujo, and Jay X. Tang

Phys. Rev. E 102, 062416 (2020) - Published 14 December, 2020

Evaluating snail-trail frameworks for leader-follower behavior with agent-based modeling

W. Duncan Martinson, Helen M. Byrne, and Philip K. Maini

Phys. Rev. E 102, 062417 (2020) - Published 14 December, 2020

Stopping power of water for carbon ions with energies in the Bragg peak region

W. Y. Baek, T. Braunroth, L. de La Fuente Rosales, J. M. Rahm, and H. Rabus

Phys. Rev. E 102, 062418 (2020) - Published 18 December, 2020

Stochastic evolutionary dynamics of trust games with asymmetric parameters

Ik Soo Lim

Phys. Rev. E 102, 062419 (2020) - Published 22 December, 2020

Insights from graph theory on the morphologies of actomyosin networks with multilinkers

Yossi Eliaz, Francois Nedelec, Greg Morrison, Herbert Levine, and Margaret S. Cheung

Phys. Rev. E 102, 062420 (2020) - Published 23 December, 2020

Modeling action potential reversals in tunicate hearts

John W. Cain, Luran He, and Lindsay Waldrop

Phys. Rev. E 102, 062421 (2020) - Published 23 December, 2020

Roles of four feedback loops in mitochondrial permeability transition pore opening induced by ${Ca}^{2 +}$ and reactive oxygen species

Hong Qi, Guoping Xu, Xiao-Long Peng, Xiang Li, Jianwei Shuai, and Rui Xu

Phys. Rev. E 102, 062422 (2020) - Published 23 December, 2020

EDITORS' SUGGESTION

Effect of the charge distribution of virus coat proteins on the length of packaged RNAs

Yinan Dong, Siyu Li, and Roya Zandi

Phys. Rev. E 102, 062423 (2020) - Published 28 December, 2020

Origin of subdiffusions in proteins: Insight from peptide systems

Chenliang Xia, Xuefeng He, Jun Wang, and Wei Wang

Phys. Rev. E 102, 062424 (2020) - Published 28 December, 2020

Tumor ablation due to inhomogeneous anisotropic diffusion in generic three-dimensional topologies

Erdi Kara, Aminur Rahman, Eugenio Aulisa, and Souparno Ghosh

Phys. Rev. E 102, 062425 (2020) - Published 30 December, 2020

Polymers

Necking of double-network gels: Constitutive modeling with microstructural insight

Vahid Morovati, Mohammad Ali Saadat, and Roozbeh Dargazany

Phys. Rev. E 102, 062501 (2020) - Published 7 December, 2020

Anisotropic mechanical response of layered disordered fibrous materials

M. R. Houghton, M. A. Walkley, and D. A. Head

Phys. Rev. E 102, 062502 (2020) - Published 24 December, 2020

Colloids, Complex Fluids, and Active Matter

Probing the adsorption of nonionic micelles on different-sized nanoparticles by scattering techniques

Himanshi Singh, Debes Ray, Sugam Kumar, Shin-ichi Takata, Vinod K. Aswal, and Hideki Seto

Phys. Rev. E 102, 062601 (2020) - Published 1 December, 2020

Lattice model for active flows in microchannels

Alessandro Ravoni and Luca Angelani

Phys. Rev. E 102, 062602 (2020) - Published 1 December, 2020

Three-step melting of hard superdisks in two dimensions

Péter Gurin, Szabolcs Varga, and Gerardo Odriozola

Phys. Rev. E 102, 062603 (2020) - Published 3 December, 2020

Active Brownian and inertial particles in disordered environments: Short-time expansion of the mean-square displacement

Davide Breoni, Michael Schmiedeberg, and Hartmut Löwen

Phys. Rev. E 102, 062604 (2020) - Published 7 December, 2020

Connecting relaxation time to a dynamical length scale in athermal active glass formers

Dipanwita Ghoshal and Ashwin Joy

Phys. Rev. E 102, 062605 (2020) - Published 7 December, 2020

Nonmonotonic swelling and compression dynamics of hydrogels in polymer solutions

Frank J. Aangenendt, Melle T. J. J. M. Punter, Bela M. Mulder, Paul van der Schoot, and Hans M. Wyss

Phys. Rev. E 102, 062606 (2020) - Published 9 December, 2020

Compression and swelling of hydrogels in polymer solutions: A dominant-mode model

Melle T. J. J. M. Punter, Hans M. Wyss, and Bela M. Mulder

Phys. Rev. E 102, 062607 (2020) - Published 9 December, 2020

Height distribution and orientation of colloidal dumbbells near a wall

Ruben W. Verweij, Stefania Ketzetzi, Joost de Graaf, and Daniela J. Kraft

Phys. Rev. E 102, 062608 (2020) - Published 22 December, 2020

Equivalence between condensation and boiling in a Lennard-Jones fluid

I. Sanchez-Burgos, P. Montero de Hijes, P. Rosales-Pelaez, C. Vega, and E. Sanz

Phys. Rev. E 102, 062609 (2020) - Published 28 December, 2020

Diffusing wave microrheology of strongly attractive dense emulsions

Yixuan Xu, Frank Scheffold, and Thomas G. Mason

Phys. Rev. E 102, 062610 (2020) - Published 29 December, 2020

Liquid Crystals

General liquid-crystal theory for anisotropically shaped molecules: Symmetry, orientational order parameters, and system free energy

Jie Xu and Jeff Z. Y. Chen

Phys. Rev. E 102, 062701 (2020) - Published 9 December, 2020

Observation of stochastic resonance in a liquid-crystal light valve with optical feedback induced by colored noise in the driving voltage

Yoshitomo Goto, Atsuya Shishibe, Hiroshi Orihara, Stefania Residori, and Tomoyuki Nagaya

Phys. Rev. E 102, 062702 (2020) - Published 14 December, 2020

Transient flow-driven distortion of a nematic liquid crystal in channel flow with dissipative weak planar anchoring

J. R. L. Cousins, S. K. Wilson, N. J. Mottram, D. Wilkes, and L. Weegels

Phys. Rev. E 102, 062703 (2020) - Published 18 December, 2020

Generalized van der Waals theory for phase behavior of two-dimensional nematic liquid crystals. II. Phase coexistence and adsorption

Ezequiel Rodolfo Soulé

Phys. Rev. E 102, 062704 (2020) - Published 21 December, 2020

Dynamics of defects around anisotropic particles in nematic liquid crystals under shear

Humberto Híjar

Phys. Rev. E 102, 062705 (2020) - Published 28 December, 2020

Films and Interfaces

Weak scaling of the contact distance between two fluctuating interfaces with system size

Clemens Moritz, Marcello Sega, Max Innerbichler, Phillip L. Geissler, and Christoph Dellago

Phys. Rev. E 102, 062801 (2020) - Published 2 December, 2020

Traveling waves of the solidification and melting of cubic crystal lattices

V. Ankudinov, K. R. Elder, and P. K. Galenko

Phys. Rev. E 102, 062802 (2020) - Published 3 December, 2020

Static interface profiles for contact lines on an elastic membrane with the Willmore energy

Zhen Zhang, Jin Yao, and Weiqing Ren

Phys. Rev. E 102, 062803 (2020) - Published 9 December, 2020

Granular Materials

Heaps of sand in flows within a split-bottom Couette cell

Miguel Cabrera and Oscar Polanía

Phys. Rev. E 102, 062901 (2020) - Published 7 December, 2020

Link between packing morphology and the distribution of contact forces and stresses in packings of highly nonconvex particles

N. A. Conzelmann, A. Penn, M. N. Partl, F. J. Clemens, L. D. Poulikakos, and C. R. Müller

Phys. Rev. E 102, 062902 (2020) - Published 21 December, 2020

Solid Mechanics

Dynamic stiction without static friction: The role of friction vector rotation

Ken Nakano and Valentin L. Popov

Phys. Rev. E 102, 063001 (2020) - Published 10 December, 2020

Fluid Dynamics

Impact of electric charge and motion of water drops on the inception field strength of partial discharges

Jens-Michael Löwe, Volker Hinrichsen, Ilia V. Roisman, and Cameron Tropea

Phys. Rev. E 102, 063101 (2020) - Published 8 December, 2020

Control of viscous fingering through variable injection rates and time-dependent viscosity fluids: Beyond the linear regime

Írio M. Coutinho and José A. Miranda

Phys. Rev. E 102, 063102 (2020) - Published 9 December, 2020

Advective-acoustic cycle in a shallow water standing accretion shock experiment

S. Sebold, F. Günzkofer, R. Arredondo, T. Höschen, U. von Toussaint, U. Stroth, and P. Manz

Phys. Rev. E 102, 063103 (2020) - Published 10 December, 2020

Multiscale simulations of charge and size separation of nanoparticles with a solid-state nanoporous membrane

Valerie C. Wells, Dmitriy V. Melnikov, Joshua T. Cirillo, and Maria E. Gracheva

Phys. Rev. E 102, 063104 (2020) - Published 10 December, 2020

Characterizing most irregular small-scale structures in turbulence using local Hölder exponents

F. Nguyen, J.-P. Laval, and B. Dubrulle

Phys. Rev. E 102, 063105 (2020) - Published 11 December, 2020

Far-field flow and drift due to particles and organisms in density-stratified fluids

Vaseem A. Shaik and Arezoo M. Ardekani

Phys. Rev. E 102, 063106 (2020) - Published 21 December, 2020

Saffman-Taylor fingers at intermediate noise

Dan Shafir and David A. Kessler

Phys. Rev. E 102, 063107 (2020) - Published 28 December, 2020

Input-output inspired method for permissible perturbation amplitude of transitional wall-bounded shear flows

Chang Liu and Dennice F. Gayme

Phys. Rev. E 102, 063108 (2020) - Published 28 December, 2020

Giant plasmonic bubbles nucleation under different ambient pressures

Binglin Zeng, Yuliang Wang, Mikhail E. Zaytsev, Chenliang Xia, Harold J. W. Zandvliet, and Detlef Lohse

Phys. Rev. E 102, 063109 (2020) - Published 29 December, 2020

Inertial migration of a deformable capsule in an oscillatory flow in a microchannel

Ali Lafzi, Amir Hossein Raffiee, and Sadegh Dabiri

Phys. Rev. E 102, 063110 (2020) - Published 30 December, 2020

Strong shock as a stringent test for Onsager-Burnett equations

Ravi Sudam Jadhav and Amit Agrawal

Phys. Rev. E 102, 063111 (2020) - Published 30 December, 2020

Plasma Physics

Experimental observation of resonance manifold shrinking under zonal flow shear

T. Ullmann, B. Schmid, P. Manz, B. van Milligen, G. E. M. Tovar, and M. Ramisch

Phys. Rev. E 102, 063201 (2020) - Published 2 December, 2020

Viscosity of the magnetized strongly coupled one-component plasma

Brett Scheiner and Scott D. Baalrud

Phys. Rev. E 102, 063202 (2020) - Published 3 December, 2020

Continuous and discontinuous transitions in the depinning of two-dimensional dusty plasmas on a one-dimensional periodic substrate

L. Gu, W. Li, C. Reichhardt, C. J. O. Reichhardt, M. S. Murillo, and Yan Feng

Phys. Rev. E 102, 063203 (2020) - Published 8 December, 2020

Collisional ionization and recombination in degenerate plasmas beyond the free-electron-gas approximation

G. O. Williams and M. Fajardo

Phys. Rev. E 102, 063204 (2020) - Published 8 December, 2020

Kinetic characteristics of ions in an inertial electrostatic confinement device

D. Bhattacharjee, N. Buzarbaruah, S. R. Mohanty, and S. Adhikari

Phys. Rev. E 102, 063205 (2020) - Published 10 December, 2020

Hybrid stimulated Raman scattering–two-plasmon decay instability and 3/2 harmonic in steep-gradient femtosecond plasmas

I. Tsymbalov, D. Gorlova, and A. Savel'ev

Phys. Rev. E 102, 063206 (2020) - Published 14 December, 2020

Resonant four-photon scattering of collinear laser pulses in plasma

V. M. Malkin and N. J. Fisch

Phys. Rev. E 102, 063207 (2020) - Published 17 December, 2020

Time-resolved investigation of subnanosecond radiation from Al wire hybrid X pinches

T. A. Shelkovenko, S. A. Pikuz, I. N. Tilikin, A. Elshafiey, and D. A. Hammer

Phys. Rev. E 102, 063208 (2020) - Published 17 December, 2020

EDITORS' SUGGESTION

Computational Physics

Finite-size effects in the reconstruction of dynamic properties from ab initio path integral Monte Carlo simulations

Tobias Dornheim and Jan Vorberger

Phys. Rev. E 102, 063301 (2020) - Published 1 December, 2020

Spectroscopic analysis in molecular simulations with discretized Wiener-Khinchin theorem for Fourier-Laplace transformation

Akira Koyama, David A. Nicholson, Marat Andreev, Gregory C. Rutledge, Koji Fukao, and Takashi Yamamoto

Phys. Rev. E 102, 063302 (2020) - Published 9 December, 2020

Numerical method for computing the free energy of glasses

H. A. Vinutha and Daan Frenkel

Phys. Rev. E 102, 063303 (2020) - Published 10 December, 2020

First-principles calculation of the configurational energy density of states for a solid-state ion conductor with a variant of the Wang and Landau algorithm

Jason D. Howard

Phys. Rev. E 102, 063304 (2020) - Published 14 December, 2020

Effective algorithm for simulations of layer-by-layer growth during pulsed-laser deposition

Vít Gabriel, Pavel Kocán, and Václav Holý

Phys. Rev. E 102, 063305 (2020) - Published 14 December, 2020

Dissolution process of a single bubble under pressure with a large-density-ratio multicomponent multiphase lattice Boltzmann model

Xiaolong He, Jianmin Zhang, Qian Yang, Haonan Peng, and Weilin Xu

Phys. Rev. E 102, 063306 (2020) - Published 24 December, 2020

Force methods for the two-relaxation-times lattice Boltzmann

Bart Postma and Goncalo Silva

Phys. Rev. E 102, 063307 (2020) - Published 28 December, 2020

COMMENTS

Comment on “Measurability of nonequilibrium thermodynamics in terms of the Hamiltonian of mean force”

Peter Talkner and Peter Hänggi

Phys. Rev. E 102, 066101 (2020) - Published 21 December, 2020

Reply to “Comment on ‘Measurability of nonequilibrium thermodynamics in terms of the Hamiltonian of mean force’ ”

Philipp Strasberg and Massimiliano Esposito

Phys. Rev. E 102, 066102 (2020) - Published 21 December, 2020

ERRATA

Erratum: Approximate time-dependent current-voltage relations for currents exceeding the diffusion limit [Phys. Rev. E 101, 043113 (2020)]

Yoav Green

Phys. Rev. E 102, 069901 (2020) - Published 4 December, 2020

Erratum: Inferring domain of interactions among particles from ensemble of trajectories [Phys. Rev. E 102, 012404 (2020)]

Udoy S. Basak, Sulimon Sattari, Kazuki Horikawa, and Tamiki Komatsuzaki

Phys. Rev. E 102, 069902 (2020) - Published 14 December, 2020