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Anomalous scaling in an age-dependent branching model
Phys. Rev. E 91, 022803 – Published 2 February, 2015
DOI: https://doi.org/10.1103/PhysRevE.91.022803
Abstract
We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age as . Depending on the exponent , the scaling of tree depth with tree size displays a transition between the logarithmic scaling of random trees and an algebraic growth. At the transition tree depth grows as . This anomalous scaling is in good agreement with the trend observed in evolution of biological species, thus providing a theoretical support for age-dependent speciation and associating it to the occurrence of a critical point.
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References (44)
- I. Rodriguez-Iturbe and A. Rinaldo, Fractal River Basins: Chance and Self-Organization (Cambridge University Press, Cambridge, 1997).
- G. B. West, J. H. Brown, and B. J. Enquist, Science 276, 122 (1997).
- T. Halpin-Healy and Y.-C. Zhang, Phys. Rep. 254, 215 (1995).
- E. Brunet, B. Derrida, and D. Simon, Phys. Rev. E 78, 061102 (2008).
- K. Klemm, V. M. Eguíluz, and M. San Miguel, Phys. Rev. Lett. 95, 128701 (2005).
- K. Klemm, V. M. Eguíluz, and M. San Miguel, Physica D 224, 149 (2006).
- M. M. Geipel, C. J. Tessone, and F. Schweitzer, Eur. Phys. J. B 71, 641 (2009).
- R. Gray and Q. Atkinson, Nature (London) 426, 435 (2003).
- B. Derrida, S. C. Manrubia, and D. H. Zanette, Phys. Rev. Lett. 82, 1987 (1999).
- M. Serva, J. Stat. Mech. (2005) P07011.
- E. A. Herrada, C. J. Tessone, K. Klemm, V. M. Eguíluz, E. Hernández-García, and C. M. Duarte, PLoS ONE 3, e2757 (2008).
- A. Herrada, V. M. Eguíluz, E. Hernández-García, and C. M. Duarte, BMC Evol. Biol. 11, 155 (2011).
- E. Brunet and B. Derrida, J. Stat. Mech. (2013) P01006.
- V. Sood, M. Mathieu, A. Shreim, P. Grassberger, and M. Paczuski, Phys. Rev. Lett. 105, 178701 (2010).
- J. Felsenstein, Inferring Phylogenies (Sinauer Associates, Sunderland, MA, 2003).
- M. J. Sanderson, M. J. Donoghue, W. Piel, and T. Eriksson, Am. J. Bot. 81, 183 (1994), data downloaded on June 30, 2007, http://www.treebase.org.
- S. Whelan, P. I. W. de Bakker, E. Quevillon, N. Rodriguez, and N. Goldman, Nucleic Acids Res. 34, D327 (2006), data downloaded on May 27, 2008, http://www.ebi.ac.uk/goldman-srv/pandit/.
- T. E. Harris, The Theory of Branching Processes (Springer-Verlag, Berlin, and Prentice-Hall, Englewood Cliffs, NJ, 1963).
- M. Simkin and V. Roychowdhury, Phys. Rep. 502, 1 (2011).
- I. Pinelis, Proc. R. Soc. London B 270, 1425 (2003).
- M. G. Blum and O. François, Syst. Biol. 55, 685 (2006).
- G. R. Jones, Syst. Biol. 60, 735 (2011).
- G. U. Yule, Philos. Trans. R. Soc. London B 213, 21 (1925).
- S. Pompei, V. Loreto, and F. Tria, PLoS ONE 7, e44849 (2012).
- A. Mooers and S. B. Heard, Q. Rev. Biol. 72, 31 (1997).
- F. A. Matsen, Syst. Biol. 55, 652 (2006).
- P. M. Agapow and A. Purvis, Syst. Biol. 51, 866 (2002).
- M. Sackin, Syst. Zool. 21, 225 (1972).
- M. Stich and S. C. Manrubia, Eur. Phys. J. B 70, 583 (2009).
- S. Keller-Schmidt and K. Klemm, Adv. Complex Syst. 15, 1250043 (2012).
- D. Aldous, in Random Discrete Structures, edited by D. Aldous and R. Pemantle (Springer, New York, 1996), pp. 1–18.
- D. Aldous, Stat. Sci. 16, 23 (2001).
- D. J. Ford, Ph.D. thesis, Stanford University, 2006, arXiv:math/0511246v1 [math.PR].
- J. Masel and M. L. Siegal, Trends Genet. 25, 395 (2009).
- S. Manrubia and J. A. Cuesta, J. R. Soc. Interface 12, 20141010 (2014).
- P. Sibani, M. R. Schmidt, and P. Alstrøm, Phys. Rev. Lett. 75, 2055 (1995).
- M. Newman and P. Sibani, Proc. R. Soc. London B 266, 1593 (1999).
- P. De Los Rios, Europhys. Lett. 56, 898 (2001).
- E. Hernández-García, M. Tuğrul, E. A. Herrada, V. M. Eguíluz, and K. Klemm, Int. J. Bif. Chaos 20, 805 (2010).
- N. Becker and P. Sibani, Europhys. Lett. 105, 18005 (2014).
- P. Bak and K. Sneppen, Phys. Rev. Lett. 71, 4083 (1993).
- R. V. Solé and S. C. Manrubia, Phys. Rev. E 54, R42 (1996).
- T. Barraclough and S. Nee, Trends Ecol. Evol. 16, 391 (2001).
- C. Venditti, A. Meade, and M. Pagel, Nature (London) 463, 349 (2010).