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Macroscopic model of self-propelled bacteria swarming with regular reversals
Phys. Rev. E 85, 021903 – Published 6 February, 2012
DOI: https://doi.org/10.1103/PhysRevE.85.021903
Abstract
Periodic reversals in the direction of motion in systems of self-propelled rod-shaped bacteria enable them to effectively resolve traffic jams formed during swarming and maximize the swarming rate of the colony. In this paper, a connection is established between a microscopic one-dimensional cell-based stochastic model of reversing nonoverlapping bacteria and a macroscopic nonlinear diffusion equation describing the dynamics of cellular density. Boltzmann-Matano analysis is used to determine the nonlinear diffusion equation corresponding to the specific reversal frequency. Stochastic dynamics averaged over an ensemble is shown to be in very good agreement with the numerical solutions of this nonlinear diffusion equation. Critical density is obtained such that nonlinear diffusion is dominated by the collisions between cells for the densities . An analytical approximation of the pairwise collision time and semianalytical fit for the total jam time per reversal period are also obtained. It is shown that cell populations with high reversal frequencies are able to spread out effectively at high densities. If the cells rarely reverse, then they are able to spread out at lower densities but are less efficient at spreading out at higher densities.
Article Text
References (38)
- D. Kaiser, Curr. Bio. 17, 561 (2007).
- Y. Wu, D. Kaiser, Y. Jiang, and M. Alber, PLoS Comput. Biol. 3, e253 (2007).
- A. Kaiser and C. Crosby, Cell Motility 3, 227245 (1983).
- R. Yu and D. Kaiser, Mol. Microbiol. 63, 454 (2007).
- Y. Wu, D. Kaiser, Y. Jiang, and M. Alber, Proc. Natl. Acad. Sci. USA 106, 1222 (2009).
- T. Mignot, J. Merlie, and D. Zusman, Science 310, 855 (2005).
- D. E. Whitworth, ed., Myxobacteria Multicellularity and Differentiation (ASM Press, Washington, DC, 2008).
- Y. Wu, Y. Jiang, D. Kaiser, and M. Alber, Phys. Biol. 8, 055003 (2011).
- B. D. Blackhart and D. Zusman, Proc. Natl. Acad. Sci. USA 82, 8767 (1985).
- D. Kaiser, in Myxobacteria, Multicellularity, and Differentiation, edited by D. E. Whitworth (ASM Press, Washington, DC, 2008), p. 93.
- E. M. Mauriello, T. Mignot, Z. Yang, and D. R. Zusman, Microbiol. Mol. Biol. Rev. 74, 229 (2010).
- C. W. Harvey, F. Morcos, C. R. Sweet, D. Kaiser, S. Chatterjee, X. Liu, D. Z. Chen, and M. Alber, Phys. Biol. 8, 026016 (2011).
- O. A. Igoshin, A. Mogilner, R. D. Welch, D. Kaiser, and G. Oster, Proc. Natl. Acad. Sci. USA 98, 14913 (2001).
- O. A. Igoshin and G. Oster, Math Biosci. 188, 221 (2004).
- O. A. Igoshin, R. D. Welch, D. Kaiser, and G. Oster, Proc. Natl. Acad. Sci. USA 101, 4256 (2004).
- M. S. Alber, Y. Jiang, and M. A. Kiskowski, Physica D 191, 343 (2004).
- B. V. Reddy and S. N. Khanna, Phys. Rev. Lett. 93, 068301 (2004).
- M. A. Kiskowski, Y. Jiang, and M. S. Alber, Phys. Biol. 1, 173 (2004).
- D. Kaiser, Curr. Biol. 17, R561 (2007).
- M. R. D'Orsogna, M. A. Suchard, and T. Chou, Phys. Rev. E 68, 021925 (2003).
- T. J. Newman and R. Grima, Phys. Rev. E 70, 051916 (2004).
- M. Alber, N. Chen, T. Glimm, and P. M. Lushnikov, Phys. Rev. E 73, 051901 (2006).
- M. Alber, N. Chen, P. M. Lushnikov, and S. A. Newman, Phys. Rev. Lett. 99, 168102 (2007).
- P. M. Lushnikov, N. Chen, and M. Alber, Phys. Rev. E 78, 061904 (2008).
- M. Alber, R. Gejji, and B. Kazmierczak, Appl. Math. Lett. 22, 1645 (2009).
- C. S. Patlak, Bull. Math. Biophys. 15, 311 (1953).
- E. F. Keller and L. A. Segel, J. Theor. Biol. 26, 399 (1970).
- M. P. Brenner, P. Constantin, L. P. Kadanoff, A. Schenkel, and S. C. Venkataramani, Nonlinearity 12, 1071 (1999).
- P. M. Lushnikov, Phys. Lett. A 374, 1678 (2010).
- S. Dejak, P. Lushnikov, Y. Ovchinnikov, and I. Sigal (to be published).
- P. J. Murray, C. M. Edwards, M. J. Tindall, and P. K. Maini, Phys. Rev. E 80, 031912 (2009).
- R. Welch and A. D. Kaiser, Proc. Natl. Acad. Sci. USA 98, 14907 (2001).
- M. E. Glicksman, Diffusion in Solids: Field Theory, Solid-State Principles, and Applications (Wiley, New York, 2000).
- L. D. Landau and E. M. Lifshitz, Statistical Physics, 3rd ed. (Butterworth-Heinemann, London, 1980).
- M. Nixon and A. Aguado, Feature Extraction and Image Processing (Academic Press, New York, 2008).
- C. W. Gardiner, Handbook of Stochastic Methods for Physics, Chemistry, and the Natural Sciences (Springer-Verlag, Berlin, 2004).
- P. C. Hemmer, Physica 27, 79 (1961).
- S. Ispolatov and P. L. Krapivsky, Physica A 252, 165 (1998).