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Statistical-mechanical study of evolution of robustness in noisy environments
Phys. Rev. E 80, 051919 – Published 24 November, 2009
DOI: https://doi.org/10.1103/PhysRevE.80.051919
Abstract
In biological systems, expression dynamics that can provide fitted phenotype patterns with respect to a specific function have evolved through mutations. This has been observed in the evolution of proteins for realizing folding dynamics through which a target structure is shaped. We study this evolutionary process by introducing a statistical-mechanical model of interacting spins, where a configuration of spins and their interactions represent a phenotype and genotype, respectively. The phenotype dynamics are given by a stochastic process with temperature under a Hamiltonian with . The evolution of is also stochastic with temperature and follows mutations introduced into and selection based on a fitness defined for a configuration of a given set of target spins. Below a certain temperature , the interactions that achieve the target pattern evolve, whereas another phase transition is observed at . At low temperatures , the Hamiltonian exhibits a spin-glass-like phase, where the dynamics toward the target pattern require long time steps, and the fitness often decreases drastically as a result of a single mutation to . In the intermediate-temperature region, the dynamics to shape the target pattern proceed rapidly and are robust to mutations of . The interactions in this region have no frustration around the target pattern and results in funnel-type dynamics. We propose that the ubiquity of funnel-type dynamics, as observed in protein folding, is a consequence of evolution subjected to thermal noise beyond a certain level; this also leads to mutational robustness of the fitness.
Article Text
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