Export citation

Export citation

Choose format for download:

Download Citation
  • Access by Xinjiang University

Semiflexible polymer condensates in poor solvents: Toroid versus spherical geometries

I. C. B. Miller1, M. Keentok2, G. G. Pereira2,3, and D. R. M. Williams1

  • 1Research School of Physical Sciences and Engineering, Australian National University, Canberra 0200, Australia
  • 2Department of Mechanical Engineering, University of Sydney, Sydney, 2006, Australia
  • 3MacDiarmid Institute for Advanced Materials and Nanotechnology, School of Chemical and Physical Sciences, Victoria University of Wellington, P.O. Box 600, Wellington, New Zealand

Phys. Rev. E 71, 031802 – Published 14 March, 2005

DOI: https://doi.org/10.1103/PhysRevE.71.031802

Abstract

Semiflexible polymers, such as DNA, in the presence of a condensing agent often form toroids. This is due to a balance between bending and surface area free energy penalties. Here we show why in experiments all the toroids have been found to have similar physical size. We also introduce a novel morphology, that of the hollow sphere, which is favored for long polymer chains. This offers the possibility of encapsulating material inside a “vesicle” made of semiflexible polymers. We also consider the case of many such polymer chains placed in a poor solvent. We show a transition between two morphologies occur on increasing concentration of polymer chains, from a thickened toroid to a spherical globule.

Article Text

References (24)

  1. P. G. de Gennes, Scaling Concepts in Polymer Physics (Cornell University Press, Ithaca, NY, 1979).
  2. V. A. Bloomfield, Curr. Opin. Struct. Biol. 6, 334 (1996).
  3. Yu. M. Evdokimov, T. L. Pyatigorskaya, O. F. Polyvtsev, N. M. Akimenko, V. A. Kadykov, D. Ya. Tsvankin, and Ya. M. Varshavsky, Nucleic Acids Res. 3, 2353 (1976).
  4. N. V. Hud, Biophys. J. 69, 1355 (1995).
  5. N. V. Hud, K. H. Downing, and R. Balhorn, Proc. Natl. Acad. Sci. U.S.A. 92, 3581 (1995).
  6. Y. Fang and J. H. Hoh, Nucleic Acids Res. 26, 588 (1998).
  7. U. K. Laemmli, Proc. Natl. Acad. Sci. U.S.A. 72, 4288 (1975).
  8. L. S. Lerman, Proc. Natl. Acad. Sci. U.S.A. 68, 1886 (1971).
  9. K. Minawa, Y. Matsuzawa, K. Yoshikawa, M. Doi, and A. R. Khokhlov, Biopolymers 34, 555 (1994).
  10. H. Noguchi and K. Yoshikawa, J. Chem. Phys. 109, 5070 (1998).
  11. J. Ubbink and T. Odijk, Biophys. J. 68, 54 (1995).
  12. S. Y. Park, D. Harries, and W. M. Gelbart, Biophys. J. 75, 714 (1998).
  13. G. G. Pereira and D. R. M. Williams, Biophys. J. 80, 161 (2001).
  14. V. V. Vasilevskaya, A. R. Khokhlov, Y. Matsuzawa, and K. Yoshikawa, J. Chem. Phys. 102, 6595 (1995).
  15. J. Ubbink and T. Odijk, Europhys. Lett. 33, 353 (1996).
  16. J. N. Bright and D. R. M. Williams, Europhys. Lett. 45, 321 (1999).
  17. V. V. Vasilevskaya, A. R. Khokhlov, S. Kidoaki, and K. Yoshikawa, Biopolymers 41, 51 (1997).
  18. G. G. Pereira and D. R. M. Williams, Europhys. Lett. 50, 559 (2000).
  19. V. A. Ivanov, M. R. Stukan, V. V. Vasilevskaya, W. Paul, and K. Binder, Macromol. Theory Simul. 9, 488 (2000).
  20. I. R. Cooke and D. R. M. Williams, Physica A 339, 45 (2004).
  21. R. Golestanian and T. B. Liverpool, Phys. Rev. E 62, 5488 (2000).
  22. D. R. M. Williams and G. H. Fredrickson, Macromolecules 25, 3561 (1992).
  23. C. C. Conwell, I. D. Vilfan, and N. V. Hud, Proc. Natl. Acad. Sci. U.S.A. 100, 9296 (2003).
  24. I. M. Kulic, D. Andrienko, and M. Deserno, Europhys. Lett. 67, 418 (2004).

Outline

Information

Sign In to Your Journals Account

Filter

Filter

Article Lookup

Enter a citation