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Fluid transport and mixing by an unsteady microswimmer
Phys. Rev. Fluids 2, 013103 – Published 25 January, 2017
DOI: https://doi.org/10.1103/PhysRevFluids.2.013103
Abstract
We study the fluid drift due to a time-dependent dumbbell model of a microswimmer. The model captures important aspects of real microswimmers such as a time-dependent flagellar motion and a no-slip body. The model consists of a rigid sphere for the body and a time-dependent moving Stokeslet representing the flagella. We analyze the paths of idealized fluid particles displaced by the swimmer. The simplicity of the model allows some asymptotic calculations very near and far away from the swimmer. The displacements of particles near the swimmer diverge in a manner similar to an isolated no-slip sphere, but with a smaller coefficient due to the action of the flagellum. Far from the swimmer, the time dependence becomes negligible due to both being very fast and decaying with distance. Finally, we compute the probability distribution of particle displacements and find that our model has fatter tails than previous steady models, due to the presence of a no-slip surface that drags particles along.
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References (77)
- M. J. Kim and K. S. Breuer, Enhanced diffusion due to motile bacteria, Phys. Fluids 16, L78 (2004).
- E. Kunze, J. F. Dower, I. Beveridge, R. Dewey, and K. P. Bartlett, Observations of biologically generated turbulence in a coastal inlet, Science 313, 1768 (2006).
- D. T. N. Chen, A. W. C. Lau, L. A. Hough, M. F. Islam, M. Goulian, T. C. Lubensky, and A. G. Yodh, Fluctuations and Rheology in Active Bacterial Suspensions, Phys. Rev. Lett. 99, 148302 (2007).
- K. Katija and J. O. Dabiri, A viscosity-enhanced mechanism for biogenic ocean mixing, Nature (London) 460, 624 (2009).
- K. C. Leptos, J. S. Guasto, J. P. Gollub, A. I. Pesci, and R. E. Goldstein, Dynamics of Enhanced Tracer Diffusion in Suspensions of Swimming Eukaryotic Microorganisms, Phys. Rev. Lett. 103, 198103 (2009).
- A. Lorke and W. N. Probst, In situ measurements of turbulence in fish shoals, Limnol. Oceanogr. 55, 354 (2010).
- H. Kurtuldu, J. S. Guasto, K. A. Johnson, and J. P. Gollub, Enhancement of biomixing by swimming algal cells in two-dimensional films, Proc. Natl. Acad. Sci. USA 108, 10391 (2011).
- K. Katija, Biogenic inputs to ocean mixing, J. Exp. Biol. 215, 1040 (2012).
- A. Jepson, V. A. Martinez, J. Schwarz-Linek, A. Morozov, and W. C. K. Poon, Enhanced diffusion of nonswimmers in a three-dimensional bath of motile bacteria, Phys. Rev. E 88, 041002 (2013).
- C. Noss and A. Lorke, Direct observation of biomixing by vertically migrating zooplankton, Limnol. Oceanogr. 59, 724 (2014).
- P. T. Underhill, J. P. Hernandez-Ortiz, and M. D. Graham, Diffusion and Spatial Correlations in Suspensions of Swimming Particles, Phys. Rev. Lett. 100, 248101 (2008).
- I. Rushkin, V. Kantsler, and R. E. Goldstein, Fluid Velocity Fluctuations in a Suspension of Swimming Protists, Phys. Rev. Lett. 105, 188101 (2010).
- T. Ishikawa, J. T. Locsei, and T. J. Pedley, Fluid particle diffusion in a semidilute suspension of model micro-organisms, Phys. Rev. E 82, 021408 (2010).
- A. M. Leshansky and L. M. Pismen, Do small swimmers mix the ocean?, Phys. Rev. E 82, 025301 (2010).
- E. Kunze, Fluid mixing by swimming organisms in the low-Reynolds-number limit, J. Mar. Res. 69, 591 (2011).
- Z. Lin, J.-L. Thiffeault, and S. Childress, Stirring by squirmers, J. Fluid Mech. 669, 167 (2011).
- I. M. Zaid, J. Dunkel, and J. M. Yeomans, Lévy fluctuations and mixing in dilute suspensions of algae and bacteria, J. R. Soc. Interface 8, 1314 (2011).
- J. O. Dabiri, Role of vertical migration in biogenic ocean mixing, Geophys. Res. Lett. 37, L11602 (2010).
- W. K. Dewar, R. J. Bingham, R. L. Iverson, D. P. Nowacek, L. C. St. Laurent, and P. H. Wiebe, Does the marine biosphere mix the ocean?, J. Mar. Res. 64, 541 (2006).
- M. C. Gregg and J. K. Horne, Turbulence, acoustic backscatter, and pelagic nekton in Monterey bay, J. Phys. Ocean. 39, 1097 (2009).
- M. E. Huntley and M. Zhou, Influence of animals on turbulence in the sea, Mar. Ecol. Prog. Ser. 273, 65 (2004).
- S. Rousseau, E. Kunze, R. Dewey, K. Bartlett, and J. Dower, On turbulence production by swimming marine organisms in the open ocean and coastal waters, J. Phys. Ocean. 40, 2107 (2010).
- G. Subramanian, Viscosity-enhanced bio-mixing of the oceans, Curr. Sci. 98, 1103 (2010).
- J.-L. Thiffeault and S. Childress, Stirring by swimming bodies, Phys. Lett. A 374, 3487 (2010).
- A. W. Visser, Biomixing of the oceans?, Science 316, 838 (2007).
- M. R. Rasmussen, J. Laursena, S. R. Craig, and E. McLean, Do fish enhance tank mixing?, Aquaculture 250, 162 (2005).
- E. M. Purcell, Life at low Reynolds number, Am. J. Phys. 45, 3 (1977).
- N. H. Mendelson, A. Bourque, K. Wilkening, K. R. Anderson, and J. C. Watkins, Organized cell swimming motions in Bacillus subtilis colonies: Patterns of short-lived whirls and jets, J. Bacteriol. 181, 600 (1999).
- C. Dombrowski, L. Cisneros, S. Chatkaew, R. E. Goldstein, and J. O. Kessler, Self-Concentration and Large-Scale Coherence in Bacterial Dynamics, Phys. Rev. Lett. 93, 098103 (2004).
- J. P. Hernandez-Ortiz, C. G. Stoltz, and M. D. Graham, Transport and Collective Dynamics in Suspensions of Confined Swimming Particles, Phys. Rev. Lett. 95, 204501 (2005).
- D. Saintillan and M. J. Shelley, Orientational Order and Instabilities in Suspensions of Self-Locomoting Rods, Phys. Rev. Lett. 99, 058102 (2007).
- A. Sokolov, I. S. Aranson, J. O. Kessler, and R. E. Goldstein, Concentration Dependence of the Collective Dynamics of Swimming Bacteria, Phys. Rev. Lett. 98, 158102 (2007).
- A. Sokolov, R. E. Goldstein, F. I. Feldchtein, and I. S. Aranson, Enhanced mixing and spatial instability in concentrated bacterial suspensions, Phys. Rev. E 80, 031903 (2009).
- L. H. Cisneros, J. O. Kessler, S. Ganguly, and R. E. Goldstein, Dynamics of swimming bacteria: Transition to directional order at high concentration, Phys. Rev. E 83, 061907 (2011).
- P. T. Underhill and M. D. Graham, Correlations and fluctuations of stress and velocity in suspensions of swimming microorganisms, Phys. Fluids 23, 121902 (2011).
- D. Saintillan and M. J. Shelley, Emergence of coherent structures and large-scale flows in motile suspensions, J. R. Soc. Interface 9, 571 (2012).
- A. J. Rothschild, Non-random distribution of bull spermatozoa in a drop of sperm suspension, Nature (London) 198, 1221 (1963).
- H. Winet, G. S. Bernstein, and J. Head, Observations on the response of human spermatozoa to gravity, boundaries and fluid shear, J. Reprod. Fert. 70, 511 (1984).
- J. Cosson, P. Huitorel, and C. Gagnon, How spermatozoa come to be confined to surfaces, Cell Motil. Cytoskel. 54, 56 (2003).
- E. Lauga, W. R. DiLuzio, G. M. Whitesides, and H. A. Stone, Swimming in circles: motion of bacteria near solid boundaries, Biophys. J. 90, 400 (2006).
- A. P. Berke, L. Turner, H. C. Berg, and E. Lauga, Hydrodynamic Attraction of Swimming Microorganisms by Surfaces, Phys. Rev. Lett. 101, 038102 (2008).
- K. Drescher, K. C. Leptos, I. Tuval, T. Ishikawa, T. J. Pedley, and R. E. Goldstein, Dancing Volvox: Hydrodynamic Bound States of Swimming Algae, Phys. Rev. Lett. 102, 168101 (2009).
- X.-L. Wu and A. Libchaber, Particle Diffusion in a Quasi-Two-Dimensional Bacterial Bath, Phys. Rev. Lett. 84, 3017 (2000).
- G. L. Miño, T. E. Mallouk, T. Darnige, M. Hoyos, J. Dauchet, J. Dunstan, R. Soto, Y. Wang, A. Rousselet, and E. Clément, Enhanced Diffusion due to Active Swimmers at a Solid Surface, Phys. Rev. Lett. 106, 048102 (2011).
- G. L. Miño, J. Dunstan, A. Rousselet, E. Clément, and R. Soto, Induced diffusion of tracers in a bacterial suspension: Theory and experiments, J. Fluid Mech. 729, 423 (2013).
- D. O. Pushkin, H. Shum, and J. M. Yeomans, Fluid transport by individual microswimmers, J. Fluid Mech. 726, 5 (2013).
- J. C. Maxwell, On the displacement in a case of fluid motion, Proc. London Math. Soc. s1-3, 82 (1869).
- J. Dunkel, V. B. Putz, I. M. Zaid, and J. M. Yeomans, Swimmer-tracer scattering at low Reynolds number, Soft Matter 6, 4268 (2010).
- C. G. Darwin, Note on hydrodynamics, Proc. Camb. Philos. Soc. 49, 342 (1953).
- M. J. Lighthill, Drift, J. Fluid Mech. 1, 31 (1956); 2, 31 (1956).
- I. Eames, D. Gobby, and S. B. Dalziel, Fluid displacement by Stokes flow past a spherical droplet, J. Fluid Mech. 485, 67 (2003).
- S. Melkoumian and B. Protas, Wake effects on drift in two-dimensional inviscid incompressible flows, Phys. Fluids 26, 123601 (2014).
- Z. Lin and Y. Zhang, Stirring by multiple cylinders in potential flow, J. Fluid Mech. 794, 552 (2016).
- S. Melkoumian and B. Protas, Drift due to two obstacles in different arrangements, Theoret. Comp. Fluid. Dyn. 30, 529 (2016).
- S. Michelin and E. Lauga, Unsteady feeding and optimal strokes of model ciliates, J. Fluid Mech. 715, 1 (2013).
- A. Morozov and D. Marenduzzo, Enhanced diffusion of tracer particles in dilute bacterial suspensions, Soft Matter 10, 2748 (2014).
- T. V. Kasyap, D. L. Koch, and M. Wu, Hydrodynamic tracer diffusion in suspensions of swimming bacteria, Phys. Fluids 26, 081901 (2014).
- D. O. Pushkin and J. M. Yeomans, Fluid Mixing by Curved Trajectories of Microswimmers, Phys. Rev. Lett. 111, 188101 (2013).
- D. O. Pushkin and J. M. Yeomans, Stirring by swimmers in confined microenvironments, J. Stat. Mech. (2014) P04030.
- K. D. Drescher, R. E. Goldstein, N. Michel, M. Polin, and I. Tuval, Direct Measurement of the Flow Field Around Swimming Microorganisms, Phys. Rev. Lett. 105, 168101 (2010).
- J. S. Guasto, K. A. Johnson, and J. P. Gollub, Oscillatory Flows Induced by Microorganisms Swimming in Two-Dimensions, Phys. Rev. Lett. 105, 168102 (2010).
- B. M. Friedrich and F. Jülicher, Flagellar Synchronization Independent of Hydrodynamic Interactions, Phys. Rev. Lett. 109, 138102 (2012).
- E. Guazzelli and J. F. Morris, A Physical Introduction to Suspension Dynamics (Cambridge University Press, Cambridge, 2011).
- C. W. Oseen, Hydrodynamik, Mathematik und Ihre Anwendungen in Monographien und Lehrbüchern (Akademische Verlagsgesellschaft, Leipzig, 1927).
- C. Maul and S. Kim, Image of a point force in a spherical container and its connection to the lorentz reflection formula, J. Eng. Math. 30, 119 (1996).
- Y. O. Fuentes, S. Kim, and D. J. Jeffrey, Mobility functions for two unequal viscous drops in stokes flow. I. Axisymmetric motions, Phys. Fluids 31, 2445 (1988).
- J. P. Hernandez-Ortiz, J. J. de Pablo, and M. D. Graham, Fast Computation of Many-Particle Hydrodynamic and Electrostatic Interactions in a Confined Geometry, Phys. Rev. Lett. 98, 140602 (2007).
- H. Aref, Stirring by chaotic advection, J. Fluid Mech. 143, 1 (1984).
- V. Rom-Kedar, A. Leonard, and S. Wiggins, An analytical study of transport, mixing and chaos in an unsteady vortical flow, J. Fluid Mech. 214, 347 (1990).
- J. M. Ottino, Mixing, chaotic advection, and turbulence, Annu. Rev. Fluid Mech. 22, 207 (1990).
- Stephen Wiggins, Chaotic Transport in Dynamical Systems (Springer, New York, 1992).
- T. Tél, J. Vollmer, and W. Breymann, Transient chaos: The origin of transport in driven systems, Europhys. Lett. 35, 659 (1996).
- A. Péntek, G. Károlyi, I. Scheuring, T. Tél, Z. Toroczkai, J. Kadtke, and C. Grebogi, Fractality, chaos and reactions in imperfectly mixed open hydrodynamical flows, Physica A 274, 120 (1999).
- J.-L. Thiffeault, Distribution of particle displacements due to swimming microorganisms, Phys. Rev. E 92, 023023 (2015).
- M. J. Lighthill, On the squirming motion of nearly spherical deformable bodies through liquids at very small Reynolds numbers, Commun. Pure Appl. Math. 5, 109 (1952).
- J. R. Blake, A spherical envelope approach to ciliary propulsion, J. Fluid Mech. 46, 199 (1971).
- R. Jeanneret, D. O. Pushkin, V. Kantsler, and M. Polin, Entrainment dominates the interaction of microalgae with micron-sized objects, Nat. Commun. 7, 12518 (2016).