Heteropolymer freezing and design: Towards physical models of protein folding

Vijay S. Pande; Alexander Yu. Grosberg; Toyoichi Tanaka

doi:10.1103/RevModPhys.72.259

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Heteropolymer freezing and design: Towards physical models of protein folding

Vijay S. Pande, Alexander Yu. Grosberg, and Toyoichi Tanaka

Vijay S. Pande

Chemistry Department, Stanford University, Stanford, California 94305-5080

Alexander Yu. Grosberg

Department of Physics, University of Minnesota, Minneapolis, Minnesota 55455

Toyoichi Tanaka

Department of Physics and Center for Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139

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Rev. Mod. Phys. 72, 259 – Published 1 January, 2000

DOI: https://doi.org/10.1103/RevModPhys.72.259

Abstract

Protein folding has become one of the most actively studied problems in modern molecular biophysics. Approaches to the problem combine ideas from the physics of disordered systems, polymer physics, and molecular biology. Much can be learned from the statistical properties of model heteropolymers, the chain molecules having different monomers in irregular sequences. Even in highly evolved proteins, there is a strong random element in the sequences, which gives rise to a statistical ensemble of sequences for a given folded shape. Simple analytic models give rise to phase transitions between random, glassy, and folded states, depending on the temperature T and the design temperature $T^{des}$ of the ensemble of sequences. Besides considering the analytic results obtainable in a random-energy model and in the Flory mean-field model of polymers, the article reports on confirming numerical simulations.

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Heteropolymer freezing and design: Towards physical models of protein folding

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