Volume 101, Issue 6

June 2020

Browse Issues:

HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

Continuum percolation expressed in terms of density distributions

Fabian Coupette, Andreas Härtel, and Tanja Schilling

Phys. Rev. E 101, 062126 (2020) - Published 17 June, 2020

In a system of interacting particles in thermal equilibrium, the probability that two particles are part of the same cluster can be related to the distribution of nearest neighbors. The authors test their calculation on known analytical results in one dimension and discuss how to extend it to higher dimensions.

EDITORS' SUGGESTION

Spatially propagating activation of quorum sensing in Vibrio fischeri and the transition to low population density

Keval Patel, Coralis Rodriguez, Eric V. Stabb, and Stephen J. Hagen

Phys. Rev. E 101, 062421 (2020) - Published 26 June, 2020

Spatially dispersed colonies of bacteria can communicate through the release and detection of signal molecules. In their experiment, the authors monitor biofluorescence induced in cells when the concentration of a molecular signal in a colony reaches a critical threshold. Simulations of a model with growth and diffusion reproduce the experimental data quite well.

EDITORS' SUGGESTION

Yielding, rigidity, and tensile stress in sheared columns of hexapod granules

Yuchen Zhao, Jonathan Barés, and Joshua E. S. Socolar

Phys. Rev. E 101, 062903 (2020) - Published 23 June, 2020

Dry granular packings of particles with complex shapes can form stiff, free-standing structures like walls or arches. This paper reports on experiments and simulations with six-armed particles under shear, and describes a configuration of highly stressed particles within the packing that is responsible for providing rigidity.

EDITORS' SUGGESTION

Numerical simulation of knotted solutions for Maxwell equations

Antonio M. Valverde, Luis D. Angulo, M. R. Cabello, Salvador G. García, Juan J. Omiste, and Jianshu Luo

Phys. Rev. E 101, 063305 (2020) - Published 8 June, 2020

Hopf solutions of Maxwell’s equations, in which field lines form closed loops with knotted topologies, are relevant to diverse branches of physics. These solutions, often called hopfions, have generally been examined analytically. This paper provides a numerical method which opens up possibilities for exploring complex systems and interactions of hopfions that are not amenable to analytical studies.

RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Thermodynamics from first principles: Correlations and nonextensivity

S. N. Saadatmand, Tim Gould, E. G. Cavalcanti, and J. A. Vaccaro

Phys. Rev. E 101, 060101(R) (2020) - Published 1 June, 2020

RAPID COMMUNICATION

Chemical cloaking

Francesco Avanzini, Gianmaria Falasco, and Massimiliano Esposito

Phys. Rev. E 101, 060102(R) (2020) - Published 9 June, 2020

RAPID COMMUNICATION

Collision rate ansatz for the classical Toda lattice

Herbert Spohn

Phys. Rev. E 101, 060103(R) (2020) - Published 15 June, 2020

RAPID COMMUNICATION

Renormalization group as a Koopman operator

William T. Redman

Phys. Rev. E 101, 060104(R) (2020) - Published 19 June, 2020

RAPID COMMUNICATION

Critical properties of the two-dimensional $q$ -state clock model

Zi-Qian Li, Li-Ping Yang, Z. Y. Xie, Hong-Hao Tu, Hai-Jun Liao, and T. Xiang

Phys. Rev. E 101, 060105(R) (2020) - Published 24 June, 2020

Colloids, Complex Fluids, and Active Matter

RAPID COMMUNICATION

Microscopic theory of onset of decaging and bond-breaking activated dynamics in ultradense fluids with strong short-range attractions

Ashesh Ghosh and Kenneth S. Schweizer

Phys. Rev. E 101, 060601(R) (2020) - Published 19 June, 2020

Granular Materials

RAPID COMMUNICATION

Transition from clogging to continuous flow in constricted particle suspensions

Mathieu Souzy, Iker Zuriguel, and Alvaro Marin

Phys. Rev. E 101, 060901(R) (2020) - Published 15 June, 2020

Fluid Dynamics

RAPID COMMUNICATION

Large deviations, singularity, and lognormality of energy dissipation in turbulence

Itzhak Fouxon and Changhoon Lee

Phys. Rev. E 101, 061101(R) (2020) - Published 8 June, 2020

Plasma Physics

RAPID COMMUNICATION

Turbulence model reduction by deep learning

R. A. Heinonen and P. H. Diamond

Phys. Rev. E 101, 061201(R) (2020) - Published 4 June, 2020

RAPID COMMUNICATION

Reduction of the Coulomb logarithm due to electron-neutral collisions

Sergey A. Khrapak

Phys. Rev. E 101, 061202(R) (2020) - Published 12 June, 2020

Computational Physics

RAPID COMMUNICATION

Regulating lamellar eutectic trajectory through external perturbations

Ang Zhang, Jinglian Du, Zhipeng Guo, Qigui Wang, and Shoumei Xiong

Phys. Rev. E 101, 061301(R) (2020) - Published 22 June, 2020

ARTICLES

Statistical Physics

Effect of polyvalency on tethered molecular walkers on independent one-dimensional tracks

David Arredondo and Darko Stefanovic

Phys. Rev. E 101, 062101 (2020) - Published 1 June, 2020

Fluid-fluid demixing and density anomaly in a ternary mixture of hard spheres

Nathann T. Rodrigues and Tiago J. Oliveira

Phys. Rev. E 101, 062102 (2020) - Published 1 June, 2020

Generalized hydrodynamic analysis of transport through a finite open nanopore for two-component single-file systems

King C. Lai, Tyler J. Pleasant, Andrés García, and James W. Evans

Phys. Rev. E 101, 062103 (2020) - Published 1 June, 2020

Flat phase of polymerized membranes at two-loop order

O. Coquand, D. Mouhanna, and S. Teber

Phys. Rev. E 101, 062104 (2020) - Published 1 June, 2020

Three-dimensional phase transitions in multiflavor lattice scalar $SO (N_{c})$ gauge theories

Claudio Bonati, Andrea Pelissetto, and Ettore Vicari

Phys. Rev. E 101, 062105 (2020) - Published 1 June, 2020

Estimating entropy production by machine learning of short-time fluctuating currents

Shun Otsubo, Sosuke Ito, Andreas Dechant, and Takahiro Sagawa

Phys. Rev. E 101, 062106 (2020) - Published 1 June, 2020

Beyond the Lindblad master equation: Heat, work, and energy currents in boundary-driven spin chains

Luís H. Reis, Saulo H. S. Silva, and Emmanuel Pereira

Phys. Rev. E 101, 062107 (2020) - Published 1 June, 2020

Universality and crossover behavior of single-step growth models in $1 + 1$ and $2 + 1$ dimensions

E. Daryaei

Phys. Rev. E 101, 062108 (2020) - Published 1 June, 2020

Number of longest increasing subsequences

Phil Krabbe, Hendrik Schawe, and Alexander K. Hartmann

Phys. Rev. E 101, 062109 (2020) - Published 2 June, 2020

State-dependent diffusion in a bistable potential: Conditional probabilities and escape rates

Miguel V. Moreno, Daniel G. Barci, and Zochil González Arenas

Phys. Rev. E 101, 062110 (2020) - Published 2 June, 2020

Finite- $m$ scaling analysis of Berezinskii-Kosterlitz-Thouless phase transitions and entanglement spectrum for the six-state clock model

Hiroshi Ueda, Kouichi Okunishi, Kenji Harada, Roman Krčmár, Andrej Gendiar, Seiji Yunoki, and Tomotoshi Nishino

Phys. Rev. E 101, 062111 (2020) - Published 4 June, 2020

Aging exponents for nonequilibrium dynamics following quenches from critical points

Koyel Das, Nalina Vadakkayil, and Subir K. Das

Phys. Rev. E 101, 062112 (2020) - Published 4 June, 2020

Refined nonuniform embedding for coupling detection in multivariate time series

Ziyu Jia, Youfang Lin, Yunxiao Liu, Zehui Jiao, and Jing Wang

Phys. Rev. E 101, 062113 (2020) - Published 5 June, 2020

Stable and charge-switchable quantum batteries

Alan C. Santos, Andreia Saguia, and Marcelo S. Sarandy

Phys. Rev. E 101, 062114 (2020) - Published 8 June, 2020

Non-Markovian dynamics of quantum systems coupled with several mixed fermionic-bosonic heat baths

A. A. Hovhannisyan, V. V. Sargsyan, G. G. Adamian, N. V. Antonenko, and D. Lacroix

Phys. Rev. E 101, 062115 (2020) - Published 8 June, 2020

Quantum entanglement and the Born-Markov approximation for an open quantum system

Andrey R. Kolovsky

Phys. Rev. E 101, 062116 (2020) - Published 9 June, 2020

Continuous-time random walks under power-law resetting

Anna S. Bodrova and Igor M. Sokolov

Phys. Rev. E 101, 062117 (2020) - Published 11 June, 2020

Model for the phase separation of poly( $N$ -isopropylacrylamide)–clay nanocomposite hydrogel based on energy-density functional

Xuelian Bao, Hua Li, and Hui Zhang

Phys. Rev. E 101, 062118 (2020) - Published 12 June, 2020

Large systems of random linear equations with nonnegative solutions: Characterizing the solvable and the unsolvable phase

Stefan Landmann and Andreas Engel

Phys. Rev. E 101, 062119 (2020) - Published 12 June, 2020

Run-and-tumble particles in two dimensions: Marginal position distributions

Ion Santra, Urna Basu, and Sanjib Sabhapandit

Phys. Rev. E 101, 062120 (2020) - Published 15 June, 2020

Optimal performance of a three-level quantum refrigerator

Varinder Singh, Tanmoy Pandit, and Ramandeep S. Johal

Phys. Rev. E 101, 062121 (2020) - Published 15 June, 2020

High-heat-flux rectification due to a localized thermal diode

Tristram J. Alexander

Phys. Rev. E 101, 062122 (2020) - Published 15 June, 2020

Thermodynamic uncertainty relations and molecular-scale energy conversion

M. W. Jack, N. J. López-Alamilla, and K. J. Challis

Phys. Rev. E 101, 062123 (2020) - Published 15 June, 2020

First-passage percolation under extreme disorder: From bond percolation to Kardar-Parisi-Zhang universality

Daniel Villarrubia, Iván Álvarez Domenech, Silvia N. Santalla, Javier Rodríguez-Laguna, and Pedro Córdoba-Torres

Phys. Rev. E 101, 062124 (2020) - Published 16 June, 2020

Reversal symmetries for cyclic paths away from thermodynamic equilibrium

John W. Biddle and Jeremy Gunawardena

Phys. Rev. E 101, 062125 (2020) - Published 16 June, 2020

EDITORS' SUGGESTION

Continuum percolation expressed in terms of density distributions

Fabian Coupette, Andreas Härtel, and Tanja Schilling

Phys. Rev. E 101, 062126 (2020) - Published 17 June, 2020

Lévy walk dynamics in an external harmonic potential

Pengbo Xu, Tian Zhou, Ralf Metzler, and Weihua Deng

Phys. Rev. E 101, 062127 (2020) - Published 17 June, 2020

Construction of subcritical isotherms for model and real gases on the basis of Mayer's cluster expansion

M. V. Ushcats and L. A. Bulavin

Phys. Rev. E 101, 062128 (2020) - Published 17 June, 2020

Negative mobility, sliding, and delocalization for stochastic networks

Dima Boriskovsky and Doron Cohen

Phys. Rev. E 101, 062129 (2020) - Published 17 June, 2020

Active velocity processes with suprathermal stationary distributions and long-time tails

Tirthankar Banerjee, Urna Basu, and Christian Maes

Phys. Rev. E 101, 062130 (2020) - Published 18 June, 2020

Generalization of the Kubo relation for confined motion and ergodicity breakdown

Jing-Dong Bao

Phys. Rev. E 101, 062131 (2020) - Published 18 June, 2020

Receiver operating characteristic curves for a simple stochastic process that carries a static signal

Davide Bernardi and Benjamin Lindner

Phys. Rev. E 101, 062132 (2020) - Published 18 June, 2020

Exponential damping induced by random and realistic perturbations

Jonas Richter, Fengping Jin, Lars Knipschild, Hans De Raedt, Kristel Michielsen, Jochen Gemmer, and Robin Steinigeweg

Phys. Rev. E 101, 062133 (2020) - Published 19 June, 2020

Behavior of the random-field $X Y$ model on simple cubic lattices at $h_{r} = 1.5$

Ronald Fisch

Phys. Rev. E 101, 062134 (2020) - Published 19 June, 2020

Hilbert space average of transition probabilities

Nico Hahn, Thomas Guhr, and Daniel Waltner

Phys. Rev. E 101, 062135 (2020) - Published 22 June, 2020

Three-dimensional monopole-free ${CP}^{N - 1}$ models

Andrea Pelissetto and Ettore Vicari

Phys. Rev. E 101, 062136 (2020) - Published 22 June, 2020

Measures of distinguishability between stochastic processes

Chengran Yang, Felix C. Binder, Mile Gu, and Thomas J. Elliott

Phys. Rev. E 101, 062137 (2020) - Published 23 June, 2020

Phase transitions in hard-core lattice gases on the honeycomb lattice

Filipe C. Thewes and Heitor C. M. Fernandes

Phys. Rev. E 101, 062138 (2020) - Published 24 June, 2020

Memory through a hidden martingale process in progressive quenching

Charles Moslonka and Ken Sekimoto

Phys. Rev. E 101, 062139 (2020) - Published 24 June, 2020

Synchronization and fluctuations: Coupling a finite number of stochastic units

Alexandre Rosas, Jaime Cisternas, Daniel Escaff, Italo'Ivo Lima Dias Pinto, and Katja Lindenberg

Phys. Rev. E 101, 062140 (2020) - Published 25 June, 2020

Eigenstate thermalization and ensemble equivalence in few-body fermionic systems

Ph. Jacquod

Phys. Rev. E 101, 062141 (2020) - Published 25 June, 2020

Symmetry-induced fluctuation relations for dynamical observables irrespective of their behavior under time reversal

Stefano Marcantoni, Carlos Pérez-Espigares, and Juan P. Garrahan

Phys. Rev. E 101, 062142 (2020) - Published 26 June, 2020

Bond percolation between $k$ separated points on a square lattice

S. S. Manna and Robert M. Ziff

Phys. Rev. E 101, 062143 (2020) - Published 26 June, 2020

Stochastic Floquet quantum heat engines and stochastic efficiencies

Fei Liu and Shanhe Su

Phys. Rev. E 101, 062144 (2020) - Published 29 June, 2020

Stochastic resonance and hysteresis in climate with state-dependent fluctuations

Moupriya Das and Holger Kantz

Phys. Rev. E 101, 062145 (2020) - Published 29 June, 2020

Conformal invariance in the nonperturbative renormalization group: A rationale for choosing the regulator

Ivan Balog, Gonzalo De Polsi, Matthieu Tissier, and Nicolás Wschebor

Phys. Rev. E 101, 062146 (2020) - Published 29 June, 2020

Random walks on networks with stochastic resetting

Alejandro P. Riascos, Denis Boyer, Paul Herringer, and José L. Mateos

Phys. Rev. E 101, 062147 (2020) - Published 29 June, 2020

Towards a generalization of information theory for hierarchical partitions

Juan Ignacio Perotti, Nahuel Almeira, and Fabio Saracco

Phys. Rev. E 101, 062148 (2020) - Published 30 June, 2020

Nonlinear Dynamics and Chaos

Quantization and interference of a quantum billiard with fourfold rotational symmetry

Zi-Yuan Li and Liang Huang

Phys. Rev. E 101, 062201 (2020) - Published 1 June, 2020

Oscillatory behavior in a system of swarmalators with a short-range repulsive interaction

F. Jiménez-Morales

Phys. Rev. E 101, 062202 (2020) - Published 1 June, 2020

Emergence of second coherent regions for breathing chimera states

Yusuke Suda and Koji Okuda

Phys. Rev. E 101, 062203 (2020) - Published 2 June, 2020

Grid pattern emerging from complex dynamics of defects

Noriko Oikawa, Tomohiro Gunji, and Yoshiki Hidaka

Phys. Rev. E 101, 062204 (2020) - Published 4 June, 2020

Modern concepts of quantum equilibration do not rule out strange relaxation dynamics

Lars Knipschild and Jochen Gemmer

Phys. Rev. E 101, 062205 (2020) - Published 15 June, 2020

When three is a crowd: Chaos from clusters of Kuramoto oscillators with inertia

Barrett N. Brister, Vladimir N. Belykh, and Igor V. Belykh

Phys. Rev. E 101, 062206 (2020) - Published 18 June, 2020

Physics-enhanced neural networks learn order and chaos

Anshul Choudhary, John F. Lindner, Elliott G. Holliday, Scott T. Miller, Sudeshna Sinha, and William L. Ditto

Phys. Rev. E 101, 062207 (2020) - Published 18 June, 2020

Dirac particles in transparent quantum graphs: Tunable transport of relativistic quasiparticles in branched structures

J. R. Yusupov, K. K. Sabirov, Q. U. Asadov, M. Ehrhardt, and D. U. Matrasulov

Phys. Rev. E 101, 062208 (2020) - Published 18 June, 2020

Deep learning to discover and predict dynamics on an inertial manifold

Alec J. Linot and Michael D. Graham

Phys. Rev. E 101, 062209 (2020) - Published 18 June, 2020

Understanding the origin of extreme events in El Niño southern oscillation

Arnob Ray, Sarbendu Rakshit, Gopal K. Basak, Syamal K. Dana, and Dibakar Ghosh

Phys. Rev. E 101, 062210 (2020) - Published 19 June, 2020

Anomalous diffusion of discrete solitons driven by evolving disorder

Zhi-Yuan Sun and Xin Yu

Phys. Rev. E 101, 062211 (2020) - Published 23 June, 2020

Transient chaos under coordinate transformations in relativistic systems

D. S. Fernández, Á. G. López, J. M. Seoane, and M. A. F. Sanjuán

Phys. Rev. E 101, 062212 (2020) - Published 23 June, 2020

Model reduction for the Kuramoto-Sakaguchi model: The importance of nonentrained rogue oscillators

Wenqi Yue, Lauren D. Smith, and Georg A. Gottwald

Phys. Rev. E 101, 062213 (2020) - Published 23 June, 2020

Effects of coherent dynamics of stochastic deep-water waves

A. V. Slunyaev

Phys. Rev. E 101, 062214 (2020) - Published 26 June, 2020

Using correlation diagrams to study the vibrational spectrum of highly nonlinear floppy molecules: The K-CN case

H. Párraga, F. J. Arranz, R. M. Benito, and F. Borondo

Phys. Rev. E 101, 062215 (2020) - Published 26 June, 2020

Networks and Complex Systems

Control of brain network dynamics across diverse scales of space and time

Evelyn Tang, Harang Ju, Graham L. Baum, David R. Roalf, Theodore D. Satterthwaite, Fabio Pasqualetti, and Danielle S. Bassett

Phys. Rev. E 101, 062301 (2020) - Published 1 June, 2020

Thresholding normally distributed data creates complex networks

George T. Cantwell, Yanchen Liu, Benjamin F. Maier, Alice C. Schwarze, Carlos A. Serván, Jordan Snyder, and Guillaume St-Onge

Phys. Rev. E 101, 062302 (2020) - Published 1 June, 2020

Fitting in and breaking up: A nonlinear version of coevolving voter models

Yacoub H. Kureh and Mason A. Porter

Phys. Rev. E 101, 062303 (2020) - Published 2 June, 2020

Critical network cascades with re-excitable nodes: Why treelike approximations usually work, when they break down, and how to correct them

Sarthak Chandra, Edward Ott, and Michelle Girvan

Phys. Rev. E 101, 062304 (2020) - Published 8 June, 2020

Spatial strength centrality and the effect of spatial embeddings on network architecture

Andrew Liu and Mason A. Porter

Phys. Rev. E 101, 062305 (2020) - Published 9 June, 2020

Competition between vaccination and disease spreading

Mozhgan Khanjanianpak, Nahid Azimi-Tafreshi, and Claudio Castellano

Phys. Rev. E 101, 062306 (2020) - Published 11 June, 2020

Dynamical phase separation on rhythmogenic neuronal networks

Mihai Bibireata, Valentin M. Slepukhin, and Alex J. Levine

Phys. Rev. E 101, 062307 (2020) - Published 11 June, 2020

Analysis of the convergence of the degree distribution of contracting random networks towards a Poisson distribution using the relative entropy

Ido Tishby, Ofer Biham, and Eytan Katzav

Phys. Rev. E 101, 062308 (2020) - Published 18 June, 2020

Strategy equilibrium in dilemma games with off-diagonal payoff perturbations

Marco A. Amaral and Marco A. Javarone

Phys. Rev. E 101, 062309 (2020) - Published 19 June, 2020

Structure of percolating clusters in random clustered networks

Takehisa Hasegawa and Shogo Mizutaka

Phys. Rev. E 101, 062310 (2020) - Published 22 June, 2020

Quantifying uncertainty in a predictive model for popularity dynamics

Joseph D. O'Brien, Alberto Aleta, Yamir Moreno, and James P. Gleeson

Phys. Rev. E 101, 062311 (2020) - Published 22 June, 2020

Performance of weak species in the simplest generalization of the rock-paper-scissors model to four species

P. P. Avelino, B. F. de Oliveira, and R. S. Trintin

Phys. Rev. E 101, 062312 (2020) - Published 22 June, 2020

Coupled dynamics on hypergraphs: Master stability of steady states and synchronization

Raffaella Mulas, Christian Kuehn, and Jürgen Jost

Phys. Rev. E 101, 062313 (2020) - Published 29 June, 2020

Biological Physics

Limitations on electromagnetic communication by vibrational resonances in biological systems

Kyle A. Thackston, Dimitri D. Deheyn, and Daniel F. Sievenpiper

Phys. Rev. E 101, 062401 (2020) - Published 1 June, 2020

Optimal trapping stability of Escherichia coli in oscillating optical tweezers

Amarjeet Yadav, Anindita Dutta, Pramod Kumar, Yuval Dahan, Alexander Aranovich, and Mario Feingold

Phys. Rev. E 101, 062402 (2020) - Published 1 June, 2020

Effect of cell geometry in the evaluation of erythrocyte viscoelastic properties

Fran Gómez, Leandro S. Silva, Glauber Ribeiro de Sousa Araújo, Susana Frases, Ana Acacia S. Pinheiro, Ubirajara Agero, Bruno Pontes, and Nathan Bessa Viana

Phys. Rev. E 101, 062403 (2020) - Published 2 June, 2020

Dynamics of ribosomes in mRNA translation under steady- and nonsteady-state conditions

Juraj Szavits-Nossan and Martin R. Evans

Phys. Rev. E 101, 062404 (2020) - Published 3 June, 2020

Relationship between velocities, tractions, and intercellular stresses in the migrating epithelial monolayer

Yoav Green, Jeffrey J. Fredberg, and James P. Butler

Phys. Rev. E 101, 062405 (2020) - Published 3 June, 2020

Exponential trajectories, cell size fluctuations, and the adder property in bacteria follow from simple chemical dynamics and division control

Parth Pratim Pandey, Harshant Singh, and Sanjay Jain

Phys. Rev. E 101, 062406 (2020) - Published 4 June, 2020

Development of transmembrane potential in concentric spherical, confocal spheroidal, and bispherical vesicles subjected to nanosecond-pulse electric field

Shoubhanik Nath, Kumari Priti Sinha, and Rochish M. Thaokar

Phys. Rev. E 101, 062407 (2020) - Published 8 June, 2020

Alternating regimes of motion in a model with cell-cell interactions

Nara Guisoni, Karina I. Mazzitello, and Luis Diambra

Phys. Rev. E 101, 062408 (2020) - Published 11 June, 2020

Quantifying epigenetic stability with minimum action paths

Amogh Sood and Bin Zhang

Phys. Rev. E 101, 062409 (2020) - Published 11 June, 2020

Spatial gradient sensing and chemotaxis via excitability in $Dictyostelium discoideum$

Daniel P. Shams, Xingbo Yang, Pankaj Mehta, and David J. Schwab

Phys. Rev. E 101, 062410 (2020) - Published 12 June, 2020

Ionization clustering on charged particle tracks as a seed for biologically relevant radiation effects

K. Kinoshita and Y. Zabarmawi

Phys. Rev. E 101, 062411 (2020) - Published 15 June, 2020

Transplatin ineffectiveness against cancer from a molecular perspective: A single-molecule force-spectroscopy study

L. Oliveira, J. M. Caquito, Jr., and M. S. Rocha

Phys. Rev. E 101, 062412 (2020) - Published 15 June, 2020

Fibril growth captured by electrical properties of amyloid- $β$ and human islet amyloid polypeptide

Prasoon Awasthi, Anurag Singh, Suparna Khatun, Amar Nath Gupta, and Soumen Das

Phys. Rev. E 101, 062413 (2020) - Published 15 June, 2020

Generative models of T-cell receptor sequences

Giulio Isacchini, Zachary Sethna, Yuval Elhanati, Armita Nourmohammad, Aleksandra M. Walczak, and Thierry Mora

Phys. Rev. E 101, 062414 (2020) - Published 15 June, 2020

Towards spectrally selective catastrophic response

V. R. Gabriele, A. Shvonski, C. S. Hoffman, M. Giersig, A. Herczynski, M. J. Naughton, and K. Kempa

Phys. Rev. E 101, 062415 (2020) - Published 18 June, 2020

Intracellular motor-driven transport of rodlike smooth organelles along microtubules

A. B. Fernández Casafuz, M. C. De Rossi, and L. Bruno

Phys. Rev. E 101, 062416 (2020) - Published 19 June, 2020

Using the generalized Born surface area model to fold proteins yields more effective sampling while qualitatively preserving the folding landscape

Peng Tao and Yi Xiao

Phys. Rev. E 101, 062417 (2020) - Published 22 June, 2020

Skepticism and rumor spreading: The role of spatial correlations

Marco Antonio Amaral, W. G. Dantas, and Jeferson J. Arenzon

Phys. Rev. E 101, 062418 (2020) - Published 25 June, 2020

Evolution of cooperation under punishment

Shiping Gao, Jinming Du, and Jinling Liang

Phys. Rev. E 101, 062419 (2020) - Published 25 June, 2020

Temporal precision of molecular events with regulation and feedback

Shivam Gupta, Sean Fancher, Hendrik C. Korswagen, and Andrew Mugler

Phys. Rev. E 101, 062420 (2020) - Published 26 June, 2020

EDITORS' SUGGESTION

Spatially propagating activation of quorum sensing in Vibrio fischeri and the transition to low population density

Keval Patel, Coralis Rodriguez, Eric V. Stabb, and Stephen J. Hagen

Phys. Rev. E 101, 062421 (2020) - Published 26 June, 2020

Statistical mechanics of DNA-nanotube adsorption

Shushanik Tonoyan, Davit Khechoyan, Yevgeni Mamasakhlisov, and Artem Badasyan

Phys. Rev. E 101, 062422 (2020) - Published 29 June, 2020

Colloids, Complex Fluids, and Active Matter

Oscillatory surface deformation of paramagnetic rare-earth solutions driven by an inhomogeneous magnetic field

B. Fritzsche, G. Mutschke, T. J. Meinel, X. Yang, Z. Lei, and K. Eckert

Phys. Rev. E 101, 062601 (2020) - Published 3 June, 2020

Dynamics of Magnus-dominated particle clusters, collisions, pinning, and ratchets

C. Reichhardt and C. J. O. Reichhardt

Phys. Rev. E 101, 062602 (2020) - Published 3 June, 2020

Sodium ion self-diffusion in molten NaBr probed over different length scales

F. Demmel

Phys. Rev. E 101, 062603 (2020) - Published 8 June, 2020

Reverse osmotic effect in active matter

Hyeongjoo Row and John F. Brady

Phys. Rev. E 101, 062604 (2020) - Published 11 June, 2020

Testing a thermodynamic approach to collective animal behavior in laboratory fish schools

Julia A. Giannini and James G. Puckett

Phys. Rev. E 101, 062605 (2020) - Published 9 June, 2020

Otherwise identical particles with differing, fixed speeds demix under time-reversible dynamics

G. Baglietto, A. Seif, T. S. Grigera, and W. Paul

Phys. Rev. E 101, 062606 (2020) - Published 18 June, 2020

Run-and-tumble bacteria slowly approaching the diffusive regime

Andrea Villa-Torrealba, Cristóbal Chávez-Raby, Pablo de Castro, and Rodrigo Soto

Phys. Rev. E 101, 062607 (2020) - Published 22 June, 2020

Chiral motion in colloidal electrophoresis

Lara Braverman, Aaron Mowitz, and Thomas A. Witten

Phys. Rev. E 101, 062608 (2020) - Published 23 June, 2020

Liquid Crystals

Formation of grid patterns in an ac-driven electroconvection system

Jong-Hoon Huh and Haruki Osoguchi

Phys. Rev. E 101, 062701 (2020) - Published 1 June, 2020

Electrically driven nematic flow in microfluidic devices containing a temperature gradient

A. V. Zakharov, P. V. Maslennikov, and S. V. Pasechnik

Phys. Rev. E 101, 062702 (2020) - Published 8 June, 2020

Characterization of surface anchoring energy of nematic liquid crystals via electrohydrodynamic instability

Dae Geon Ryu, Jong-Hoon Huh, Young-Ki Kim, and Jin Seog Gwag

Phys. Rev. E 101, 062703 (2020) - Published 18 June, 2020

Umbilical defect dynamics in an inhomogeneous nematic liquid crystal layer

Valeska Zambra, Marcel G. Clerc, Raouf Barboza, Umberto Bortolozzo, and Stefania Residori

Phys. Rev. E 101, 062704 (2020) - Published 19 June, 2020

Mechanogeometry of nanowrinkling in cholesteric liquid crystal surfaces

Ziheng Wang, Phillip Servio, and Alejandro D. Rey

Phys. Rev. E 101, 062705 (2020) - Published 19 June, 2020

Rodlike molecules in extreme confinement

Xiaomei Yao and Jeff Z. Y. Chen

Phys. Rev. E 101, 062706 (2020) - Published 29 June, 2020

Algebraic equations of state for the liquid crystalline phase behavior of hard rods

V. F. D. Peters, M. Vis, H. H. Wensink, and R. Tuinier

Phys. Rev. E 101, 062707 (2020) - Published 29 June, 2020

Films and Interfaces

Kinetic equation of concurrent nucleation and chemical aging of an ensemble of aqueous organic aerosols

Yuri S. Djikaev and Eli Ruckenstein

Phys. Rev. E 101, 062801 (2020) - Published 5 June, 2020

Thin-film modeling of resting and moving active droplets

Sarah Trinschek, Fenna Stegemerten, Karin John, and Uwe Thiele

Phys. Rev. E 101, 062802 (2020) - Published 15 June, 2020

Newton-Cartan submanifolds and fluid membranes

Jay Armas, Jelle Hartong, Emil Have, Bjarke F. Nielsen, and Niels A. Obers

Phys. Rev. E 101, 062803 (2020) - Published 18 June, 2020

Granular Materials

Microstructural analysis of sheared polydisperse polyhedral grains

David Cantor, Emilien Azéma, and Itthichai Preechawuttipong

Phys. Rev. E 101, 062901 (2020) - Published 1 June, 2020

Giant amplification of small perturbations in frictional amorphous solids

Harish Charan, Oleg Gendelman, Itamar Procaccia, and Yarden Sheffer

Phys. Rev. E 101, 062902 (2020) - Published 15 June, 2020

EDITORS' SUGGESTION

Yielding, rigidity, and tensile stress in sheared columns of hexapod granules

Yuchen Zhao, Jonathan Barés, and Joshua E. S. Socolar

Phys. Rev. E 101, 062903 (2020) - Published 23 June, 2020

Stress-induced ordering of two-dimensional packings of elastic spheres

Zhenwei Yao

Phys. Rev. E 101, 062904 (2020) - Published 29 June, 2020

Solid Mechanics

Multifunctional twisted kagome lattices: Tuning by pruning mechanical metamaterials

Danilo B. Liarte, O. Stenull, and T. C. Lubensky

Phys. Rev. E 101, 063001 (2020) - Published 1 June, 2020

Tough-brittle transition in the planar fracture of unidirectional fiber composites

Uttam S. Kachhwah and Sivasambu Mahesh

Phys. Rev. E 101, 063002 (2020) - Published 1 June, 2020

Dynamics of Kresling origami deployment

N. Kidambi and K. W. Wang

Phys. Rev. E 101, 063003 (2020) - Published 5 June, 2020

Brittle-ductile transitions in a metallic glass

J. S. Langer

Phys. Rev. E 101, 063004 (2020) - Published 19 June, 2020

Dislocation screening in crystals with spherical topology

Ireth García-Aguilar, Piermarco Fonda, and Luca Giomi

Phys. Rev. E 101, 063005 (2020) - Published 22 June, 2020

Fluid Dynamics

Harnessing random low Reynolds number flow for net migration

Takeru Morita, Toshihiro Omori, Yohei Nakayama, Shoichi Toyabe, and Takuji Ishikawa

Phys. Rev. E 101, 063101 (2020) - Published 3 June, 2020

Stationary scaling in small-scale turbulent dynamo problem

A. V. Kopyev, A. S. Il'yn, V. A. Sirota, and K. P. Zybin

Phys. Rev. E 101, 063102 (2020) - Published 5 June, 2020

Multiple eigenmodes of the Rayleigh-Taylor instability observed for a fluid interface with smoothly varying density. III. Excitation and nonlinear evolution

Zhengfeng Fan and Ming Dong

Phys. Rev. E 101, 063103 (2020) - Published 19 June, 2020

Decomposing thermal fluctuations with hydrodynamic modes

Xiaohui Deng, Xiaoyu Wei, Xiaoping Wang, and Ping Sheng

Phys. Rev. E 101, 063104 (2020) - Published 22 June, 2020

Squirming in a viscous fluid enclosed by a Brinkman medium

Herve Nganguia, Lailai Zhu, D. Palaniappan, and On Shun Pak

Phys. Rev. E 101, 063105 (2020) - Published 30 June, 2020

Plasma Physics

Viscous droplet in nonthermal plasma: Instability, fingering process, and droplet fragmentation

Lucia Potočňáková, Petr Synek, and Tomáš Hoder

Phys. Rev. E 101, 063201 (2020) - Published 1 June, 2020

Implementing a microphysics model in hydrodynamic simulations to study the initial plasma formation in dielectric ablator materials for direct-drive implosions

Arnab Kar, S. X. Hu, G. Duchateau, J. Carroll-Nellenback, and P. B. Radha

Phys. Rev. E 101, 063202 (2020) - Published 1 June, 2020

Influence of dust particles on ionization equilibrium in partially ionized plasmas

A. E. Davletov, F. Kurbanov, and Ye. S. Mukhametkarimov

Phys. Rev. E 101, 063203 (2020) - Published 5 June, 2020

Pair-beam propagation in a magnetized plasma for modeling the polarized radiation emission from gamma-ray bursts in laboratory astrophysics experiments

Ujjwal Sinha and Naveen Kumar

Phys. Rev. E 101, 063204 (2020) - Published 8 June, 2020

Strange attractors induced by melting in systems with nonreciprocal effective interactions

Nikita P. Kryuchkov, Lukiya A. Mistryukova, Andrei V. Sapelkin, and Stanislav O. Yurchenko

Phys. Rev. E 101, 063205 (2020) - Published 26 June, 2020

Optical Bloch modeling of femtosecond-laser-induced electron dynamics in dielectrics

E. Smetanina, P. González de Alaiza Martínez, I. Thiele, B. Chimier, A. Bourgeade, and G. Duchateau

Phys. Rev. E 101, 063206 (2020) - Published 29 June, 2020

Hybrid target design for imprint mitigation in direct-drive inertial confinement fusion

L. Ceurvorst, R. Betti, A. Casner, V. Gopalaswamy, A. Bose, S. X. Hu, E. M. Campbell, S. P. Regan, C. A. McCoy, M. Karasik, J. Peebles, M. Tabak, and W. Theobald

Phys. Rev. E 101, 063207 (2020) - Published 30 June, 2020