Quantum sensors offer significant advantages over classical devices in spatial resolution and sensitivity, enabling transformative applications across materials science, healthcare, and beyond. Their practical performance, however, is often constrained by unmodelled effects, including noise, imperfect state preparation, and non-ideal control fields. In this work, we report the first experimental implementation of a graybox modelling strategy for a solid-state open quantum system. The graybox framework integrates a physics-based system model with a data-driven description of experimental imperfections, achieving higher fidelity than purely analytical (whitebox) approaches while requiring fewer training resources than fully deep-learning blackbox models. We experimentally validate the method on the task of estimating a static magnetic field using a single-spin quantum sensor, performing Bayesian inference with a graybox model trained on prior experimental data. Using roughly 10,000 training datapoints, the graybox model yields several orders of magnitude improvement in mean squared error over the corresponding physics-only model, as well as significant improvement over a blackbox model with comparable size. These results are broadly applicable to a wide range of quantum sensing platforms, not limited to single-spin systems, and are particularly valuable for real-time adaptive protocols, where model inaccuracies can otherwise lead to sub-optimal control and degraded performance.