HIGHLIGHTED ARTICLES

Identifying knot types of polymer conformations by machine learning

Olafs Vandans, Kaiyuan Yang, Zhongtao Wu, and Liang Dai

Phys. Rev. E 101, 022502 (2020) - Published 11 February, 2020

Identifying if two knots are similar is an open problem that cuts across several disciplines from mathematics to physical sciences; the main challenge is that the knot type is a global property that cannot be determined by looking only locally. In this paper, the authors apply supervised learning techniques to the knot recognition problem in polymers, showing what artificial neural networks can do to address it.

Translational nucleosome positioning: A computational study

J. Neipel, G. Brandani, and H. Schiessel

Phys. Rev. E 101, 022405 (2020) - Published 10 February, 2020

How to predict the positions of nucleosomes on DNA is an important problem. The authors show that a simple coarse-grained model of DNA is unable to account for all aspects of the positioning, and they propose a model that assumes the elasticity of DNA changes when it is part of the nucleosome. The new approach shows excellent agreement with previously published experimental work.

Pattern localization to a domain edge

Manon C. Wigbers, Fridtjof Brauns, Tobias Hermann, and Erwin Frey

Phys. Rev. E 101, 022414 (2020) - Published 18 February, 2020

This paper uses a reaction–diffusion model to explain the formation of protein patterns in heterogeneous conditions, for example inside cells. The authors propose an explanation of how proteins collect at domain edges in the environment based on a local mass redistribution that does not occur in homogeneous systems.

Symmetry of membrane protein polyhedra with heterogeneous protein size

Mingyuan Ma, Di Li, Osman Kahraman, and Christoph A. Haselwandter

Phys. Rev. E 101, 022417 (2020) - Published 24 February, 2020

Membrane protein polyhedral nanoparticles (MPPNs) are two-dimensional assemblies of proteins and lipids that form closed lipid bilayer vesicles. This paper describes a minimal molecular model, similar to one used for viral capsids, that successfully predicts MPPNs to be found in regular shapes, such as snub cubes, even if the protein sizes are heterogeneous.

RAPID COMMUNICATIONS

Statistical Physics

Manifolds in a high-dimensional random landscape: Complexity of stationary points and depinning

Yan V. Fyodorov and Pierre Le Doussal

Phys. Rev. E 101, 020101(R) (2020) - Published 18 February, 2020

Nonlinear Dynamics and Chaos

Quantum synchronization in nanoscale heat engines

Noufal Jaseem, Michal Hajdušek, Vlatko Vedral, Rosario Fazio, Leong-Chuan Kwek, and Sai Vinjanampathy

Phys. Rev. E 101, 020201(R) (2020) - Published 5 February, 2020

Networks and Complex Systems

Cascading failures in networks of heterogeneous node behavior

O. Smith, J. Crowe, E. Farcot, R. D. O'Dea, and K. I. Hopcraft

Phys. Rev. E 101, 020301(R) (2020) - Published 26 February, 2020

Colloids, Complex Fluids, and Active Matter

Colloidal particle gel models using many-body potential interactions

Hamed Hatami-Marbini and Jibril B. Coulibaly

Phys. Rev. E 101, 020601(R) (2020) - Published 13 February, 2020

Plasma Physics

Turbulent pinch in whole-plasma simulations of a dipole-confined plasma

Weike Ou, Lipeng Wang, Bo Li, and B. N. Rogers

Phys. Rev. E 101, 021201(R) (2020) - Published 10 February, 2020

Computational Physics

Multicanonical Monte Carlo ensemble growth algorithm

Graziano Vernizzi, Trung Dac Nguyen, Henri Orland, and Monica Olvera de la Cruz

Phys. Rev. E 101, 021301(R) (2020) - Published 26 February, 2020

ARTICLES

Statistical Physics

Feedback control of surface roughness in a one-dimensional Kardar-Parisi-Zhang growth process

Priyanka, Uwe C. Täuber, and Michel Pleimling

Phys. Rev. E 101, 022101 (2020) - Published 3 February, 2020

Prediction in a driven-dissipative system displaying a continuous phase transition using machine learning

Chon-Kit Pun, Sakib Matin, W. Klein, and Harvey Gould

Phys. Rev. E 101, 022102 (2020) - Published 4 February, 2020

Effective ergodicity breaking phase transition in a driven-dissipative system

Sakib Matin, Chon-Kit Pun, Harvey Gould, and W. Klein

Phys. Rev. E 101, 022103 (2020) - Published 4 February, 2020

Alternative characterization of the nematic transition in deposition of rods on two-dimensional lattices

E. E. Vogel, G. Saravia, A. J. Ramirez-Pastor, and Marcelo Pasinetti

Phys. Rev. E 101, 022104 (2020) - Published 4 February, 2020

Spatial organization of active particles with field-mediated interactions

Ruben Zakine, Jean-Baptiste Fournier, and Frédéric van Wijland

Phys. Rev. E 101, 022105 (2020) - Published 5 February, 2020

Finite-temperature many-body perturbation theory in the canonical ensemble

Punit K. Jha and So Hirata

Phys. Rev. E 101, 022106 (2020) - Published 6 February, 2020

Time-dependent classification of protein diffusion types: A statistical detection of mean-squared-displacement exponent transitions

Katarzyna Hubicka and Joanna Janczura

Phys. Rev. E 101, 022107 (2020) - Published 7 February, 2020

Percolation thresholds for discorectangles: Numerical estimation for a range of aspect ratios

Yuri Yu. Tarasevich and Andrei V. Eserkepov

Phys. Rev. E 101, 022108 (2020) - Published 7 February, 2020

Population switching under a time-varying environment

Tom Israeli and Michael Assaf

Phys. Rev. E 101, 022109 (2020) - Published 10 February, 2020

Information geometry aspects of minimum entropy production paths from quantum mechanical evolutions

Carlo Cafaro and Paul M. Alsing

Phys. Rev. E 101, 022110 (2020) - Published 10 February, 2020

Partial equivalence of statistical ensembles in a simple spin model with discontinuous phase transitions

Agata Fronczak, Piotr Fronczak, and Grzegorz Siudem

Phys. Rev. E 101, 022111 (2020) - Published 10 February, 2020

Discontinuous transitions can survive to quenched disorder in a two-dimensional nonequilibrium system

Minos A. Neto and E. Brigatti

Phys. Rev. E 101, 022112 (2020) - Published 11 February, 2020

Fluctuation theorem in cavity quantum electrodynamics systems

Tatsuro Yuge and Makoto Yamaguchi

Phys. Rev. E 101, 022113 (2020) - Published 11 February, 2020

Thermodynamics of Markov processes with nonextensive entropy and free energy

Liangrong Peng, Hong Qian, and Liu Hong

Phys. Rev. E 101, 022114 (2020) - Published 11 February, 2020

Mean-field control for efficient mixing of energy loads

David Métivier and Michael Chertkov

Phys. Rev. E 101, 022115 (2020) - Published 12 February, 2020

Effective thermodynamics of two interacting underdamped Brownian particles

Tim Herpich, Kamran Shayanfard, and Massimiliano Esposito

Phys. Rev. E 101, 022116 (2020) - Published 12 February, 2020

Three-terminal refrigerator based on resonant-tunneling quantum wells

Zebin Lin, Yun Yun Yang, Wei Li, Jianghui Wang, and Jizhou He

Phys. Rev. E 101, 022117 (2020) - Published 13 February, 2020

Optimal control of protein copy number

Steven Blaber and David A. Sivak

Phys. Rev. E 101, 022118 (2020) - Published 18 February, 2020

Designing bistability or multistability in macroscopic diffusive systems

Jun Wang, Gaole Dai, Fubao Yang, and Jiping Huang

Phys. Rev. E 101, 022119 (2020) - Published 18 February, 2020

Tricritical directed percolation with long-range interaction in one and two dimensions

Minjae Jo and B. Kahng

Phys. Rev. E 101, 022121 (2020) - Published 18 February, 2020

Statistical analysis of stochastic magnetic fields

Amir Jafari, Ethan Vishniac, and Vignesh Vaikundaraman

Phys. Rev. E 101, 022122 (2020) - Published 18 February, 2020

Defining velocities for accurate kinetic statistics in the Grønbech-Jensen Farago thermostat

Niels Grønbech-Jensen and Oded Farago

Phys. Rev. E 101, 022123 (2020) - Published 18 February, 2020

Critical properties of the Ising model in hyperbolic space

Nikolas P. Breuckmann, Benedikt Placke, and Ananda Roy

Phys. Rev. E 101, 022124 (2020) - Published 20 February, 2020

Aging effects on thermal conductivity of glass-forming liquids

Pranab Jyoti Bhuyan, Rituparno Mandal, Pinaki Chaudhuri, Abhishek Dhar, and Chandan Dasgupta

Phys. Rev. E 101, 022125 (2020) - Published 21 February, 2020

Finite-time quantum Otto engine: Surpassing the quasistatic efficiency due to friction

Sangyun Lee, Meesoon Ha, Jong-Min Park, and Hawoong Jeong

Phys. Rev. E 101, 022127 (2020) - Published 24 February, 2020

Dynamic phase transition in the contact process with spatial disorder: Griffiths phase and complex persistence exponents

Priyanka D. Bhoyar and Prashant M. Gade

Phys. Rev. E 101, 022128 (2020) - Published 24 February, 2020

Unified formalism for entropy production and fluctuation relations

Ying-Jen Yang and Hong Qian

Phys. Rev. E 101, 022129 (2020) - Published 25 February, 2020

Efficiency of one-dimensional active transport conditioned on motility

F. Cagnetta and E. Mallmin

Phys. Rev. E 101, 022130 (2020) - Published 26 February, 2020

Monte Carlo static and dynamic simulations of a three-dimensional Ising critical model

Frédéric Livet

Phys. Rev. E 101, 022131 (2020) - Published 27 February, 2020

Fluctuations and self-averaging in random trapping transport: The diffusion coefficient

K. A. Pronin

Phys. Rev. E 101, 022132 (2020) - Published 27 February, 2020

Monitoring anharmonic phonon transport across interfaces in one-dimensional lattice chains

Jun Fang, Xin Qian, C. Y. Zhao, Baowen Li, and Xiaokun Gu

Phys. Rev. E 101, 022133 (2020) - Published 27 February, 2020

Point processes with Gaussian boson sampling

Soran Jahangiri, Juan Miguel Arrazola, Nicolás Quesada, and Nathan Killoran

Phys. Rev. E 101, 022134 (2020) - Published 28 February, 2020

Quenched and annealed disorder mechanisms in comb models with fractional operators

A. A. Tateishi, H. V. Ribeiro, T. Sandev, I. Petreska, and E. K. Lenzi

Phys. Rev. E 101, 022135 (2020) - Published 28 February, 2020

Nonlinear Dynamics and Chaos

Wave scattering properties of multiple weakly coupled complex systems

Shukai Ma, Bo Xiao, Zachary Drikas, Bisrat Addissie, Ronald Hong, Thomas M. Antonsen, Edward Ott, and Steven M. Anlage

Phys. Rev. E 101, 022201 (2020) - Published 3 February, 2020

Slow diffusive structure in Nikolaevskii turbulence

Takayuki Narumi and Yoshiki Hidaka

Phys. Rev. E 101, 022202 (2020) - Published 3 February, 2020

Turing patterns in a network-reduced FitzHugh-Nagumo model

Timoteo Carletti and Hiroya Nakao

Phys. Rev. E 101, 022203 (2020) - Published 10 February, 2020

Dynamical complexity measure to distinguish organized from disorganized dynamics

Christophe Letellier, I. Leyva, and I. Sendiña-Nadal

Phys. Rev. E 101, 022204 (2020) - Published 10 February, 2020

Positive and negative couplings perform complementary roles in the signal amplification of globally coupled bistable oscillators

Xiaoming Liang, Cong Liu, and Xiyun Zhang

Phys. Rev. E 101, 022205 (2020) - Published 10 February, 2020

Evidence for crisis-induced intermittency during geomagnetic superchron transitions

Breno Raphaldini, David Ciro, Everton S. Medeiros, Lucas Massaroppe, and Ricardo I. F. Trindade

Phys. Rev. E 101, 022206 (2020) - Published 12 February, 2020

Nonchaotic laser pulse dissociation through deformed tori

Emanuel F. de Lima, R. Egydio de Carvalho, and M. D. Forlevesi

Phys. Rev. E 101, 022207 (2020) - Published 13 February, 2020

Lagrangian descriptors for open maps

Gabriel G. Carlo and F. Borondo

Phys. Rev. E 101, 022208 (2020) - Published 14 February, 2020

Solitons in fluctuating hydrodynamics of diffusive processes

Alexios P. Polychronakos

Phys. Rev. E 101, 022209 (2020) - Published 14 February, 2020

Origin of amplitude synchronization in coupled nonidentical oscillators

Qi Qiu, Benzheng Zhou, Pai Wang, Ligang He, Yunhao Xiao, Zhenyu Yang, and Meng Zhan

Phys. Rev. E 101, 022210 (2020) - Published 18 February, 2020

Bose-Einstein condensate confined in a one-dimensional ring stirred with a rotating delta link

Axel Pérez-Obiol and Taksu Cheon

Phys. Rev. E 101, 022212 (2020) - Published 18 February, 2020

Excitable solitons: Annihilation, crossover, and nucleation of pulses in mass-conserving activator-inhibitor media

Arik Yochelis, Carsten Beta, and Nir S. Gov

Phys. Rev. E 101, 022213 (2020) - Published 19 February, 2020

Acoustic response for nonlinear, coupled multiscale model containing subwavelength designed microstructure instabilities

Stephanie G. Konarski, Michael R. Haberman, and Mark F. Hamilton

Phys. Rev. E 101, 022215 (2020) - Published 19 February, 2020

Echo in complex networks

Richa Phogat, Sudeshna Sinha, and P. Parmananda

Phys. Rev. E 101, 022216 (2020) - Published 21 February, 2020

Finite-range Coulomb gas models. I. Some analytical results

Akhilesh Pandey, Avanish Kumar, and Sanjay Puri

Phys. Rev. E 101, 022217 (2020) - Published 24 February, 2020

Finite-range Coulomb gas models. II. Applications to quantum kicked rotors and banded random matrices

Avanish Kumar, Akhilesh Pandey, and Sanjay Puri

Phys. Rev. E 101, 022218 (2020) - Published 24 February, 2020

Neural network approach for the dynamics on the normally hyperbolic invariant manifold of periodically driven systems

Martin Tschöpe, Matthias Feldmaier, Jörg Main, and Rigoberto Hernandez

Phys. Rev. E 101, 022219 (2020) - Published 24 February, 2020

Phase-amplitude reduction far beyond the weakly perturbed paradigm

Dan Wilson

Phys. Rev. E 101, 022220 (2020) - Published 25 February, 2020

Entanglement in coupled kicked tops with chaotic dynamics

Tabea Herrmann, Maximilian F. I. Kieler, Felix Fritzsch, and Arnd Bäcker

Phys. Rev. E 101, 022221 (2020) - Published 27 February, 2020

Distribution of the ratio of consecutive level spacings for different symmetries and degrees of chaos

Ángel L. Corps and Armando Relaño

Phys. Rev. E 101, 022222 (2020) - Published 28 February, 2020

Uncertainty quantification of sensitivities of time-average quantities in chaotic systems

Kyriakos D. Kantarakias, Karim Shawki, and George Papadakis

Phys. Rev. E 101, 022223 (2020) - Published 28 February, 2020

Networks and Complex Systems

Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence

Johannes Zierenberg, Jens Wilting, Viola Priesemann, and Anna Levina

Phys. Rev. E 101, 022301 (2020) - Published 3 February, 2020

Reduction of oscillator dynamics on complex networks to dynamics on complete graphs through virtual frequencies

Jian Gao and Konstantinos Efstathiou

Phys. Rev. E 101, 022302 (2020) - Published 10 February, 2020

Dynamic regulation of resource transport induces criticality in interdependent networks of excitable units

Yogesh S. Virkar, Juan G. Restrepo, Woodrow L. Shew, and Edward Ott

Phys. Rev. E 101, 022303 (2020) - Published 11 February, 2020

Resilience centrality in complex networks

Yongtao Zhang, Cunqi Shao, Shibo He, and Jianxi Gao

Phys. Rev. E 101, 022304 (2020) - Published 11 February, 2020

Adaptive voter model on simplicial complexes

Leonhard Horstmeyer and Christian Kuehn

Phys. Rev. E 101, 022305 (2020) - Published 12 February, 2020

Norm violation versus punishment risk in a social model of corruption

Dan Lu, F. Bauza, D. Soriano-Paños, J. Gómez-Gardeñes, and L. M. Floría

Phys. Rev. E 101, 022306 (2020) - Published 13 February, 2020

Noncooperative dynamics in election interference

David Rushing Dewhurst, Christopher M. Danforth, and Peter Sheridan Dodds

Phys. Rev. E 101, 022307 (2020) - Published 19 February, 2020

Random walks on hypergraphs

Timoteo Carletti, Federico Battiston, Giulia Cencetti, and Duccio Fanelli

Phys. Rev. E 101, 022308 (2020) - Published 18 February, 2020

Time-invariant degree growth in preferential attachment network models

Jun Sun (孙骏), Matúš Medo, and Steffen Staab

Phys. Rev. E 101, 022309 (2020) - Published 18 February, 2020

Effect of repulsive links on frustration in attractively coupled networks

Sayantan Nag Chowdhury, Dibakar Ghosh, and Chittaranjan Hens

Phys. Rev. E 101, 022310 (2020) - Published 18 February, 2020

Nonmassive immunization to contain spreading on complex networks

Guilherme S. Costa and Silvio C. Ferreira

Phys. Rev. E 101, 022311 (2020) - Published 19 February, 2020

Model for phonetic changes driven by social interactions

A. Chacoma, N. Almeira, J. I. Perotti, and O. V. Billoni

Phys. Rev. E 101, 022312 (2020) - Published 19 February, 2020

Distance distribution in extreme modular networks

Eitan E. Asher, Hillel Sanhedrai, Nagendra K. Panduranga, Reuven Cohen, and Shlomo Havlin

Phys. Rev. E 101, 022313 (2020) - Published 21 February, 2020

Asymmetric interdependent networks with multiple-dependence relation

Hang Zhang, Jie Zhou, Yong Zou, Ming Tang, Gaoxi Xiao, and H. Eugene Stanley

Phys. Rev. E 101, 022314 (2020) - Published 24 February, 2020

Scale-free networks with invariable diameter and density feature: Counterexamples

Fei Ma, Xiaomin Wang, and Ping Wang

Phys. Rev. E 101, 022315 (2020) - Published 25 February, 2020

Interconnections between networks acting like an external field in a first-order percolation transition

Bnaya Gross, Hillel Sanhedrai, Louis Shekhtman, and Shlomo Havlin

Phys. Rev. E 101, 022316 (2020) - Published 28 February, 2020

Biological Physics

Unification of cell division control strategies through continuous rate models

César Nieto, Juan Arias-Castro, Carlos Sánchez, César Vargas-García, and Juan Manuel Pedraza

Phys. Rev. E 101, 022401 (2020) - Published 3 February, 2020

Mechanosensitive self-assembly of myosin II minifilaments

Justin Grewe and Ulrich S. Schwarz

Phys. Rev. E 101, 022402 (2020) - Published 5 February, 2020

Mechanics of human brain organoids

Valentina Balbi, Michel Destrade, and Alain Goriely

Phys. Rev. E 101, 022403 (2020) - Published 6 February, 2020

Motility and morphodynamics of confined cells

Ido Lavi, Nicolas Meunier, Raphael Voituriez, and Jaume Casademunt

Phys. Rev. E 101, 022404 (2020) - Published 6 February, 2020

Translational nucleosome positioning: A computational study

J. Neipel, G. Brandani, and H. Schiessel

Phys. Rev. E 101, 022405 (2020) - Published 10 February, 2020

How to predict the positions of nucleosomes on DNA is an important problem. The authors show that a simple coarse-grained model of DNA is unable to account for all aspects of the positioning, and they propose a model that assumes the elasticity of DNA changes when it is part of the nucleosome. The new approach shows excellent agreement with previously published experimental work.

Heat of nervous conduction: A thermodynamic framework

Aymar C. L. de Lichtervelde, J. Pedro de Souza, and Martin Z. Bazant

Phys. Rev. E 101, 022406 (2020) - Published 10 February, 2020

Coherent feed-forward loop acts as an efficient information transmitting motif

Md Sorique Aziz Momin, Ayan Biswas, and Suman K. Banik

Phys. Rev. E 101, 022407 (2020) - Published 11 February, 2020

Columnar grouping preserves synchronization in neuronal networks with distance-dependent time delays

Joseph S. Tumulty, Michael Royster, and Luis Cruz

Phys. Rev. E 101, 022408 (2020) - Published 14 February, 2020

Molecular-memory-driven phenotypic switching in a genetic toggle switch without cooperative binding

Baohua Qiu, Tianshou Zhou, and Jiajun Zhang

Phys. Rev. E 101, 022409 (2020) - Published 14 February, 2020

Selectivity mechanism of magnesium and calcium in cation-binding pocket structures of phosphotyrosine

Yusong Tu, Huadong Liu, Guosheng Shi, Fengmin Zhang, Tian Su, Yuanyan Wu, Jiajia Sun, Lei Zhang, Shengli Zhang, and Haiping Fang

Phys. Rev. E 101, 022410 (2020) - Published 14 February, 2020

Brain-wave equation incorporating axodendritic connectivity

James Ross, Michelle Margetts, Ingo Bojak, Rachel Nicks, Daniele Avitabile, and Stephen Coombes

Phys. Rev. E 101, 022411 (2020) - Published 18 February, 2020

Modeling the impacts of a simple meiotic gene drive on small, homeostatic populations

Kevin R. Pilkiewicz and Michael L. Mayo

Phys. Rev. E 101, 022412 (2020) - Published 18 February, 2020

Finite-size scaling analysis of protein droplet formation

Daniel Nilsson and Anders Irbäck

Phys. Rev. E 101, 022413 (2020) - Published 18 February, 2020

Pattern localization to a domain edge

Manon C. Wigbers, Fridtjof Brauns, Tobias Hermann, and Erwin Frey

Phys. Rev. E 101, 022414 (2020) - Published 18 February, 2020

This paper uses a reaction–diffusion model to explain the formation of protein patterns in heterogeneous conditions, for example inside cells. The authors propose an explanation of how proteins collect at domain edges in the environment based on a local mass redistribution that does not occur in homogeneous systems.

Kinetic proofreading and the limits of thermodynamic uncertainty

William D. Piñeros and Tsvi Tlusty

Phys. Rev. E 101, 022415 (2020) - Published 24 February, 2020

Motility and phototaxis of Gonium, the simplest differentiated colonial alga

Hélène de Maleprade, Frédéric Moisy, Takuji Ishikawa, and Raymond E. Goldstein

Phys. Rev. E 101, 022416 (2020) - Published 24 February, 2020

Symmetry of membrane protein polyhedra with heterogeneous protein size

Mingyuan Ma, Di Li, Osman Kahraman, and Christoph A. Haselwandter

Phys. Rev. E 101, 022417 (2020) - Published 24 February, 2020

Membrane protein polyhedral nanoparticles (MPPNs) are two-dimensional assemblies of proteins and lipids that form closed lipid bilayer vesicles. This paper describes a minimal molecular model, similar to one used for viral capsids, that successfully predicts MPPNs to be found in regular shapes, such as snub cubes, even if the protein sizes are heterogeneous.

Timing effciency in small-RNA-regulated post-transcriptional processes

Kuheli Biswas and Anandamohan Ghosh

Phys. Rev. E 101, 022418 (2020) - Published 26 February, 2020

One-dimensional model for chemotaxis with hard-core interactions

Tertius Ralph, Stephen W. Taylor, and Maria Bruna

Phys. Rev. E 101, 022419 (2020) - Published 28 February, 2020

Intrinsically disordered nuclear pore proteins show ideal-polymer morphologies and dynamics

Luke K. Davis, Ian J. Ford, Anđela Šarić, and Bart W. Hoogenboom

Phys. Rev. E 101, 022420 (2020) - Published 28 February, 2020

Polymers

Kinetic model of two-monomer polymerization

Anna C. Nelson, James P. Keener, and Aaron L. Fogelson

Phys. Rev. E 101, 022501 (2020) - Published 4 February, 2020

Identifying knot types of polymer conformations by machine learning

Olafs Vandans, Kaiyuan Yang, Zhongtao Wu, and Liang Dai

Phys. Rev. E 101, 022502 (2020) - Published 11 February, 2020

Identifying if two knots are similar is an open problem that cuts across several disciplines from mathematics to physical sciences; the main challenge is that the knot type is a global property that cannot be determined by looking only locally. In this paper, the authors apply supervised learning techniques to the knot recognition problem in polymers, showing what artificial neural networks can do to address it.

Characterization of entanglements in glassy polymeric ensembles using the Gaussian linking number

Rasool Ahmad, Saptarshi Paul, and Sumit Basu

Phys. Rev. E 101, 022503 (2020) - Published 14 February, 2020

Molecular chains under tension: Thermal and mechanical activation of statistically interacting extension and contraction particles

Aaron C. Meyer, Yahya Öz, Norman Gundlach, Michael Karbach, Ping Lu, and Gerhard Müller

Phys. Rev. E 101, 022504 (2020) - Published 18 February, 2020

Colloids, Complex Fluids, and Active Matter

Controlling the transport of active matter in disordered lattices of asymmetrical obstacles

A. D. Borba, Jorge L. C. Domingos, E. C. B. Moraes, F. Q. Potiguar, and W. P. Ferreira

Phys. Rev. E 101, 022601 (2020) - Published 4 February, 2020

From scalar to polar active matter: Connecting simulations with mean-field theory

Ashreya Jayaram, Andreas Fischer, and Thomas Speck

Phys. Rev. E 101, 022602 (2020) - Published 6 February, 2020

Robust boundary flow in chiral active fluid

Xiang Yang, Chenyang Ren, Kangjun Cheng, and H. P. Zhang

Phys. Rev. E 101, 022603 (2020) - Published 10 February, 2020

Dynamics of a ratchet gear powered by an active granular bath

Michael Jade Y. Jerez, Mike A. Bonachita, and Mark Nolan P. Confesor

Phys. Rev. E 101, 022604 (2020) - Published 11 February, 2020

Response of glassy liquids to thermal gradients

Vinay Vaibhav, Jürgen Horbach, and Pinaki Chaudhuri

Phys. Rev. E 101, 022605 (2020) - Published 14 February, 2020

Phase separation in a two-dimensional binary colloidal mixture by quorum sensing activity

Jalim Singh and A. V. Anil Kumar

Phys. Rev. E 101, 022606 (2020) - Published 14 February, 2020

Depletion force between disordered linear macromolecules

Nathaniel Rupprecht and Dervis Can Vural

Phys. Rev. E 101, 022607 (2020) - Published 18 February, 2020

Two-dimensional active motion

Francisco J. Sevilla

Phys. Rev. E 101, 022608 (2020) - Published 18 February, 2020

Condensate formation and multiscale dynamics in two-dimensional active suspensions

Moritz Linkmann, M. Cristina Marchetti, Guido Boffetta, and Bruno Eckhardt

Phys. Rev. E 101, 022609 (2020) - Published 19 February, 2020

Steady state of an active Brownian particle in a two-dimensional harmonic trap

Kanaya Malakar, Arghya Das, Anupam Kundu, K. Vijay Kumar, and Abhishek Dhar

Phys. Rev. E 101, 022610 (2020) - Published 24 February, 2020

Seeding approach to nucleation in the NVT ensemble: The case of bubble cavitation in overstretched Lennard Jones fluids

P. Rosales-Pelaez, I. Sanchez-Burgos, C. Valeriani, C. Vega, and E. Sanz

Phys. Rev. E 101, 022611 (2020) - Published 25 February, 2020

Clustering of bacteria with heterogeneous motility

T. Vourc'h, J. Léopoldès, and H. Peerhossaini

Phys. Rev. E 101, 022612 (2020) - Published 26 February, 2020

Synchronization of active rotators interacting with environment

Taegeun Song, Heetae Kim, Seung-Woo Son, and Junghyo Jo

Phys. Rev. E 101, 022613 (2020) - Published 27 February, 2020

Liquid Crystals

Spontaneous helical flows in active nematics lying on a cylindrical surface

Gaetano Napoli and Stefano Turzi

Phys. Rev. E 101, 022701 (2020) - Published 6 February, 2020

Negative viscosity of liquid crystals in the presence of turbulence: Conductivity dependence, phase diagram, and self-oscillation

Fumiaki Kobayashi, Yuji Sasaki, Shuji Fujii, Hiroshi Orihara, and Tomoyuki Nagaya

Phys. Rev. E 101, 022702 (2020) - Published 10 February, 2020

Fine structure of viral dsDNA encapsidation

Shawn Walker, Javier Arsuaga, Lindsey Hiltner, M. Carme Calderer, and Mariel Vázquez

Phys. Rev. E 101, 022703 (2020) - Published 18 February, 2020

Q-tensor model of twist-bend and splay nematic phases

Martin Čopič and Alenka Mertelj

Phys. Rev. E 101, 022704 (2020) - Published 25 February, 2020

Free volume in the smectic-E phase of 4-hexyl-4′ isothiocyanatobiphenyl studied by positron annihilation spectroscopy

E. Dryzek, E. Juszyńska-Gałązka, R. Zaleski, B. Jasińska, and M. E. S. Eusébio

Phys. Rev. E 101, 022705 (2020) - Published 26 February, 2020

Tailored morphologies in two-dimensional ferronematic wells

Konark Bisht, Yiwei Wang, Varsha Banerjee, and Apala Majumdar

Phys. Rev. E 101, 022706 (2020) - Published 28 February, 2020

Films and Interfaces

Interaction of advancing contact lines with defects on heated substrates

Vladimir S. Ajaev, Elizaveta Ya. Gatapova, and Oleg A. Kabov

Phys. Rev. E 101, 022801 (2020) - Published 18 February, 2020

Phase-field model of oxidation: Kinetics

Kyoungdoc Kim, Quentin C. Sherman, Larry K. Aagesen, and Peter W. Voorhees

Phys. Rev. E 101, 022802 (2020) - Published 24 February, 2020

Extended families of critical and stationary droplets for nonequilibrium phase transitions in spatially discrete bistable systems

Chi-Jen Wang, Da-Jiang Liu, and James W. Evans

Phys. Rev. E 101, 022803 (2020) - Published 28 February, 2020

Granular Materials

Granular flow through an aperture: Influence of obstacles near the outlet

M. G. Areán, A. Boschan, M. A. Cachile, and M. A. Aguirre

Phys. Rev. E 101, 022901 (2020) - Published 5 February, 2020

Dynamic behavior of humid granular avalanches: Optical measurements to characterize the precursor activity

Luc Oger, Claude el Tannoury, Renaud Delannay, Yves Le Gonidec, Irene Ippolito, Yanina Lucrecia Roht, and Iñaki Gómez-Arriaran

Phys. Rev. E 101, 022902 (2020) - Published 10 February, 2020

Size-polydisperse dust in molecular gas: Energy equipartition versus nonequipartition

Alexander Osinsky, Anna S. Bodrova, and Nikolai V. Brilliantov

Phys. Rev. E 101, 022903 (2020) - Published 19 February, 2020

Optical method for measuring the volume fraction of granular media: Application to faced-centered cubic lattices of monodisperse spheres

L. Sarno, L. Carleo, M. N. Papa, and A. Armanini

Phys. Rev. E 101, 022904 (2020) - Published 28 February, 2020

Solid Mechanics

Influence of the microstructure of two-dimensional random heterogeneous media on propagation of acoustic coherent waves

Adrien Rohfritsch, Jean-Marc Conoir, Tony Valier-Brasier, and Régis Marchiano

Phys. Rev. E 101, 023001 (2020) - Published 12 February, 2020

Generation of fine fragments during dynamic propagation of pressurized cracks

A. Iravani, F. Ouchterlony, I. Kukolj, and J. A. Åström

Phys. Rev. E 101, 023002 (2020) - Published 24 February, 2020

Fluid Dynamics

Knudsen number effects on the nonlinear acoustic spectral energy cascade

Shubham Thirani, Prateek Gupta, and Carlo Scalo

Phys. Rev. E 101, 023101 (2020) - Published 3 February, 2020

Behavior of charged and uncharged drops in high alternating tangential electric fields

Jens-Michael Löwe, Volker Hinrichsen, Ilia V. Roisman, and Cameron Tropea

Phys. Rev. E 101, 023102 (2020) - Published 4 February, 2020

Transition to turbulence in driven active matter

Aritra Das, J. K. Bhattacharjee, and T. R. Kirkpatrick

Phys. Rev. E 101, 023103 (2020) - Published 5 February, 2020

Flexible fibers in shear flow approach attracting periodic solutions

Agnieszka M. Słowicka, Howard A. Stone, and Maria L. Ekiel-Jeżewska

Phys. Rev. E 101, 023104 (2020) - Published 6 February, 2020

Numerical simulation of dissolved air flotation using a lattice Boltzmann method

Amirabbas Ghorbanpour-Arani, Mohammad-Hassan Rahimian, and Reza Haghani-Hassan-Abadi

Phys. Rev. E 101, 023105 (2020) - Published 6 February, 2020

General power-law temporal scaling for unequal-size microbubble coalescence

Rou Chen, Huidan (Whitney) Yu, Jianhuan Zeng, and Likun Zhu

Phys. Rev. E 101, 023106 (2020) - Published 10 February, 2020

Theory of acoustic trapping of microparticles in capillary tubes

Jacob S. Bach and Henrik Bruus

Phys. Rev. E 101, 023107 (2020) - Published 20 February, 2020

Coupling effects and thin-shell corrections for surface instabilities of cylindrical fluid shells

Shuai Zhang, Hao Liu, Wei Kang, Zuoli Xiao, Jianjun Tao, Ping Zhang, Weiyan Zhang, and X. T. He

Phys. Rev. E 101, 023108 (2020) - Published 25 February, 2020

Bicritical states in a vertical layer of fluid under two-frequency temperature modulation

Jitender Singh, Puneet Kaur, and Renu Bajaj

Phys. Rev. E 101, 023109 (2020) - Published 26 February, 2020

Local details versus effective medium approximation: A study of diffusion in microfluidic random networks made from Voronoi tessellations

Washington Ponce and María Luisa Cordero

Phys. Rev. E 101, 023110 (2020) - Published 26 February, 2020

Plasma Physics

Structure of multicomponent Coulomb crystals

M. E. Caplan

Phys. Rev. E 101, 023201 (2020) - Published 6 February, 2020

Studies of equation of state properties of high-energy-density matter generated by intense ion beams at the facility for antiprotons and ion research

N. A. Tahir, P. Neumayer, I. V. Lomonosov, A. Shutov, V. Bagnoud, A. R. Piriz, S. A. Piriz, and C. Deutsch

Phys. Rev. E 101, 023202 (2020) - Published 6 February, 2020

Third-order transport coefficient tensor of charged-particle swarms in electric and magnetic fields

I. Simonović, D. Bošnjaković, Z. Lj. Petrović, P. Stokes, R. D. White, and S. Dujko

Phys. Rev. E 101, 023203 (2020) - Published 10 February, 2020

Measurements of pressure-induced Kβ line shifts in ramp compressed cobalt up to 8 Mbar

S. Jiang, A. E. Lazicki, S. B. Hansen, P. A. Sterne, P. Grabowski, R. Shepherd, H. A. Scott, R. F. Smith, J. H. Eggert, and Y. Ping

Phys. Rev. E 101, 023204 (2020) - Published 14 February, 2020

Role of collisionality and radiative cooling in supersonic plasma jet collisions of different materials

G. W. Collins, IV, J. C. Valenzuela, C. A. Speliotopoulos, N. Aybar, F. Conti, F. N. Beg, P. Tzeferacos, B. Khiar, A. F. A. Bott, and G. Gregori

Phys. Rev. E 101, 023205 (2020) - Published 14 February, 2020

Electron-ion coupling factor for temperature relaxation in dense plasmas

Gérald Faussurier

Phys. Rev. E 101, 023206 (2020) - Published 18 February, 2020

Sculpted ultracold neutral plasmas

Vikram S. Dharodi and Michael S. Murillo

Phys. Rev. E 101, 023207 (2020) - Published 19 February, 2020

Diagnostic signature of the compressibility of the inertial-confinement-fusion pusher

K. D. Meaney, Y. H. Kim, H. Geppert-Kleinrath, H. W. Herrmann, L. Berzak Hopkins, and N. M. Hoffman

Phys. Rev. E 101, 023208 (2020) - Published 19 February, 2020

Nonlinear plasma wavelength scalings in a laser wakefield accelerator

H. Ding, A. Döpp, M. Gilljohann, J. Götzfried, S. Schindler, L. Wildgruber, G. Cheung, S. M. Hooker, and S. Karsch

Phys. Rev. E 101, 023209 (2020) - Published 24 February, 2020

Single to multiple acoustic vortex excitations in the transition to defect-mediated dust acoustic wave turbulence

Jun-Yi Tsai, Po-Cheng Lin, and Lin I

Phys. Rev. E 101, 023210 (2020) - Published 25 February, 2020

Towards megajoule x-ray lasers via relativistic four-photon cascade in plasma

V. M. Malkin and N. J. Fisch

Phys. Rev. E 101, 023211 (2020) - Published 26 February, 2020

Computational Physics

Using numerical methods from nonlocal optics to simulate the dynamics of N-body systems in alternative theories of gravity

Tiago D. Ferreira, Nuno A. Silva, O. Bertolami, C. Gomes, and A. Guerreiro

Phys. Rev. E 101, 023301 (2020) - Published 3 February, 2020

Benchmarking the effective one-component plasma model for warm dense neon and krypton within quantum molecular dynamics simulation

Zhao-Qi Wang, Jun Tang, Yong Hou, Qi-Feng Chen, Xiang-Rong Chen, Jia-Yu Dai, Xu-Jun Meng, Yun-Jun Gu, Lei Liu, Guo-Jun Li, Yang-Shun Lan, and Zhi-Guo Li

Phys. Rev. E 101, 023302 (2020) - Published 4 February, 2020

Construction of invariant compact finite-difference schemes

E. Ozbenli and P. Vedula

Phys. Rev. E 101, 023303 (2020) - Published 10 February, 2020

Asymptotically unbiased estimation of physical observables with neural samplers

Kim A. Nicoli, Shinichi Nakajima, Nils Strodthoff, Wojciech Samek, Klaus-Robert Müller, and Pan Kessel

Phys. Rev. E 101, 023304 (2020) - Published 10 February, 2020

Super-resolution of real-world rock microcomputed tomography images using cycle-consistent generative adversarial networks

Honggang Chen, Xiaohai He, Qizhi Teng, Raymond E. Sheriff, Junxi Feng, and Shuhua Xiong

Phys. Rev. E 101, 023305 (2020) - Published 11 February, 2020

Discrete unified gas kinetic scheme for nonlinear convection-diffusion equations

Jinlong Shang, Zhenhua Chai, Huili Wang, and Baochang Shi

Phys. Rev. E 101, 023306 (2020) - Published 14 February, 2020

Arbitrary Lagrangian-Eulerian unstructured finite-volume lattice-Boltzmann method for computing two-dimensional compressible inviscid flows over moving bodies

Kazem Hejranfar, Hossein Hashemi Nasab, and Mohammad Hadi Azampour

Phys. Rev. E 101, 023308 (2020) - Published 18 February, 2020

Multigrid dual-time-stepping lattice Boltzmann method

Simon Gsell, Umberto D'Ortona, and Julien Favier

Phys. Rev. E 101, 023309 (2020) - Published 18 February, 2020

Covariant Bethe-Salpeter approximation in models of strongly correlated electron systems

Zhenhao Fan, Zhipeng Sun, Dingping Li, Itzhak Berenstein, Guy Leshem, and Baruch Rosenstein

Phys. Rev. E 101, 023310 (2020) - Published 20 February, 2020

Semi-Lagrangian lattice Boltzmann model for compressible flows on unstructured meshes

M. H. Saadat, F. Bösch, and I. V. Karlin

Phys. Rev. E 101, 023311 (2020) - Published 24 February, 2020

Analysis and assessment of the no-slip and slip boundary conditions for the discrete unified gas kinetic scheme

Liuming Yang, Yang Yu, Liming Yang, and Guoxiang Hou

Phys. Rev. E 101, 023312 (2020) - Published 21 February, 2020

Simulation of a hydrogen atom in a laser field using the time-dependent variational principle

Keefer Rowan, Louis Schatzki, Timothy Zaklama, Yasumitsu Suzuki, Kazuyuki Watanabe, and Kálmán Varga

Phys. Rev. E 101, 023313 (2020) - Published 25 February, 2020

Axisymmetric lattice Boltzmann model for simulating the freezing process of a sessile water droplet with volume change

Chaoyang Zhang, Hui Zhang, Wenzhen Fang, Yugang Zhao, and Chun Yang

Phys. Rev. E 101, 023314 (2020) - Published 26 February, 2020

High-resolution Monte Carlo study of the order-parameter distribution of the three-dimensional Ising model

Jiahao Xu, Alan M. Ferrenberg, and David P. Landau

Phys. Rev. E 101, 023315 (2020) - Published 26 February, 2020

Computational hardness of spin-glass problems with tile-planted solutions

Dilina Perera, Firas Hamze, Jack Raymond, Martin Weigel, and Helmut G. Katzgraber

Phys. Rev. E 101, 023316 (2020) - Published 28 February, 2020

ERRATA

Erratum: Bifurcation threshold of the delayed van der Pol oscillator under stochastic modulation [Phys. Rev. E 85, 056214 (2012)]

Mathieu Gaudreault, François Drolet, and Jorge Viñals

Phys. Rev. E 101, 029901 (2020) - Published 11 February, 2020

Erratum: Configurational temperature in dusty plasmas [Phys. Rev. E 99, 063203 (2019)]

Michael Himpel and André Melzer

Phys. Rev. E 101, 029902 (2020) - Published 18 February, 2020

Erratum: Subdiffusive continuous-time random walks with stochastic resetting [Phys. Rev. E 99, 052116 (2019)]

Łukasz Kuśmierz and Ewa Gudowska-Nowak

Phys. Rev. E 101, 029904 (2020) - Published 26 February, 2020

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