- Open Access
Upscaling from Ab Initio Atomistic Simulations to Electrode Scale: The Case of Manganese Hexacyanoferrate, a Cathode Material for Na-Ion Batteries
PRX Energy 5, 033001 – Published 1 July, 2026
DOI: https://doi.org/10.1103/ydcg-9cy4
Abstract
We present a generalizable scale-bridging computational framework that enables predictive modeling of insertion-type electrode materials from atomistic to device scales. Applied to sodium manganese hexacyanoferrate, a promising cathode material for grid-scale sodium-ion batteries, our methodology employs an active-learning strategy to train a moment tensor potential through iterative hybrid grand-canonical Monte Carlo-molecular dynamics sampling, robustly capturing configuration spaces at all sodiation levels. The resulting machine learning interatomic potential accurately reproduces experimental properties, including volume expansion, operating voltage, and sodium concentration-dependent structural transformations, while revealing a four-order-of-magnitude difference in sodium diffusivity between the rhombohedral (sodium-rich) and tetragonal (sodium-poor) phases at 300 K. We directly compute all critical parameters—temperature- and concentration-dependent diffusivities, interfacial and strain energies, and complete free-energy landscapes—to feed them into pseudo-2D phase-field simulations that predict phase-boundary propagation and rate-dependent performances across electrode length scales. This multiscale workflow establishes a blueprint for rational computational design of next-generation insertion-type materials, such as battery electrode materials, demonstrating how atomistic insights can be systematically translated into continuum-scale predictions.
Physics Subject Headings (PhySH)
Popular Summary
Developing high-performance batteries often requires years of experimental trial and error. To address this bottleneck, scientists have introduced a simulation blueprint that creates multiscale models capable of predicting physical properties from the atomic scale to the device scale. This study focuses on manganese hexacyanoferrate, a low-cost and sustainable material for sodium-ion batteries. The authors trained a highly accurate machine-learning model capable of simulating atomic properties with quantum mechanical accuracy. The model successfully predicts the coexistence of sodium-poor and sodium-rich phases during operation and reveals that sodium ions move ten thousand times faster in the former (sodium-poor) phase than in the latter, a crucial kinetic property. By feeding these atomic-scale discoveries into a device-scale model, researchers can now predict battery charging speeds and overall performance. This framework provides a blueprint for the rapid, simulation-led design of next-generation material systems involving the insertion and removal of atoms, such as battery and gas storage materials.
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References (43)
- Z. Li, Y. Wang, Fçois Rabuel, M. Deschamps, G. B.;lle Rousse, O. Sel, and J.-M. Tarascon, Prussian blue analog cathodes for Na-ion batteries—From fundamentals to practical demonstration, Energy Storage Mater. 76, 104118 (2025).
- J. Song, L. Wang, Y. Lu, J. Liu, B. Guo, P. Xiao, J.-J. Lee, X.-Q. Yang, G. Henkelman, and J. B. Goodenough, Removal of interstitial in hexacyanometallates for a superior cathode of a sodium-ion battery, J. Am. Chem. Soc. 137, 2658 (2015).
- Y. P. Wang, B. P. Hou, X. R. Cao, S. Q. Wu, and Z. Z. Zhu, Structural evolution, redox mechanism, and ionic diffusion in rhombohedral for sodium-ion batteries: First-principles calculations, J. Electrochem. Soc. 169, 010515 (2022).
- X. Guo, Z. Wang, Z. Deng, X. Li, B. Wang, X. Chen, and S. P. Ong, Water contributes to higher energy density and cycling stability of Prussian blue analogue cathodes for aqueous sodium-ion batteries, Chem. Mater. 31, 5933 (2019).
- P. Xiao, J. Song, L. Wang, J. B. Goodenough, and G. Henkelman, Theoretical study of the structural evolution of a cathode upon Na intercalation, Chem. Mater. 27, 3763 (2015).
- S. Baumgart, M. Sotoudeh, and A. Groß, Rhombohedral () Prussian white as cathode material: An ab-initio study, Batteries Supercaps 6, e202300294 (2023).
- D. A. Cogswell and M. Z. Bazant, Coherency strain and the kinetics of phase separation in nanoparticles, ACS Nano 6, 2215 (2012).
- R. B. Smith and M. Z. Bazant, Multiphase porous electrode theory, J. Electrochem. Soc. 164, E3291 (2017).
- D. Kwon and D. Kim, Machine learning interatomic potentials in engineering perspective for developing cathode materials, J. Mater. Chem. A 12, 23837 (2024).
- X. Guo, C. Chen, and S. P. Ong, Intercalation chemistry of the disordered rocksalt anode from cluster expansions and machine learning interatomic potentials, Chem. Mater. 35, 1537 (2023).
- M. Mock, M. Bianchini, F. Fauth, K. Albe, and S. Sicolo, Atomistic understanding of the phase diagram from experimentally guided lattice models, J. Mater. Chem. A 9, 14928 (2021).
- M. F. Shojaei, J. Holber, S. Das, G. H. Teichert, T. Mueller, L. Hung, V. Gavini, and K. Garikipati, Bridging scales with machine learning: From first principles statistical mechanics to continuum phase field computations to study order–disorder transitions in , J. Mech. Phys. Solids 190, 105726 (2024).
- Y. Lysogorskiy, A. Bochkarev, M. Mrovec, and R. Drautz, Active learning strategies for atomic cluster expansion models, Phys. Rev. Mater. 7, 043801 (2023).
- E. Podryabinkin, K. Garifullin, A. Shapeev, and I. Novikov, MLIP-3: Active learning on atomic environments with moment tensor potentials, J. Chem. Phys. 159, 114104 (2023).
- Y. Zuo, C. Chen, X. Li, Z. Deng, Y. Chen, J. Behler et al., Performance and cost assessment of machine learning interatomic potentials, J. Phys. Chem. A 124, 731 (2020).
- E. V. Podryabinkin and A. V. Shapeev, Active learning of linearly parametrized interatomic potentials, Comput. Mater. Sci. 140, 171 (2017).
- R. Jinnouchi, F. Karsai, and G. Kresse, On-the-fly machine learning force field generation: Application to melting points, Phys. Rev. B 100, 014115 (2019).
- R. Jinnouchi, J. Lahnsteiner, F. Karsai, G. Kresse, and M. Bokdam, Phase transitions of hybrid perovskites simulated by machine-learning force fields trained on the fly with Bayesian inference, Phys. Rev. Lett. 122, 225701 (2019).
- fix gcmc command—LAMMPS documentation, https://docs.lammps.org/fix_gcmc.html [accessed 2025].
- G. Kresse and J. Furthmüller, Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set, Comput. Mater. Sci. 6, 15 (1996).
- G. Kresse and J. Furthmüller, Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set, Phys. Rev. B 54, 11169 (1996).
- D. Ito, S.-H. Jang, H. Ando, T. Momma, and Y. Tateyama, Dissimilar diffusion mechanisms of , , and ions in anhydrous Fe-based Prussian blue cathode, J. Am. Chem. Soc. 147, 25441 (2025).
- D. Ito, S.-H. Jang, H. Ando, T. Momma, and Y. Tateyama, Interplay of hydration and framework dynamics for diffusion in defect-free Mn-based Prussian blue analogues: First-principles calculations, Chem. Mater. 38, 1144 (2026).
- F. S. Hegner, J. R. Galán-Mascarós, and N. López, A database of the structural and electronic properties of Prussian blue, Prussian white, and Berlin green compounds through density functional theory, Inorg. Chem. 55, 12851 (2016).
- S. Baumgart, M. Sotoudeh, I. E. Castelli, and A. Groß, Improved calculation framework for Prussian blue analogues as a battery material, EES Batteries 2, 220 (2026).
- M. Li and F. Corà, Structural evolution of Prussian blue analogues upon intercalation of , and , J. Mater. Chem. A 13, 7207 (2025).
- J. C. Wojdeł, I. de P. R. Moreira, F. Illas, and S. Brommer, On the prediction of the crystal and electronic structure of mixed-valence compounds by means of methods: The case of Prussian blue, J. Chem. Phys. 128, 044713 (2008).
- M. B. Robin, The color and electronic configurations of Prussian blue, Inorg. Chem. 1, 337 (1962).
- A. P. Thompson, H. M. Aktulga, R. Berger, D. S. Boline, W. M. Brown et al., LAMMPS—A flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales, Comput. Phys. Commun. 271, 108171 (2022).
- I. S. Novikov, K. Gubaev, E. V. Podryabinkin, and A. V. Shapeev, The MLIP package: Moment tensor potentials with MPI and active learning, Mach. Learn. Sci. Technol. 2, 025002 (2021).
- S. A. Goreinov, E. E. Tyrtyshnikov, and N. L. Zamarashkin, How to find a good submatrix, in Matrix Methods: Theory, Algorithms and Applications (World Scientific, Singapore, 2010), pp. 247–256.
- A. Abdellahi, O. Akyildiz, R. Malik, K. Thornton, and G. Ceder, Particle-size and morphology dependence of the preferred interface orientation in nano-particles, J. Mater. Chem. A 2, 15437 (2014).
- A. R. Natarajan, J. C. Thomas, B. Puchala, and A. Van der Ven, Symmetry-adapted order parameters and free energies for solids undergoing order-disorder phase transitions, Phys. Rev. B 96, 134204 (2017).
- A. Van der Ven, Z. Deng, S. Banerjee, and S. P. Ong, Rechargeable alkali-ion battery materials: Theory and computation, Chem. Rev. 120, 6977 (2020).
- Z. Chen, D. L. Danilov, R.-A. Eichel, and P. H. Notten, Porous electrode modeling and its applications to Li-ion batteries, Adv. Energy. Mater. 12, 2201506 (2022).
- J. Meng, G. Luo, M. Ricco, M. Swierczynski, D.-I. Stroe, and R. Teodorescu, Overview of lithium-ion battery modeling methods for state-of-charge estimation in electrical vehicles, Appl. Sci. 8, 659 (2018).
- M. Doyle, T. F. Fuller, and J. Newman, Modeling of galvanostatic charge and discharge of the lithium/polymer/insertion cell, J. Electrochem. Soc. 140, 1526 (1993).
- J. Newman and N. P. Balsara, Electrochemical Systems, 4th ed. (John Wiley & Sons, New York, 2021).
- A. Vasileiadis, N. J. J. de Klerk, R. B. Smith, S. Ganapathy, P. P. R. M. L. Harks, M. Z. Bazant, and M. Wagemaker, Toward optimal performance and in-depth understanding of spinel electrodes through phase field modeling, Adv. Funct. Mater. 28, 1705992 (2018).
- Tž Katrašnik, Jže Moškon, K. Zelič, I. Mele, F. Ruiz-Zepeda, and M. Gaberšček, Entering voltage hysteresis in phase-separating materials: Revealing the electrochemical signature of the intraparticle phase-separated state, Adv. Mater. 35, 2210937 (2023).
- J. M. Foster, Y. Grudeva, I. Korotkin, E. J. F. Dickinson, G. Offer, and G. Richardson, The Newman model for phase-change electrodes: Physics-based hysteresis, J. Electrochem. Soc. 172, 040501 (2025).
- Y. Liu, X. He, and Y. Mo, Discrepancies and error evaluation metrics for machine learning interatomic potentials, npj Comput. Mater. 9, 174 (2023).
- F. N. Jalolov, E. V. Podryabinkin, A. R. Oganov, A. V. Shapeev, and A. G. Kvashnin, Mechanical properties of single and polycrystalline solids from machine learning, Adv. Theory Simul. 7, 2301171 (2024).
