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HIGHLIGHTED ARTICLES

Unravelling Three-Dimensional Active Transport by Ciliary Arrays on Coral Surfaces

Siluvai Antony Selvan, Cesar O. Pacherres, Michael Kühl, Angus Butler, Max S. Dhillon, Linda L. Blackall, Peter W. Duck, Draga Pihler-Puzović, and Douglas R. Brumley

PRX Life 4, 023020 (2026) - Published 26 May, 2026

Experimental measurements of cilia distribution and fluid flow at the surface of reef-building coral uncover the crucial role of ciliary orientation in modulating nutrient transport.

PERSPECTIVES

How the Immune System Learns

Arup K. Chakraborty, Anupama Jayaraman, and Daniel P. Newton

PRX Life 4, 021001 (2026) - Published 13 May, 2026

This Perspective summarizes recent studies on how the humoral immune system learns to target unseen pathogen variants via feedback regulation during a limited number of antigen re-exposures, and outlines key questions at the intersection of statistical physics, machine learning, immunology, and evolutionary biology.

ARTICLES

Discretization of Blood-Based Infrared Fingerprints Reveals Biomarker-like Variables for Efficient Multi-omics Integration

Kosmas V. Kepesidis, Nico Feiler, Vasileios Papalampropoulos, Michael Trubetskov, Andreas Döpp, and Ferenc Krausz

PRX Life 4, 023001 (2026) - Published 1 April, 2026

Using zero-crossing analysis, the authors extract diagnostically relevant information from the electric-field molecular fingerprints of human blood samples and, in a clinical study, show that deviations in zero-crossing time gaps are linked to the presence and progression of lung cancer.

Noisy Dynamical Systems Evolve Error Correcting Codes and Modularity

Trevor McCourt, Ila R. Fiete, and Isaac L. Chuang

PRX Life 4, 023002 (2026) - Published 3 April, 2026

This study shows that the simultaneous presence of error correction and modularity in biological systems is a typical co-occurrence rather than a coincidence, leading them to deduce a principle of error correction-enhanced evolvability.

Ignition Criteria for Trigger Waves in Cell Signaling

Brandon H. Schlomann, William S. DeWitt, Yuanzhao Zhang, and Kasturi Shah

PRX Life 4, 023003 (2026) - Published 6 April, 2026

Employing a minimal but biochemically relevant model of trigger waves, this study obtained an analytic expression for wave ignition thresholds in cell signaling in 1D and numerical solutions in 2D and 3D.

Adaptive Ratchets and the Evolution of Molecular Complexity

Tom Röschinger, Roberto Morán-Tovar, Simone Pompei, and Michael Lässig

PRX Life 4, 023004 (2026) - Published 9 April, 2026

Molecular recognition sites evolve faster when coupled to time-dependent targets through an adaptive ratchet mechanism.

Robotectonics: Emergent Phototactic Aggregation-Disaggregation in Swarms

Fabio Giardina, S. Ganga Prasath, and L. Mahadevan

PRX Life 4, 023005 (2026) - Published 10 April, 2026

A robot collective can assemble and disassemble aggregates by altering local transport behavior, demonstrating that complex coordination can emerge from simple local rules.

Stochastic Synaptic Dynamics Under Learning

Jakob Stubenrauch, Naomi Auer, Richard Kempter, and Benjamin Lindner

PRX Life 4, 023006 (2026) - Published 13 April, 2026

A stochastic synaptic framework links spike timing to memory limits, showing how plasticity, noise, and homeostasis jointly shape learning, forgetting, and enforce a tradeoff between memory lifetime and early memory accuracy.

Adaptive Mechanical Proofreading Toward Robust yet Tunable Humoral Immunity

Qing Xu, Hongda Jiang, and Shenshen Wang

PRX Life 4, 023007 (2026) - Published 17 April, 2026

An enhanced form of mechanical proofreading during dynamic cell-cell contact helps reconcile robust clonal selection with tunable specificity in adaptive immune responses.

Probabilistic Models, Compressible Interactions, and Neural Coding

Luisa Ramirez, William Bialek, Stephanie E. Palmer, and David J. Schwab

PRX Life 4, 023008 (2026) - Published 23 April, 2026

Two conditions subextensive mutual information and compressible interactions make neural population codes learnable from finite data revealing noise correlations as essential for neural coding.

Characterizing Neural Manifolds' Properties and Curvatures using Normalizing Flows

Peter Bouss, Sandra Nestler, Kirsten Fischer, Claudia Merger, Lars Schutzeichel, Simon Musall, Alexandre René, and Moritz Helias

PRX Life 4, 023009 (2026) - Published 27 April, 2026

A normalizing-flow framework maps the geometry and curvature of low-dimensional manifolds that harbor neural population activity, going beyond Gaussian and linearity assumptions to reveal nonlinear statistical dependencies among groups of neurons.

From Individual to Swarm Dynamics of Motile Photokinetic Organisms

J. Morales, P. Muñoz, D. Noto, H. N. Ulloa, and F. Guzmán-Lastra

PRX Life 4, 023010 (2026) - Published 30 April, 2026

An agent-based model that incorporates photokinesis, gyrotaxis, and stochastic reorientation helps elucidate the mechanisms by which complex, population-scale diurnal cycles emerge from the swimming behavior of individual aquatic organisms.

Learning Principle for the Adaptive Shaping of Epigenetic Memory Repertoires

Omer Karin

PRX Life 4, 023011 (2026) - Published 8 May, 2026

Fluctuation-driven feedback allows eukaryotic gene silencing to selectively suppress harmful genetic elements, with aberrant transcription reinforcing silencing locally while modulating it globally.

Incorporating Stochastic Gene Expression, Signaling-Mediated Cell-Cell Interactions, and Regulated Cell Proliferation in Models of Coordinated Tissue Development

Casey O. Barkan and Tom Chou

PRX Life 4, 023012 (2026) - Published 8 May, 2026

This mathematical framework shows how intracellular gene expression transmitted through a chemically communicating and dividing cell population controls tissue development.

Temporal Reformatting of Odor Signals by Flow Environments

Elle Stark, Aaron True, John P. Crimaldi, and Jonathan D. Victor

PRX Life 4, 023013 (2026) - Published 13 May, 2026

Turbulent transport plays an important role in fundamentally transforming odor signals from source to sensor.

Membrane-Anchored Mobile Tethers Modulate Condensate Wetting, Localization, and Migration

Qiwei Yu, Trevor GrandPre, Andrew G. T. Pyo, Andrej Košmrlj, and Ned S. Wingreen

PRX Life 4, 023014 (2026) - Published 15 May, 2026

Mobile membrane tethers dynamically alter wetting properties, driving the localization and organization of biomolecular condensates along complex cellular membrane geometries.

Multi-Timescale Adaptation and Emergent Learning in Single Bacterial Cells

Josiah C. Kratz, Huijing Wang, Fangwei Si, and Shiladitya Banerjee

PRX Life 4, 023015 (2026) - Published 15 May, 2026

E. coli integrate environmental history through scale-free memory, performing recurrent, neural-like computation to balance growth and survival in fluctuating nutrient conditions.

Beyond Arrhenius: Nonlinear and Negative Temperature Scaling of Biological Rates from Multi-Step Mechanisms

Simen Jacobs, Federico Vazquez, Nikita Frolov, and Lendert Gelens

PRX Life 4, 023016 (2026) - Published 19 May, 2026

Multistep reversible biochemical cascades produce a three-regime scaling structure, including apparent negative activation energies, that unifies how biological timing responds to temperature across species and scales.

Theoretical Framework for Calculating Sequence-Dependent Physical Properties of Nucleosomes

Enrico Skoruppa, Manish Yadav, Thor van Heesch, Jocelyne Vreede, and Helmut Schiessel

PRX Life 4, 023017 (2026) - Published 21 May, 2026

A new analytical framework enables genome-wide evaluation of nucleosome positioning based on DNA elasticity.

Revealing Stimulus-Dependent Dynamics Through Statistical Complexity

Edson V. de Paula, Rafael M. Jungmann, Antonio J. Fontenele, Leandro A. A. Aguiar, Pedro V. Carelli, Fernanda S. Matias, Mauro Copelli, and Nivaldo A. P. de Vasconcelos

PRX Life 4, 023018 (2026) - Published 22 May, 2026

While classical measures of spike variability could not distinguish activity across brain areas, a complementary information-theoretic measure revealed structured, stimulus-dependent dynamics in distributed brain circuits.

Attractors are Less Stable than their Basins: Canalization Creates a Coherence Gap in Gene Regulatory Networks

Venkata Sai Narayana Bavisetty, Matthew Wheeler, and Claus Kadelka

PRX Life 4, 023019 (2026) - Published 26 May, 2026

Canalization increases overall stability in gene regulatory networks, but transient states are disproportionately stabilized when compared to attractors that correspond to mature cell types.

Unravelling Three-Dimensional Active Transport by Ciliary Arrays on Coral Surfaces

Siluvai Antony Selvan, Cesar O. Pacherres, Michael Kühl, Angus Butler, Max S. Dhillon, Linda L. Blackall, Peter W. Duck, Draga Pihler-Puzović, and Douglas R. Brumley

PRX Life 4, 023020 (2026) - Published 26 May, 2026

Experimental measurements of cilia distribution and fluid flow at the surface of reef-building coral uncover the crucial role of ciliary orientation in modulating nutrient transport.

Molecular Flexibility and Electrostatic Interactions Drive the Nanoscale Structure of Coiled-Coil GM130 Protein Condensates

Pablo Mateos-Gil, Alejandro Feito, Daniel González Cava, Andrés R. Tejedor, Víctor G. Almendro-Vedia, Jeff Coleman, Hong Zheng, Michaela Simanjuntak, Jean N. D. Goder, James E. Rothman, Jorge R. Espinosa, Frederic Pincet, and Iván López-Montero

PRX Life 4, 023021 (2026) - Published 28 May, 2026

Atomic force microscopy is used to directly visualize conformational transitions in GM130 Golgi tether proteins, which drive condensate formation.

Theory of Multiscale Epithelial Mechanics under Stretch: From Active Gels to Vertex Models

Adam Ouzeri, Sohan Kale, Nimesh Chahare, Alejandro Torres-Sanchez, Daniel Santos-Olivan, Xavier Trepat, and Marino Arroyo

PRX Life 4, 023022 (2026) - Published 29 May, 2026

A framework that unifies active gel models of the actomyosin cortex and vertex models of tissues captures a number of seemingly disconnected time-dependent phenomenologies in epithelial monolayers.

Inheritance Entropy: A Model-Independent Method to Probe the Hereditary Structure of Cell Lineage Trees

Alessandro Allegrezza, Riccardo Beschi, Domenico Caudo, Andrea Cavagna, Alessandro Corsi, Antonio Culla, Samantha Donsante, Giuseppe Giannicola, Irene Giardina, Giorgio Gosti, Tomás S. Grigera, Stefania Melillo, Biagio Palmisano, Leonardo Parisi, Lorena Postiglione, Mara Riminucci, and Francesco Saverio Rotondi

PRX Life 4, 023023 (2026) - Published 2 June, 2026

The concept of inheritance entropy is introduced and experimentally demonstrated to quantitatively predict the hereditary variations in the proliferative power of stem cell lineages.

Paused in Translation: A Model for the Transcript Length-Dependent Impact of Ribosome-Targeting Antibiotics on Degrading mRNAs

Johannes Keisers, Norbert Kern, and Luca Ciandrini

PRX Life 4, 023024 (2026) - Published 3 June, 2026

A stochastic transport model reveals that antibiotic-induced ribosome pausing triggers collective jamming on mRNA, making longer transcripts disproportionately vulnerable.

Beyond Diffusion: Bayesian Learning Strategies in Single-Cell Life

Maor Knafo, Elena Casacuberta, and Iñaki Ruiz-Trillo

PRX Life 4, 023025 (2026) - Published 5 June, 2026

Experiments in a unicellular relative of animals validate the predictions of a model which treats organisms as Markovian Bayesian agents that learn from environmental states, providing insights into the link between within-lifetime learning and generational adaptation.

Decision-Making in Light-Trapped Slime Molds Involves Active Mechanical Processes

Lisa Schick, Emily Eichenlaub, Fabian Drexel, Alexander Mayer, Siyu Chen, Marcus Roper, and Karen Alim

PRX Life 4, 023026 (2026) - Published 8 June, 2026

A slime mold confined by harmful blue light extensively explores the boundaries of the confinement before settling on the optimal escape strategy.

Lattice Ultrasensitivity Amplifies Signals in E. coli without Finely-Tuned Allosteric Interactions

Derek M. Sherry, Isabella R. Graf, Samuel J. Bryant, Thierry Emonet, and Benjamin B. Machta

PRX Life 4, 023027 (2026) - Published 8 June, 2026

This work presents an E. coli chemosensory lattice that implements gain through non-equilibrium reactions between neighboring core signaling units rather than allosteric interactions, achieving high gain through time-scale separation.

Fitness and Overfitness: Implicit Regularization in Evolutionary Dynamics

Hagai Rappeport and Mor Nitzan

PRX Life 4, 023028 (2026) - Published 17 June, 2026

Mapping evolutionary dynamics to Bayesian learning shows that organismal complexity tends to match environmental complexity, but rapid environmental changes may favor simpler forms.

Learning by Training: Emergent Physical Memory from Cyclically Tuning Disordered Sphere Packings

Mengjie Zu and Carl P. Goodrich

PRX Life 4, 023029 (2026) - Published 18 June, 2026

Using disordered solids as a model, this work demonstrates how cyclic environmental change can produce robust system memory.

Autonomous Learning from Intrinsic Sensory Dependencies Yields Generalizable Representations in Cortical-Like Networks

Udaya B. Rongala and Henrik Jörntell

PRX Life 4, 023030 (2026) - Published 22 June, 2026

A simulated cortical network rapidly establishes functional circuitry through autonomous learning from mechanically coupled sensors.

Inhibitory Dynamics in a Two-Population Kuramoto Model Captures Scale-Free Avalanches and Synchronization in Neuronal Cultures

D. Lucente, L. Cerutti, M. Brofiga, A. Sarracino, G. Parodi, S. Martinoia, P. Massobrio, and L. de Arcangelis

PRX Life 4, 023031 (2026) - Published 23 June, 2026

Inhibition dynamics implemented in the Kuramoto model is able to reproduce the coexistence of scale free avalanches and encompassing bursts observed experimentally.

Critical Capillary Waves of Biomolecular Condensates

Shunsuke F. Shimobayashi, Paul J. Ackerman, Tomo Kurimura, Takashi Taniguchi, and Clifford P. Brangwynne

PRX Life 4, 023032 (2026) - Published 25 June, 2026

Nuclear condensates exhibit critical-like capillary behavior and unexpected bending elasticity, enabling their interfacial mechanics to be measured noninvasively in living cells.

Quantitative Characterization of Budding Yeast Polarization at the Mesoscale

Marieke M. Glazenburg, Esther Geurken, and Liedewij Laan

PRX Life 4, 023033 (2026) - Published 29 June, 2026

A quantitative description of budding yeast polarization derived from live cell imaging enables systematic comparison of polarization phenotypes, revealing varying degrees of variation in physical characteristics.

REVIEW ARTICLES

When a Bath Is Not Enough: State-Dependent Energy Injection and Nonmonotonic Dissipation in Cytoskeletal Matter

Michael Murrell

PRX Life 4, 027001 (2026) - Published 8 April, 2026

This review article explores the discoveries about energy injection in cytoskeletal matter and proposes a unifying perspective that highlights how energy injection is itself a state-dependent, regulated process rather than a fixed external bath.

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